Wall clock time and date at job start Tue Mar 31 2020 04:23:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00024 * 2 1 4 4 H 1.08004 * 119.99969 * 202.00585 * 3 2 1 5 5 C 1.38816 * 120.00232 * 21.99640 * 3 2 1 6 6 N 1.31619 * 119.99680 * 12.68748 * 5 3 2 7 7 Si 1.86793 * 120.00008 * 192.68807 * 5 3 2 8 8 H 1.48497 * 109.47183 * 60.00283 * 7 5 3 9 9 H 1.48507 * 109.47004 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47241 * 299.99766 * 7 5 3 11 11 C 1.46494 * 119.99907 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.49984 * 179.97438 * 11 2 1 13 13 C 1.53040 * 109.53074 * 300.08346 * 11 2 1 14 14 C 1.53037 * 109.54273 * 181.33107 * 13 11 2 15 15 C 1.53194 * 109.31344 * 298.63836 * 14 13 11 16 16 N 1.46922 * 108.77485 * 54.63085 * 15 14 13 17 17 C 1.34784 * 120.62964 * 126.41728 * 16 15 14 18 18 O 1.21282 * 120.00086 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.99869 * 359.97425 * 17 16 15 20 20 H 1.09006 * 110.50998 * 317.25937 * 19 17 16 21 21 C 1.54085 * 110.56669 * 80.00104 * 19 17 16 22 22 O 1.45709 * 104.00888 * 118.57133 * 21 19 17 23 23 C 1.33766 * 109.47581 * 0.02562 * 22 21 19 24 24 O 1.21509 * 123.07452 * 180.02562 * 23 22 21 25 25 N 1.34009 * 113.85623 * 359.97438 * 23 22 21 26 26 C 1.46930 * 118.74402 * 306.39269 * 16 15 14 27 27 H 1.09007 * 109.47523 * 274.33072 * 1 2 3 28 28 H 1.09001 * 109.47169 * 34.33319 * 1 2 3 29 29 H 1.09000 * 109.47111 * 154.33244 * 1 2 3 30 30 H 0.97004 * 119.99905 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.46102 * 301.35424 * 13 11 2 32 32 H 1.08999 * 109.45501 * 61.30771 * 13 11 2 33 33 H 1.08993 * 109.49991 * 178.68706 * 14 13 11 34 34 H 1.09000 * 109.49413 * 58.58454 * 14 13 11 35 35 H 1.08999 * 109.58632 * 294.84369 * 15 14 13 36 36 H 1.09001 * 109.70535 * 174.49214 * 15 14 13 37 37 H 1.09000 * 110.52749 * 237.20579 * 21 19 17 38 38 H 1.09010 * 110.51909 * 359.80546 * 21 19 17 39 39 H 0.97005 * 125.55632 * 180.02562 * 25 23 22 40 40 H 1.09001 * 109.58159 * 293.82234 * 26 16 15 41 41 H 1.08993 * 109.58748 * 173.39724 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1707 1.2200 -0.3505 5 6 1.5314 2.3444 0.4503 6 7 0.3915 2.2704 1.1041 7 14 2.3172 4.0081 0.1282 8 1 2.4495 4.2179 -1.3359 9 1 1.4650 5.0782 0.7061 10 1 3.6614 4.0509 0.7579 11 6 2.1974 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8271 -2.0727 1.2490 14 6 2.6170 -3.3833 1.2667 15 6 2.2509 -4.2123 0.0316 16 7 2.4677 -3.3933 -1.1688 17 6 3.2395 -3.8442 -2.1776 18 8 3.4103 -3.1588 -3.1635 19 6 3.8902 -5.1999 -2.0804 20 1 4.3022 -5.3552 -1.0833 21 6 2.8808 -6.3110 -2.4280 22 8 3.4585 -6.9589 -3.5982 23 6 4.6118 -6.3603 -3.9157 24 8 5.3011 -6.7046 -4.8552 25 7 4.9372 -5.3453 -3.1033 26 6 1.8266 -2.0737 -1.2490 27 1 -0.3634 0.0776 1.0248 28 1 -0.3633 0.8486 -0.5796 29 1 -0.3633 -0.9263 -0.4451 30 1 -0.0407 3.0799 1.4184 31 1 2.0673 -1.4919 2.1395 32 1 0.7595 -2.2922 1.2360 33 1 2.3701 -3.9447 2.1678 34 1 3.6848 -3.1647 1.2547 35 1 1.2035 -4.5085 0.0876 36 1 2.8800 -5.1013 -0.0141 37 1 2.7927 -7.0188 -1.6038 38 1 1.9077 -5.8819 -2.6675 39 1 5.7332 -4.7960 -3.1779 40 1 0.7445 -2.1955 -1.2974 41 1 2.1776 -1.5504 -2.1383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027392964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:57 Heat of formation + Delta-G solvation = -68.762067 kcal Electronic energy + Delta-G solvation = -25010.320559 eV Core-core repulsion = 21312.874978 eV Total energy + Delta-G solvation = -3697.445581 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.10739 -39.99842 -37.73592 -37.30655 -35.30151 -34.93819 -32.60172 -31.49975 -30.38395 -28.70943 -26.13072 -25.89854 -24.37521 -23.47718 -22.66847 -21.81102 -20.14926 -18.97380 -18.51271 -17.95397 -17.14660 -16.85552 -16.54964 -15.76152 -15.29944 -15.01290 -14.62219 -14.55949 -14.34888 -14.05807 -13.96871 -13.76162 -13.45810 -13.08400 -12.79942 -12.66461 -12.34538 -12.08422 -11.22766 -11.18661 -11.07303 -10.96154 -10.93591 -10.74885 -10.53589 -10.47857 -10.43999 -10.25198 -9.98785 -9.86099 -9.43980 -8.76268 -8.52711 -6.85740 -5.79648 -3.25998 2.19235 2.27386 2.46746 2.78271 3.23913 3.35576 3.41093 3.42927 3.67294 3.97399 4.21187 4.42620 4.56581 4.69860 4.77430 4.91956 5.01497 5.12189 5.34236 5.36930 5.39965 5.60489 5.68181 5.80762 5.98553 6.05976 6.21004 6.34720 6.42714 6.45493 6.65196 6.79575 6.86412 6.89876 7.27441 7.30508 7.64194 7.74552 7.78584 7.95756 8.31917 9.15815 9.78080 10.25367 11.25108 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.003604 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.131598 B = 7767.510136 C = 8363.193105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.259 4.259 4 H 0.068 0.932 5 C 0.005 3.995 6 N -0.907 5.907 7 Si 0.906 3.094 8 H -0.283 1.283 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.170 3.830 12 H 0.065 0.935 13 C -0.133 4.133 14 C -0.133 4.133 15 C 0.101 3.899 16 N -0.597 5.597 17 C 0.499 3.501 18 O -0.520 6.520 19 C 0.074 3.926 20 H 0.128 0.872 21 C 0.055 3.945 22 O -0.323 6.323 23 C 0.652 3.348 24 O -0.520 6.520 25 N -0.709 5.709 26 C 0.095 3.905 27 H 0.030 0.970 28 H 0.044 0.956 29 H -0.002 1.002 30 H 0.253 0.747 31 H 0.068 0.932 32 H 0.058 0.942 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.075 0.925 36 H 0.076 0.924 37 H 0.120 0.880 38 H 0.111 0.889 39 H 0.441 0.559 40 H 0.068 0.932 41 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.891 -17.541 1.398 17.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.313 5.313 3 C -0.388 4.388 4 H 0.086 0.914 5 C -0.194 4.194 6 N -0.552 5.552 7 Si 0.735 3.265 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.060 3.940 12 H 0.083 0.917 13 C -0.173 4.173 14 C -0.172 4.172 15 C -0.021 4.021 16 N -0.331 5.331 17 C 0.283 3.717 18 O -0.396 6.396 19 C -0.036 4.036 20 H 0.145 0.855 21 C -0.021 4.021 22 O -0.233 6.233 23 C 0.404 3.596 24 O -0.404 6.404 25 N -0.382 5.382 26 C -0.028 4.028 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.016 0.984 30 H 0.064 0.936 31 H 0.087 0.913 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.093 0.907 36 H 0.095 0.905 37 H 0.138 0.862 38 H 0.129 0.871 39 H 0.285 0.715 40 H 0.086 0.914 41 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges 2.943 -17.466 0.325 17.715 hybrid contribution 0.560 1.440 0.254 1.566 sum 3.503 -16.026 0.579 16.415 Atomic orbital electron populations 1.20801 0.82493 0.95540 0.99403 1.43880 1.01858 0.99961 1.85648 1.19181 0.97808 0.85213 1.36615 0.91419 1.24983 0.97721 0.98470 0.98183 1.70057 1.18423 1.27245 1.39454 0.86324 0.78441 0.83626 0.78080 1.20986 1.21589 1.20923 1.20563 0.96516 0.86343 0.90564 0.91689 1.22141 0.99499 0.94583 1.01099 1.21935 1.01232 0.97550 0.96443 1.21904 1.01799 0.93356 0.85082 1.48244 1.48385 1.19313 1.17190 1.20421 0.79995 0.87656 0.83638 1.90783 1.60609 1.57502 1.30674 1.22383 0.90426 0.95122 0.95684 0.85453 1.24271 0.97119 0.93119 0.87566 1.87290 1.35033 1.54884 1.46124 1.18404 0.80271 0.78940 0.81988 1.91090 1.51797 1.68385 1.29119 1.45679 1.25502 1.35746 1.31229 1.22555 0.97030 0.80814 1.02424 0.95148 0.93719 0.98385 0.93642 0.91278 0.92302 0.90945 0.91636 0.90669 0.90545 0.86201 0.87094 0.71496 0.91404 0.89055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.72 8.03 59.85 0.48 4.20 16 2 N -0.59 -13.83 2.82 -173.35 -0.49 -14.32 16 3 C -0.26 -6.86 9.60 -15.06 -0.14 -7.00 16 4 H 0.07 1.78 7.81 -52.48 -0.41 1.37 16 5 C 0.00 0.13 5.10 -17.43 -0.09 0.04 16 6 N -0.91 -25.49 10.64 55.49 0.59 -24.90 16 7 Si 0.91 21.47 29.57 -169.99 -5.03 16.44 16 8 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 9 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 10 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 11 C 0.17 3.10 2.74 -67.81 -0.19 2.92 16 12 H 0.06 1.27 7.86 -51.93 -0.41 0.86 16 13 C -0.13 -2.00 5.15 -26.69 -0.14 -2.14 16 14 C -0.13 -1.31 6.08 -26.61 -0.16 -1.47 16 15 C 0.10 0.80 6.19 -3.71 -0.02 0.78 16 16 N -0.60 -7.07 2.97 -172.77 -0.51 -7.58 16 17 C 0.50 6.15 6.82 -10.99 -0.07 6.07 16 18 O -0.52 -8.98 15.97 5.56 0.09 -8.89 16 19 C 0.07 0.60 3.16 -68.20 -0.22 0.38 16 20 H 0.13 0.58 6.76 -51.93 -0.35 0.23 16 21 C 0.05 0.37 7.42 37.72 0.28 0.65 16 22 O -0.32 -3.65 11.09 -37.82 -0.42 -4.06 16 23 C 0.65 8.58 9.16 53.71 0.49 9.07 16 24 O -0.52 -8.84 18.04 -19.12 -0.34 -9.18 16 25 N -0.71 -7.33 5.63 -59.36 -0.33 -7.66 16 26 C 0.10 1.53 5.79 -3.71 -0.02 1.51 16 27 H 0.03 0.75 7.41 -51.92 -0.38 0.37 16 28 H 0.04 1.13 7.21 -51.93 -0.37 0.76 16 29 H 0.00 -0.04 6.35 -51.93 -0.33 -0.37 16 30 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.06 0.89 7.72 -51.93 -0.40 0.49 16 33 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 36 H 0.08 0.32 5.39 -51.93 -0.28 0.04 16 37 H 0.12 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.11 0.71 7.72 -51.92 -0.40 0.31 16 39 H 0.44 4.14 8.96 -40.82 -0.37 3.78 16 40 H 0.07 1.08 6.50 -51.93 -0.34 0.75 16 41 H 0.09 1.74 7.00 -51.93 -0.36 1.37 16 LS Contribution 329.02 15.07 4.96 4.96 Total: -1.00 -34.60 329.02 -6.95 -41.54 By element: Atomic # 1 Polarization: 4.31 SS G_CDS: -5.66 Total: -1.34 kcal Atomic # 6 Polarization: 14.80 SS G_CDS: 0.20 Total: 15.00 kcal Atomic # 7 Polarization: -53.72 SS G_CDS: -0.75 Total: -54.47 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: -0.68 Total: -22.14 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.60 -6.95 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027392964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.217 kcal (2) G-P(sol) polarization free energy of solvation -34.598 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.545 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.762 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds