Wall clock time and date at job start Tue Mar 31 2020 04:52:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46892 * 111.00306 * 2 1 4 4 C 1.50701 * 109.46993 * 66.04420 * 3 2 1 5 5 H 1.07994 * 120.00328 * 0.02562 * 4 3 2 6 6 C 1.37887 * 119.99865 * 179.97438 * 4 3 2 7 7 N 1.31513 * 120.00027 * 0.02562 * 6 4 3 8 8 Si 1.86798 * 119.99584 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47468 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.47108 * 120.00613 * 8 6 4 11 11 H 1.48507 * 109.47091 * 240.00414 * 8 6 4 12 12 C 1.46906 * 110.99925 * 236.04735 * 2 1 3 13 13 C 1.52998 * 109.47197 * 199.76710 * 12 2 1 14 14 H 1.09003 * 109.47068 * 302.16128 * 13 12 2 15 15 O 1.42905 * 109.47031 * 62.15935 * 13 12 2 16 16 C 1.52999 * 109.47318 * 182.15693 * 13 12 2 17 17 N 1.46901 * 109.47409 * 179.97438 * 16 13 12 18 18 C 1.46893 * 111.00024 * 180.02562 * 17 16 13 19 19 C 1.50702 * 109.47178 * 180.02562 * 18 17 16 20 20 C 1.38145 * 119.60385 * 94.99830 * 19 18 17 21 21 C 1.38701 * 119.22006 * 179.97438 * 20 19 18 22 22 C 1.38543 * 118.45423 * 359.97438 * 21 20 19 23 23 C 1.38515 * 119.14150 * 0.02562 * 22 21 20 24 24 F 1.35104 * 119.65130 * 179.97438 * 23 22 21 25 25 N 1.31908 * 119.59764 * 274.72826 * 19 18 17 26 26 H 1.08999 * 109.47031 * 54.96694 * 1 2 3 27 27 H 1.09002 * 109.47006 * 174.96219 * 1 2 3 28 28 H 1.08993 * 109.46940 * 294.96483 * 1 2 3 29 29 H 1.08994 * 109.47530 * 186.04788 * 3 2 1 30 30 H 1.09008 * 109.47253 * 306.04661 * 3 2 1 31 31 H 0.97000 * 119.99606 * 179.97438 * 7 6 4 32 32 H 1.09000 * 109.46958 * 319.76806 * 12 2 1 33 33 H 1.09002 * 109.47247 * 79.76447 * 12 2 1 34 34 H 0.96701 * 114.00201 * 59.99801 * 15 13 12 35 35 H 1.08995 * 109.47044 * 300.00138 * 16 13 12 36 36 H 1.09002 * 109.46836 * 59.99632 * 16 13 12 37 37 H 1.00901 * 110.99676 * 56.04861 * 17 16 13 38 38 H 1.09006 * 109.47427 * 300.00241 * 18 17 16 39 39 H 1.08997 * 109.47301 * 59.99976 * 18 17 16 40 40 H 1.07997 * 120.38683 * 359.96169 * 20 19 18 41 41 H 1.08001 * 120.77358 * 180.02562 * 21 20 19 42 42 H 1.08009 * 120.43027 * 179.97438 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3713 0.0000 4 6 1.6370 2.0470 1.2984 5 1 1.0746 1.5112 2.0488 6 6 2.0278 3.3491 1.5289 7 7 2.7130 4.0015 0.6154 8 14 1.5840 4.1863 3.1387 9 1 0.8166 3.2438 3.9918 10 1 2.8259 4.5929 3.8441 11 1 0.7569 5.3880 2.8601 12 6 1.9955 -0.7660 -1.1377 13 6 3.4455 -1.1649 -0.8566 14 1 4.0400 -0.2695 -0.6748 15 8 3.4925 -2.0098 0.2950 16 6 4.0109 -1.9161 -2.0636 17 7 5.4034 -2.2986 -1.7941 18 6 5.9805 -3.0231 -2.9342 19 6 7.4060 -3.3987 -2.6212 20 6 7.6847 -4.6496 -2.1055 21 6 8.9996 -4.9870 -1.8209 22 6 9.9897 -4.0498 -2.0672 23 6 9.6359 -2.8150 -2.5855 24 9 10.5930 -1.8932 -2.8291 25 7 8.3732 -2.5309 -2.8481 26 1 -0.3633 0.5899 -0.8415 27 1 -0.3633 -1.0237 -0.0902 28 1 -0.3633 0.4337 0.9316 29 1 3.0797 1.3443 -0.1083 30 1 1.5612 1.9273 -0.8310 31 1 2.9876 4.9176 0.7775 32 1 1.3932 -1.6630 -1.2815 33 1 1.9552 -0.1531 -2.0382 34 1 2.9842 -2.8273 0.2040 35 1 3.4165 -2.8115 -2.2453 36 1 3.9750 -1.2717 -2.9420 37 1 5.4714 -2.8432 -0.9473 38 1 5.4001 -3.9264 -3.1222 39 1 5.9579 -2.3862 -3.8184 40 1 6.8881 -5.3563 -1.9259 41 1 9.2459 -5.9581 -1.4175 42 1 11.0242 -4.2788 -1.8570 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000819182934.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:04 Heat of formation + Delta-G solvation = -75.951958 kcal Electronic energy + Delta-G solvation = -23195.426943 eV Core-core repulsion = 19510.042374 eV Total energy + Delta-G solvation = -3685.384569 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.04885 -41.16693 -39.55307 -37.51777 -36.18521 -34.60848 -33.69321 -32.57685 -30.84972 -29.33700 -27.88321 -26.18681 -24.89989 -24.46673 -23.04808 -22.78390 -21.69655 -18.85609 -18.63621 -18.30258 -17.40545 -17.16005 -17.11620 -17.06414 -16.57393 -16.29841 -15.91451 -15.61270 -15.36162 -14.97800 -14.83322 -14.70200 -14.15122 -14.07957 -13.96630 -13.67370 -13.35909 -13.14150 -12.95507 -12.85890 -12.74332 -12.56234 -12.50493 -12.30389 -12.14664 -11.52811 -11.31597 -11.02473 -10.82368 -10.61986 -10.59877 -9.98019 -9.33765 -8.94511 -8.20629 -6.30444 -0.12930 0.16147 1.38889 1.40791 1.54159 2.39785 2.43124 2.57753 3.04777 3.12311 3.41237 3.52953 3.71640 3.76267 3.96992 4.03200 4.08468 4.16475 4.33650 4.39555 4.39968 4.51560 4.59980 4.63987 4.70915 4.78553 4.79772 4.82534 4.99642 5.08361 5.08755 5.13207 5.26355 5.31579 5.63288 5.64927 5.97341 6.07164 6.35274 6.42450 6.66124 6.72115 6.86233 7.10068 7.39156 8.90877 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.017113 B = 0.002785 C = 0.002531 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1635.837581 B =10050.572729 C =11060.485868 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.543 5.543 3 C 0.209 3.791 4 C -0.521 4.521 5 H 0.062 0.938 6 C -0.003 4.003 7 N -0.937 5.937 8 Si 0.971 3.029 9 H -0.262 1.262 10 H -0.280 1.280 11 H -0.276 1.276 12 C 0.026 3.974 13 C 0.125 3.875 14 H 0.055 0.945 15 O -0.558 6.558 16 C 0.047 3.953 17 N -0.698 5.698 18 C 0.111 3.889 19 C 0.147 3.853 20 C -0.166 4.166 21 C -0.038 4.038 22 C -0.189 4.189 23 C 0.270 3.730 24 F -0.131 7.131 25 N -0.541 5.541 26 H 0.006 0.994 27 H 0.086 0.914 28 H 0.053 0.947 29 H 0.000 1.000 30 H -0.042 1.042 31 H 0.263 0.737 32 H 0.103 0.897 33 H 0.026 0.974 34 H 0.381 0.619 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.351 0.649 38 H 0.088 0.912 39 H 0.076 0.924 40 H 0.177 0.823 41 H 0.190 0.810 42 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.215 -25.237 -7.758 27.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.559 4.559 5 H 0.080 0.920 6 C -0.201 4.201 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.185 1.185 10 H -0.206 1.206 11 H -0.202 1.202 12 C -0.103 4.103 13 C 0.065 3.935 14 H 0.073 0.927 15 O -0.364 6.364 16 C -0.083 4.083 17 N -0.332 5.332 18 C -0.018 4.018 19 C 0.009 3.991 20 C -0.186 4.186 21 C -0.063 4.063 22 C -0.210 4.210 23 C 0.117 3.883 24 F -0.110 7.110 25 N -0.257 5.257 26 H 0.025 0.975 27 H 0.105 0.895 28 H 0.072 0.928 29 H 0.018 0.982 30 H -0.024 1.024 31 H 0.072 0.928 32 H 0.121 0.879 33 H 0.044 0.956 34 H 0.229 0.771 35 H 0.088 0.912 36 H 0.093 0.907 37 H 0.171 0.829 38 H 0.106 0.894 39 H 0.094 0.906 40 H 0.195 0.805 41 H 0.207 0.793 42 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 8.909 -23.367 -7.693 26.165 hybrid contribution -0.457 0.173 -0.189 0.524 sum 8.452 -23.195 -7.883 25.915 Atomic orbital electron populations 1.22222 0.87331 1.01035 0.99981 1.61929 1.07974 1.14968 1.41780 1.19390 0.93573 0.84066 0.94734 1.21513 1.34580 0.97402 1.02425 0.91980 1.25972 0.95070 0.98201 1.00824 1.70106 1.39519 1.11845 1.36267 0.85314 0.78039 0.78227 0.78920 1.18544 1.20588 1.20176 1.22810 0.96925 0.98774 0.91746 1.21662 0.93968 0.92572 0.85280 0.92711 1.86664 1.74531 1.35512 1.39666 1.22459 0.88165 0.99941 0.97688 1.60104 1.18845 1.48617 1.05637 1.20870 0.88064 0.98512 0.94342 1.21159 0.93869 0.89803 0.94241 1.22443 0.99508 0.97041 0.99643 1.22019 0.90932 1.00305 0.93085 1.22199 1.04273 0.91991 1.02518 1.18627 0.84179 0.86927 0.98564 1.91585 1.60426 1.66821 1.92167 1.66655 1.00499 1.38224 1.20331 0.97499 0.89527 0.92840 0.98194 1.02399 0.92776 0.87878 0.95576 0.77135 0.91175 0.90732 0.82887 0.89437 0.90573 0.80520 0.79270 0.80989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.60 9.31 127.69 1.19 2.79 16 2 N -0.54 -23.66 4.59 -927.06 -4.25 -27.91 16 3 C 0.21 11.66 4.55 85.56 0.39 12.04 16 4 C -0.52 -30.95 8.58 25.60 0.22 -30.73 16 5 H 0.06 3.62 7.10 -2.91 -0.02 3.60 16 6 C 0.00 -0.19 5.46 84.66 0.46 0.27 16 7 N -0.94 -59.06 13.29 21.45 0.28 -58.78 16 8 Si 0.97 46.21 29.54 68.60 2.03 48.23 16 9 H -0.26 -11.89 7.11 99.48 0.71 -11.18 16 10 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 11 H -0.28 -12.65 7.11 99.48 0.71 -11.95 16 12 C 0.03 0.88 4.65 86.30 0.40 1.28 16 13 C 0.13 4.07 3.31 30.59 0.10 4.17 16 14 H 0.05 2.41 6.73 -2.39 -0.02 2.40 16 15 O -0.56 -17.29 12.58 -148.98 -1.87 -19.16 16 16 C 0.05 1.09 5.39 86.30 0.47 1.55 16 17 N -0.70 -16.77 6.49 -517.94 -3.36 -20.13 16 18 C 0.11 2.08 5.99 85.56 0.51 2.59 16 19 C 0.15 3.01 6.29 42.53 0.27 3.28 16 20 C -0.17 -2.00 9.72 22.36 0.22 -1.79 16 21 C -0.04 -0.37 10.17 22.45 0.23 -0.14 16 22 C -0.19 -2.78 10.09 22.41 0.23 -2.55 16 23 C 0.27 6.58 8.41 84.72 0.71 7.29 16 24 F -0.13 -3.54 17.29 44.97 0.78 -2.76 16 25 N -0.54 -15.02 10.29 -184.95 -1.90 -16.92 16 26 H 0.01 0.25 8.08 -2.39 -0.02 0.23 16 27 H 0.09 2.49 7.85 -2.39 -0.02 2.47 16 28 H 0.05 2.20 7.01 -2.39 -0.02 2.18 16 29 H 0.00 0.00 6.60 -2.39 -0.02 -0.02 16 30 H -0.04 -2.51 8.07 -2.38 -0.02 -2.53 16 31 H 0.26 15.57 8.31 -92.71 -0.77 14.80 16 32 H 0.10 2.53 7.75 -2.39 -0.02 2.51 16 33 H 0.03 0.91 8.00 -2.39 -0.02 0.90 16 34 H 0.38 7.64 9.05 -74.06 -0.67 6.97 16 35 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.35 7.92 8.11 -89.69 -0.73 7.19 16 38 H 0.09 0.97 8.04 -2.38 -0.02 0.95 16 39 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 40 H 0.18 0.84 8.06 -2.91 -0.02 0.81 16 41 H 0.19 0.18 8.06 -2.91 -0.02 0.16 16 42 H 0.17 1.52 8.06 -2.91 -0.02 1.49 16 Total: -1.00 -80.98 356.60 -3.27 -84.24 By element: Atomic # 1 Polarization: 13.47 SS G_CDS: -0.36 Total: 13.11 kcal Atomic # 6 Polarization: -5.32 SS G_CDS: 5.39 Total: 0.07 kcal Atomic # 7 Polarization: -114.51 SS G_CDS: -9.23 Total: -123.74 kcal Atomic # 8 Polarization: -17.29 SS G_CDS: -1.87 Total: -19.16 kcal Atomic # 9 Polarization: -3.54 SS G_CDS: 0.78 Total: -2.76 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.23 kcal Total: -80.98 -3.27 -84.24 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000819182934.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.293 kcal (2) G-P(sol) polarization free energy of solvation -80.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.245 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds