Wall clock time and date at job start Tue Mar 31 2020 05:14:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31615 * 1 3 3 Si 1.86802 * 120.00036 * 2 1 4 4 H 1.48501 * 109.46826 * 274.90237 * 3 2 1 5 5 H 1.48508 * 109.47111 * 34.89654 * 3 2 1 6 6 H 1.48499 * 109.47529 * 154.90054 * 3 2 1 7 7 C 1.38813 * 120.00496 * 179.97438 * 2 1 3 8 8 H 1.08008 * 119.99404 * 339.75478 * 7 2 1 9 9 N 1.36929 * 120.00311 * 159.75379 * 7 2 1 10 10 C 1.46930 * 120.62975 * 152.78339 * 9 7 2 11 11 C 1.53199 * 108.77109 * 126.39134 * 10 9 7 12 12 C 1.53038 * 109.31343 * 54.63653 * 11 10 9 13 13 C 1.53042 * 109.53656 * 298.63209 * 12 11 10 14 14 H 1.08993 * 109.50026 * 301.37766 * 13 12 11 15 15 N 1.46502 * 109.49573 * 181.31809 * 13 12 11 16 16 C 1.34776 * 120.00082 * 155.33893 * 15 13 12 17 17 O 1.21287 * 119.99928 * 359.72821 * 16 15 13 18 18 C 1.50700 * 120.00348 * 179.72296 * 16 15 13 19 19 N 1.46893 * 109.47367 * 180.02562 * 18 16 15 20 20 C 1.47011 * 111.00075 * 293.63416 * 19 18 16 21 21 C 1.53098 * 109.26097 * 177.60625 * 20 19 18 22 22 O 1.43013 * 109.25570 * 56.85123 * 21 20 19 23 23 C 1.43017 * 113.73820 * 301.32857 * 22 21 20 24 24 C 1.47012 * 111.00261 * 170.00020 * 19 18 16 25 25 C 1.46936 * 120.60538 * 332.76179 * 9 7 2 26 26 H 0.97004 * 120.00320 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.59092 * 6.60765 * 10 9 7 28 28 H 1.08996 * 109.58830 * 246.17382 * 10 9 7 29 29 H 1.09000 * 109.49841 * 294.68276 * 11 10 9 30 30 H 1.09004 * 109.51874 * 174.60208 * 11 10 9 31 31 H 1.08999 * 109.46229 * 178.61369 * 12 11 10 32 32 H 1.09003 * 109.46393 * 58.65492 * 12 11 10 33 33 H 0.97003 * 120.00095 * 335.06562 * 15 13 12 34 34 H 1.08999 * 109.46791 * 300.00440 * 18 16 15 35 35 H 1.09001 * 109.46842 * 60.00225 * 18 16 15 36 36 H 1.09000 * 109.51226 * 297.54776 * 20 19 18 37 37 H 1.09007 * 109.50569 * 57.67233 * 20 19 18 38 38 H 1.09004 * 109.50546 * 296.91376 * 21 20 19 39 39 H 1.08999 * 109.50558 * 176.78404 * 21 20 19 40 40 H 1.09002 * 109.50864 * 298.73885 * 23 22 21 41 41 H 1.08994 * 109.54097 * 178.62789 * 23 22 21 42 42 H 1.09003 * 109.50548 * 302.33081 * 24 19 18 43 43 H 1.09003 * 109.50580 * 62.41277 * 24 19 18 44 44 H 1.09008 * 109.55869 * 113.80704 * 25 9 7 45 45 H 1.08998 * 109.61579 * 353.38610 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.3940 2.1062 -1.3950 5 1 1.5032 2.6206 0.8010 6 1 3.5957 1.4126 0.5939 7 6 2.0103 -1.2021 0.0005 8 1 1.5203 -2.1084 0.3246 9 7 3.3162 -1.2389 -0.4098 10 6 4.2335 -2.2655 0.1034 11 6 4.8800 -2.9867 -1.0836 12 6 5.5403 -1.9567 -2.0029 13 6 4.4778 -0.9962 -2.5419 14 1 3.7182 -1.5604 -3.0829 15 7 5.1058 -0.0300 -3.4465 16 6 4.3723 0.5735 -4.4026 17 8 3.1933 0.3130 -4.5173 18 6 5.0169 1.5720 -5.3292 19 7 4.0137 2.0832 -6.2727 20 6 3.5537 1.0212 -7.1792 21 6 2.4689 1.5808 -8.1033 22 8 2.9888 2.7095 -8.8114 23 6 3.4454 3.7633 -7.9592 24 6 4.5400 3.2257 -7.0336 25 6 3.8260 -0.2524 -1.3721 26 1 -0.4851 0.8401 -0.0004 27 1 3.6781 -2.9825 0.7080 28 1 5.0068 -1.7943 0.7099 29 1 4.1163 -3.5323 -1.6377 30 1 5.6335 -3.6849 -0.7190 31 1 6.0223 -2.4692 -2.8355 32 1 6.2868 -1.3946 -1.4417 33 1 6.0488 0.1783 -3.3548 34 1 5.4221 2.3994 -4.7466 35 1 5.8222 1.0879 -5.8816 36 1 4.3924 0.6641 -7.7769 37 1 3.1446 0.1964 -6.5956 38 1 1.6081 1.8885 -7.5096 39 1 2.1654 0.8130 -8.8149 40 1 2.6130 4.1344 -7.3612 41 1 3.8478 4.5744 -8.5660 42 1 4.8510 4.0102 -6.3436 43 1 5.3950 2.9041 -7.6283 44 1 4.5658 0.3834 -0.8855 45 1 3.0022 0.3586 -1.7409 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001007116230.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:41 Heat of formation + Delta-G solvation = -72.013084 kcal Electronic energy + Delta-G solvation = -25415.614450 eV Core-core repulsion = 21853.860989 eV Total energy + Delta-G solvation = -3561.753461 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.31158 -40.25238 -39.08264 -36.55960 -35.82865 -34.48305 -32.61322 -32.15384 -31.39645 -29.63609 -27.21677 -26.16736 -25.03181 -24.35644 -23.33928 -21.64746 -21.45646 -20.89657 -18.87970 -18.21185 -17.85211 -17.36909 -17.10568 -16.70955 -16.55438 -16.06361 -15.99052 -15.70190 -15.53347 -15.38066 -14.90984 -14.87538 -14.44950 -14.38892 -14.05560 -13.81937 -13.45476 -13.28312 -13.07055 -12.67984 -12.58979 -12.47391 -12.36534 -12.27939 -11.80536 -11.69814 -11.65450 -11.59951 -11.35878 -10.99069 -10.81739 -10.58341 -10.12309 -9.39268 -8.94720 -8.22610 -5.53351 1.25041 1.28996 1.39439 1.64451 2.01337 2.36726 2.75112 2.92787 3.03874 3.36602 3.72151 3.83747 3.92112 3.94708 4.04527 4.10281 4.15755 4.17733 4.22968 4.33085 4.34835 4.40640 4.44339 4.60212 4.67244 4.71363 4.77604 4.80036 4.83717 4.89435 4.97073 5.01947 5.09674 5.14989 5.22662 5.45605 5.56171 5.77024 5.83273 5.91773 6.07508 6.11978 6.63714 6.87686 7.35863 7.58780 7.97365 8.97243 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016785 B = 0.004510 C = 0.003953 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1667.774822 B = 6206.788008 C = 7080.868609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.956 5.956 2 C -0.035 4.035 3 Si 0.949 3.051 4 H -0.297 1.297 5 H -0.308 1.308 6 H -0.249 1.249 7 C -0.250 4.250 8 H 0.055 0.945 9 N -0.619 5.619 10 C 0.136 3.864 11 C -0.125 4.125 12 C -0.105 4.105 13 C 0.138 3.862 14 H 0.050 0.950 15 N -0.712 5.712 16 C 0.498 3.502 17 O -0.571 6.571 18 C 0.047 3.953 19 N -0.551 5.551 20 C 0.020 3.980 21 C 0.067 3.933 22 O -0.399 6.399 23 C 0.057 3.943 24 C 0.022 3.978 25 C 0.121 3.879 26 H 0.260 0.740 27 H 0.055 0.945 28 H 0.045 0.955 29 H 0.045 0.955 30 H 0.103 0.897 31 H 0.090 0.910 32 H 0.087 0.913 33 H 0.418 0.582 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.051 0.949 37 H 0.077 0.923 38 H 0.042 0.958 39 H 0.113 0.887 40 H 0.047 0.953 41 H 0.126 0.874 42 H 0.105 0.895 43 H 0.058 0.942 44 H 0.038 0.962 45 H 0.032 0.968 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.027 3.733 -14.466 24.986 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.602 5.602 2 C -0.230 4.230 3 Si 0.779 3.221 4 H -0.225 1.225 5 H -0.237 1.237 6 H -0.173 1.173 7 C -0.380 4.380 8 H 0.073 0.927 9 N -0.344 5.344 10 C 0.012 3.988 11 C -0.165 4.165 12 C -0.143 4.143 13 C 0.031 3.969 14 H 0.069 0.931 15 N -0.366 5.366 16 C 0.284 3.716 17 O -0.449 6.449 18 C -0.084 4.084 19 N -0.277 5.277 20 C -0.108 4.108 21 C -0.010 4.010 22 O -0.318 6.318 23 C -0.020 4.020 24 C -0.105 4.105 25 C -0.006 4.006 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.063 0.937 29 H 0.064 0.936 30 H 0.121 0.879 31 H 0.108 0.892 32 H 0.105 0.895 33 H 0.256 0.744 34 H 0.147 0.853 35 H 0.115 0.885 36 H 0.069 0.931 37 H 0.095 0.905 38 H 0.060 0.940 39 H 0.131 0.869 40 H 0.066 0.934 41 H 0.144 0.856 42 H 0.123 0.877 43 H 0.076 0.924 44 H 0.055 0.945 45 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges 18.679 3.784 -14.449 23.917 hybrid contribution 0.176 0.577 0.232 0.646 sum 18.855 4.361 -14.217 24.014 Atomic orbital electron populations 1.69963 1.07420 1.27024 1.55795 1.25906 0.95839 1.01027 1.00214 0.85857 0.79488 0.80624 0.76159 1.22522 1.23682 1.17260 1.18900 0.86993 0.93456 1.38651 0.92747 1.44449 1.07820 1.34598 1.47535 1.21263 0.92077 0.90257 0.95157 1.21925 1.00021 0.97834 0.96675 1.21653 0.96299 0.96344 0.99986 1.21298 0.95999 0.90197 0.89395 0.93141 1.45906 1.13985 1.43904 1.32814 1.21361 0.86831 0.81750 0.81611 1.90738 1.18093 1.63990 1.72036 1.22014 0.93481 0.98242 0.94650 1.61746 1.38399 1.09053 1.18538 1.22808 0.98690 0.94914 0.94378 1.22638 0.94779 0.88728 0.94868 1.87932 1.81629 1.28114 1.34130 1.22864 0.96181 0.89970 0.92950 1.22876 0.97167 0.93624 0.96815 1.21643 0.96461 0.92197 0.90279 0.93148 0.92639 0.93687 0.93630 0.87852 0.89187 0.89451 0.74415 0.85299 0.88477 0.93101 0.90490 0.93980 0.86903 0.93443 0.85573 0.87685 0.92372 0.94457 0.94975 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -64.25 13.97 21.65 0.30 -63.95 16 2 C -0.04 -2.20 5.24 84.86 0.44 -1.75 16 3 Si 0.95 50.61 24.35 68.60 1.67 52.28 16 4 H -0.30 -16.21 6.70 99.48 0.67 -15.55 16 5 H -0.31 -16.41 7.11 99.48 0.71 -15.71 16 6 H -0.25 -12.11 6.46 99.48 0.64 -11.46 16 7 C -0.25 -15.00 10.04 84.03 0.84 -14.16 16 8 H 0.05 3.52 8.06 -2.91 -0.02 3.49 16 9 N -0.62 -30.03 2.77 -699.06 -1.94 -31.97 16 10 C 0.14 5.01 6.52 86.36 0.56 5.58 16 11 C -0.13 -3.47 6.08 30.67 0.19 -3.29 16 12 C -0.10 -2.55 5.35 30.62 0.16 -2.38 16 13 C 0.14 4.75 2.60 45.07 0.12 4.87 16 14 H 0.05 2.16 7.58 -2.39 -0.02 2.14 16 15 N -0.71 -18.87 5.08 -442.17 -2.25 -21.12 16 16 C 0.50 15.49 7.50 87.66 0.66 16.15 16 17 O -0.57 -25.07 14.01 -3.05 -0.04 -25.12 16 18 C 0.05 0.96 5.45 85.56 0.47 1.42 16 19 N -0.55 -13.64 4.46 -899.80 -4.01 -17.65 16 20 C 0.02 0.51 5.29 86.31 0.46 0.97 16 21 C 0.07 1.65 7.01 72.02 0.50 2.16 16 22 O -0.40 -9.50 10.83 -148.98 -1.61 -11.11 16 23 C 0.06 1.07 7.01 72.01 0.50 1.57 16 24 C 0.02 0.39 5.64 86.31 0.49 0.87 16 25 C 0.12 5.36 3.76 86.36 0.32 5.68 16 26 H 0.26 16.68 8.31 -92.71 -0.77 15.91 16 27 H 0.06 2.11 7.93 -2.39 -0.02 2.09 16 28 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 29 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 30 H 0.10 2.06 8.14 -2.38 -0.02 2.04 16 31 H 0.09 1.69 8.14 -2.39 -0.02 1.67 16 32 H 0.09 1.74 8.14 -2.39 -0.02 1.72 16 33 H 0.42 6.84 8.60 -92.71 -0.80 6.04 16 34 H 0.13 2.00 8.04 -2.39 -0.02 1.98 16 35 H 0.10 1.35 8.12 -2.39 -0.02 1.33 16 36 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 37 H 0.08 2.47 5.88 -2.38 -0.01 2.46 16 38 H 0.04 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.11 2.33 8.14 -2.39 -0.02 2.31 16 40 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 41 H 0.13 1.58 8.14 -2.39 -0.02 1.56 16 42 H 0.10 1.41 8.09 -2.39 -0.02 1.39 16 43 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 44 H 0.04 1.55 6.98 -2.38 -0.02 1.54 16 45 H 0.03 1.74 4.50 -2.39 -0.01 1.73 16 Total: -1.00 -85.20 344.89 -2.09 -87.29 By element: Atomic # 1 Polarization: 13.58 SS G_CDS: 0.07 Total: 13.66 kcal Atomic # 6 Polarization: 11.97 SS G_CDS: 5.72 Total: 17.69 kcal Atomic # 7 Polarization: -126.79 SS G_CDS: -7.90 Total: -134.68 kcal Atomic # 8 Polarization: -34.57 SS G_CDS: -1.66 Total: -36.23 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 1.67 Total: 52.28 kcal Total: -85.20 -2.09 -87.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001007116230.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.277 kcal (2) G-P(sol) polarization free energy of solvation -85.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.088 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -87.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.013 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds