Wall clock time and date at job start Tue Mar 31 2020 04:23:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.36936 * 120.00024 * 2 1 4 4 H 1.08004 * 119.99969 * 202.00585 * 3 2 1 5 5 C 1.38816 * 120.00232 * 21.99640 * 3 2 1 6 6 N 1.31619 * 119.99680 * 12.68748 * 5 3 2 7 7 Si 1.86793 * 120.00008 * 192.68807 * 5 3 2 8 8 H 1.48497 * 109.47183 * 60.00283 * 7 5 3 9 9 H 1.48507 * 109.47004 * 179.97438 * 7 5 3 10 10 H 1.48499 * 109.47241 * 299.99766 * 7 5 3 11 11 C 1.46494 * 119.99907 * 179.97438 * 2 1 3 12 12 H 1.09001 * 109.49984 * 179.97438 * 11 2 1 13 13 C 1.53040 * 109.53074 * 300.08346 * 11 2 1 14 14 C 1.53037 * 109.54273 * 181.33107 * 13 11 2 15 15 C 1.53194 * 109.31344 * 298.63836 * 14 13 11 16 16 N 1.46922 * 108.77485 * 54.63085 * 15 14 13 17 17 C 1.34784 * 120.62964 * 126.41728 * 16 15 14 18 18 O 1.21282 * 120.00086 * 179.97438 * 17 16 15 19 19 C 1.50694 * 119.99869 * 359.97425 * 17 16 15 20 20 H 1.09006 * 110.50998 * 317.25937 * 19 17 16 21 21 C 1.54085 * 110.56669 * 80.00104 * 19 17 16 22 22 O 1.45709 * 104.00888 * 118.57133 * 21 19 17 23 23 C 1.33766 * 109.47581 * 0.02562 * 22 21 19 24 24 O 1.21509 * 123.07452 * 180.02562 * 23 22 21 25 25 N 1.34009 * 113.85623 * 359.97438 * 23 22 21 26 26 C 1.46930 * 118.74402 * 306.39269 * 16 15 14 27 27 H 1.09007 * 109.47523 * 274.33072 * 1 2 3 28 28 H 1.09001 * 109.47169 * 34.33319 * 1 2 3 29 29 H 1.09000 * 109.47111 * 154.33244 * 1 2 3 30 30 H 0.97004 * 119.99905 * 180.02562 * 6 5 3 31 31 H 1.08997 * 109.46102 * 301.35424 * 13 11 2 32 32 H 1.08999 * 109.45501 * 61.30771 * 13 11 2 33 33 H 1.08993 * 109.49991 * 178.68706 * 14 13 11 34 34 H 1.09000 * 109.49413 * 58.58454 * 14 13 11 35 35 H 1.08999 * 109.58632 * 294.84369 * 15 14 13 36 36 H 1.09001 * 109.70535 * 174.49214 * 15 14 13 37 37 H 1.09000 * 110.52749 * 237.20579 * 21 19 17 38 38 H 1.09010 * 110.51909 * 359.80546 * 21 19 17 39 39 H 0.97005 * 125.55632 * 180.02562 * 25 23 22 40 40 H 1.09001 * 109.58159 * 293.82234 * 26 16 15 41 41 H 1.08993 * 109.58748 * 173.39724 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1707 1.2200 -0.3505 5 6 1.5314 2.3444 0.4503 6 7 0.3915 2.2704 1.1041 7 14 2.3172 4.0081 0.1282 8 1 2.4495 4.2179 -1.3359 9 1 1.4650 5.0782 0.7061 10 1 3.6614 4.0509 0.7579 11 6 2.1974 -1.2687 0.0006 12 1 3.2692 -1.0701 0.0000 13 6 1.8271 -2.0727 1.2490 14 6 2.6170 -3.3833 1.2667 15 6 2.2509 -4.2123 0.0316 16 7 2.4677 -3.3933 -1.1688 17 6 3.2395 -3.8442 -2.1776 18 8 3.4103 -3.1588 -3.1635 19 6 3.8902 -5.1999 -2.0804 20 1 4.3022 -5.3552 -1.0833 21 6 2.8808 -6.3110 -2.4280 22 8 3.4585 -6.9589 -3.5982 23 6 4.6118 -6.3603 -3.9157 24 8 5.3011 -6.7046 -4.8552 25 7 4.9372 -5.3453 -3.1033 26 6 1.8266 -2.0737 -1.2490 27 1 -0.3634 0.0776 1.0248 28 1 -0.3633 0.8486 -0.5796 29 1 -0.3633 -0.9263 -0.4451 30 1 -0.0407 3.0799 1.4184 31 1 2.0673 -1.4919 2.1395 32 1 0.7595 -2.2922 1.2360 33 1 2.3701 -3.9447 2.1678 34 1 3.6848 -3.1647 1.2547 35 1 1.2035 -4.5085 0.0876 36 1 2.8800 -5.1013 -0.0141 37 1 2.7927 -7.0188 -1.6038 38 1 1.9077 -5.8819 -2.6675 39 1 5.7332 -4.7960 -3.1779 40 1 0.7445 -2.1955 -1.2974 41 1 2.1776 -1.5504 -2.1383 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027392964.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:23:56 Heat of formation + Delta-G solvation = -96.428770 kcal Electronic energy + Delta-G solvation = -25011.520277 eV Core-core repulsion = 21312.874978 eV Total energy + Delta-G solvation = -3698.645299 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 1.67 seconds Orbital eigenvalues (eV) -42.93841 -41.04016 -38.98536 -38.33139 -36.82212 -35.79180 -34.03830 -32.86315 -31.42778 -29.98902 -28.06147 -26.85199 -25.49183 -24.76408 -23.54708 -23.01708 -21.35268 -20.13965 -19.29686 -18.95628 -18.63791 -18.04130 -17.57260 -17.01787 -16.62031 -16.24025 -15.79441 -15.56852 -15.36461 -15.27980 -15.10760 -14.83709 -14.50143 -14.45433 -14.07540 -13.71393 -13.67910 -13.32212 -12.86818 -12.80618 -12.51071 -12.28509 -12.15158 -12.04803 -11.95060 -11.90220 -11.76793 -11.65153 -11.45702 -11.36482 -10.67802 -10.32775 -9.76020 -8.77163 -7.85299 -5.32542 1.26853 1.38296 1.43485 1.46203 1.52157 1.62251 1.87069 2.47827 2.54597 3.04465 3.19446 3.28120 3.62331 3.72891 3.91497 4.04159 4.10099 4.18755 4.23361 4.40665 4.42477 4.46521 4.67347 4.76290 4.78405 4.90727 4.94257 5.05123 5.20466 5.31509 5.43997 5.50555 5.54623 5.62622 5.63964 5.74021 6.06812 6.30456 6.34970 6.86808 7.01148 7.13706 7.86115 8.26768 9.16806 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.026208 B = 0.003604 C = 0.003347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1068.131598 B = 7767.510136 C = 8363.193105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.611 5.611 3 C -0.267 4.267 4 H 0.062 0.938 5 C -0.046 4.046 6 N -0.933 5.933 7 Si 0.963 3.037 8 H -0.284 1.284 9 H -0.291 1.291 10 H -0.276 1.276 11 C 0.167 3.833 12 H 0.044 0.956 13 C -0.125 4.125 14 C -0.124 4.124 15 C 0.096 3.904 16 N -0.592 5.592 17 C 0.496 3.504 18 O -0.580 6.580 19 C 0.083 3.917 20 H 0.182 0.818 21 C 0.051 3.949 22 O -0.336 6.336 23 C 0.650 3.350 24 O -0.571 6.571 25 N -0.704 5.704 26 C 0.112 3.888 27 H 0.007 0.993 28 H 0.010 0.990 29 H 0.033 0.967 30 H 0.249 0.751 31 H 0.038 0.962 32 H 0.059 0.941 33 H 0.107 0.893 34 H 0.065 0.935 35 H 0.098 0.902 36 H 0.131 0.869 37 H 0.179 0.821 38 H 0.114 0.886 39 H 0.443 0.557 40 H 0.071 0.929 41 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.126 -20.563 2.974 21.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.334 5.334 3 C -0.397 4.397 4 H 0.080 0.920 5 C -0.242 4.242 6 N -0.580 5.580 7 Si 0.791 3.209 8 H -0.211 1.211 9 H -0.217 1.217 10 H -0.201 1.201 11 C 0.059 3.941 12 H 0.063 0.937 13 C -0.165 4.165 14 C -0.163 4.163 15 C -0.025 4.025 16 N -0.325 5.325 17 C 0.282 3.718 18 O -0.460 6.460 19 C -0.026 4.026 20 H 0.199 0.801 21 C -0.023 4.023 22 O -0.246 6.246 23 C 0.403 3.597 24 O -0.460 6.460 25 N -0.375 5.375 26 C -0.013 4.013 27 H 0.026 0.974 28 H 0.029 0.971 29 H 0.052 0.948 30 H 0.058 0.942 31 H 0.056 0.944 32 H 0.078 0.922 33 H 0.125 0.875 34 H 0.084 0.916 35 H 0.116 0.884 36 H 0.149 0.851 37 H 0.197 0.803 38 H 0.132 0.868 39 H 0.287 0.713 40 H 0.089 0.911 41 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 3.177 -20.540 1.956 20.876 hybrid contribution 0.459 2.373 -0.212 2.426 sum 3.636 -18.168 1.744 18.610 Atomic orbital electron populations 1.20492 0.82529 0.95797 0.97634 1.44090 1.02168 1.01083 1.86024 1.19439 0.97741 0.86918 1.35636 0.92036 1.25646 0.98476 1.01366 0.98680 1.70199 1.19587 1.27460 1.40721 0.85416 0.77829 0.79999 0.77649 1.21057 1.21703 1.20147 1.20736 0.94804 0.85215 0.93356 0.93729 1.21958 1.00495 0.96659 0.97361 1.21910 1.00195 0.94977 0.99218 1.22346 1.04635 0.93745 0.81760 1.48248 1.47642 1.17852 1.18747 1.21251 0.79092 0.88899 0.82526 1.90774 1.62475 1.59636 1.33076 1.22700 0.90058 0.92408 0.97402 0.80138 1.24845 0.96175 0.93610 0.87695 1.87263 1.34138 1.55112 1.48043 1.18533 0.80413 0.79215 0.81573 1.91041 1.53624 1.70001 1.31299 1.45730 1.25828 1.34737 1.31205 1.21954 0.97229 0.82904 0.99253 0.97425 0.97086 0.94831 0.94203 0.94354 0.92179 0.87485 0.91641 0.88411 0.85088 0.80342 0.86757 0.71279 0.91082 0.92873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.47 8.03 127.77 1.03 9.50 16 2 N -0.61 -29.35 2.82 -702.34 -1.98 -31.33 16 3 C -0.27 -14.62 9.60 84.03 0.81 -13.81 16 4 H 0.06 3.35 7.81 -2.91 -0.02 3.33 16 5 C -0.05 -2.57 5.10 84.86 0.43 -2.13 16 6 N -0.93 -54.12 10.64 21.65 0.23 -53.89 16 7 Si 0.96 45.18 29.57 68.60 2.03 47.21 16 8 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 9 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 10 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 11 C 0.17 6.10 2.74 45.07 0.12 6.23 16 12 H 0.04 1.78 7.86 -2.39 -0.02 1.76 16 13 C -0.13 -3.56 5.15 30.62 0.16 -3.40 16 14 C -0.12 -1.87 6.08 30.67 0.19 -1.68 16 15 C 0.10 0.92 6.19 86.36 0.53 1.46 16 16 N -0.59 -12.14 2.97 -818.90 -2.43 -14.58 16 17 C 0.50 10.93 6.82 87.65 0.60 11.52 16 18 O -0.58 -19.98 15.97 -3.04 -0.05 -20.03 16 19 C 0.08 0.95 3.16 44.50 0.14 1.09 16 20 H 0.18 0.24 6.76 -2.38 -0.02 0.22 16 21 C 0.05 0.40 7.42 72.35 0.54 0.94 16 22 O -0.34 -6.59 11.09 -47.27 -0.52 -7.11 16 23 C 0.65 16.17 9.16 129.91 1.19 17.35 16 24 O -0.57 -19.55 18.04 19.66 0.35 -19.20 16 25 N -0.70 -12.92 5.63 -573.43 -3.23 -16.14 16 26 C 0.11 3.52 5.79 86.36 0.50 4.02 16 27 H 0.01 0.38 7.41 -2.38 -0.02 0.37 16 28 H 0.01 0.55 7.21 -2.39 -0.02 0.54 16 29 H 0.03 1.30 6.35 -2.39 -0.02 1.28 16 30 H 0.25 14.08 8.31 -92.71 -0.77 13.31 16 31 H 0.04 1.31 8.14 -2.39 -0.02 1.29 16 32 H 0.06 1.69 7.72 -2.39 -0.02 1.67 16 33 H 0.11 1.01 8.14 -2.39 -0.02 0.99 16 34 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.13 -0.08 5.39 -2.39 -0.01 -0.09 16 37 H 0.18 -0.59 8.14 -2.39 -0.02 -0.61 16 38 H 0.11 0.90 7.72 -2.38 -0.02 0.88 16 39 H 0.44 7.72 8.96 -92.70 -0.83 6.88 16 40 H 0.07 2.18 6.50 -2.39 -0.02 2.17 16 41 H 0.05 2.09 7.00 -2.39 -0.02 2.08 16 Total: -1.00 -84.35 329.02 0.87 -83.48 By element: Atomic # 1 Polarization: 0.28 SS G_CDS: 0.23 Total: 0.51 kcal Atomic # 6 Polarization: 24.85 SS G_CDS: 6.23 Total: 31.08 kcal Atomic # 7 Polarization: -108.53 SS G_CDS: -7.41 Total: -115.94 kcal Atomic # 8 Polarization: -46.12 SS G_CDS: -0.22 Total: -46.34 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -84.35 0.87 -83.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027392964.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.948 kcal (2) G-P(sol) polarization free energy of solvation -84.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.295 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.866 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.67 seconds