Wall clock time and date at job start Tue Mar 31 2020 04:24:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36944 * 119.99731 * 2 1 4 4 H 1.07999 * 119.99368 * 202.07020 * 3 2 1 5 5 C 1.38812 * 119.99913 * 22.06960 * 3 2 1 6 6 N 1.31617 * 120.00240 * 12.39846 * 5 3 2 7 7 Si 1.86799 * 119.99740 * 192.39818 * 5 3 2 8 8 H 1.48504 * 109.47238 * 60.00042 * 7 5 3 9 9 H 1.48491 * 109.47110 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47031 * 300.00189 * 7 5 3 11 11 C 1.46500 * 120.00017 * 180.02562 * 2 1 3 12 12 H 1.08997 * 109.49402 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.52079 * 59.85468 * 11 2 1 14 14 C 1.53043 * 109.53217 * 178.66560 * 13 11 2 15 15 C 1.52758 * 109.38528 * 61.24073 * 14 13 11 16 16 N 1.46922 * 109.00836 * 305.58706 * 15 14 13 17 17 C 1.34782 * 120.63241 * 233.58467 * 16 15 14 18 18 O 1.21278 * 120.00284 * 179.72190 * 17 16 15 19 19 C 1.50703 * 119.99587 * 359.71265 * 17 16 15 20 20 H 1.09001 * 110.49955 * 38.72196 * 19 17 16 21 21 C 1.54086 * 110.56847 * 275.81369 * 19 17 16 22 22 O 1.45705 * 104.00678 * 241.42983 * 21 19 17 23 23 C 1.33772 * 109.47599 * 359.97438 * 22 21 19 24 24 O 1.21511 * 123.06785 * 179.97438 * 23 22 21 25 25 N 1.34001 * 113.85795 * 0.02562 * 23 22 21 26 26 C 1.46931 * 118.73953 * 53.30708 * 16 15 14 27 27 H 1.09001 * 109.46840 * 274.30366 * 1 2 3 28 28 H 1.09001 * 109.46951 * 34.30603 * 1 2 3 29 29 H 1.08996 * 109.46677 * 154.30417 * 1 2 3 30 30 H 0.96996 * 119.99930 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.46078 * 298.68570 * 13 11 2 32 32 H 1.08998 * 109.45963 * 58.66159 * 13 11 2 33 33 H 1.09002 * 109.49565 * 181.31427 * 14 13 11 34 34 H 1.08998 * 109.49985 * 301.37823 * 14 13 11 35 35 H 1.08995 * 109.51331 * 185.70428 * 15 14 13 36 36 H 1.09010 * 109.43174 * 65.41863 * 15 14 13 37 37 H 1.08996 * 110.51836 * 0.05740 * 21 19 17 38 38 H 1.09000 * 110.51932 * 122.79502 * 21 19 17 39 39 H 0.97001 * 125.55709 * 179.97438 * 25 23 22 40 40 H 1.09001 * 109.58376 * 66.43458 * 26 16 15 41 41 H 1.08999 * 109.58489 * 186.71116 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1704 1.2202 -0.3515 5 6 1.5319 2.3441 0.4517 6 7 0.3899 2.2701 1.1018 7 14 2.3214 4.0075 0.1369 8 1 2.4586 4.2214 -1.3263 9 1 1.4698 5.0771 0.7162 10 1 3.6637 4.0463 0.7708 11 6 2.1976 -1.2687 -0.0006 12 1 3.2693 -1.0700 -0.0009 13 6 1.8259 -2.0732 -1.2483 14 6 2.6159 -3.3839 -1.2661 15 6 2.2556 -4.2099 -0.0327 16 7 2.4689 -3.3927 1.1695 17 6 3.2425 -3.8427 2.1774 18 8 3.4150 -3.1565 3.1624 19 6 3.8931 -5.1986 2.0803 20 1 4.2405 -5.3834 1.0638 21 6 2.9158 -6.3014 2.5308 22 8 3.5747 -6.9088 3.6796 23 6 4.7434 -6.2959 3.8990 24 8 5.4963 -6.6070 4.8006 25 7 5.0074 -5.3068 3.0344 26 6 1.8279 -2.0730 1.2497 27 1 -0.3633 0.0771 1.0248 28 1 -0.3633 0.8489 -0.5792 29 1 -0.3632 -0.9260 -0.4456 30 1 -0.0416 3.0793 1.4177 31 1 0.7584 -2.2928 -1.2341 32 1 2.0656 -1.4929 -2.1393 33 1 2.3682 -3.9457 -2.1667 34 1 3.6837 -3.1653 -1.2559 35 1 2.8895 -5.0955 0.0103 36 1 1.2091 -4.5095 -0.0899 37 1 1.9595 -5.8681 2.8237 38 1 2.7767 -7.0359 1.7375 39 1 5.8034 -4.7525 3.0373 40 1 0.7459 -2.1949 1.2992 41 1 2.1779 -1.5503 2.1398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027392965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:01 Heat of formation + Delta-G solvation = -68.409922 kcal Electronic energy + Delta-G solvation = -25045.075256 eV Core-core repulsion = 21347.644946 eV Total energy + Delta-G solvation = -3697.430311 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -42.06497 -39.95331 -37.72360 -37.26382 -35.28775 -34.90394 -32.61220 -31.46254 -30.35659 -28.72393 -26.10412 -25.88831 -24.38474 -23.41665 -22.63667 -21.84395 -20.09921 -18.95690 -18.47573 -17.94790 -17.09679 -16.85956 -16.49770 -15.67880 -15.29768 -14.94559 -14.64100 -14.52564 -14.37615 -14.03106 -13.98659 -13.68898 -13.44522 -13.10476 -12.74136 -12.65637 -12.31622 -12.00730 -11.32934 -11.17266 -11.12688 -10.92932 -10.85913 -10.75047 -10.52054 -10.47295 -10.43266 -10.30836 -9.92446 -9.87179 -9.38201 -8.71252 -8.51752 -6.85624 -5.79591 -3.25998 2.21688 2.34108 2.50961 2.83283 3.28157 3.35801 3.41210 3.41644 3.72641 4.01935 4.22395 4.42158 4.59314 4.72223 4.80544 4.91420 5.04022 5.12161 5.33725 5.36868 5.40247 5.59591 5.73977 5.81868 5.95539 6.08033 6.21711 6.34171 6.44438 6.48515 6.65563 6.78982 6.83158 6.93587 7.30396 7.33952 7.63947 7.74307 7.82289 8.02556 8.32038 9.15767 9.77952 10.25455 11.25145 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.023303 B = 0.003739 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.268012 B = 7487.735700 C = 8083.236987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.161 3.839 2 N -0.591 5.591 3 C -0.260 4.260 4 H 0.068 0.932 5 C 0.006 3.994 6 N -0.906 5.906 7 Si 0.906 3.094 8 H -0.284 1.284 9 H -0.290 1.290 10 H -0.283 1.283 11 C 0.169 3.831 12 H 0.065 0.935 13 C -0.135 4.135 14 C -0.132 4.132 15 C 0.101 3.899 16 N -0.598 5.598 17 C 0.497 3.503 18 O -0.518 6.518 19 C 0.073 3.927 20 H 0.127 0.873 21 C 0.056 3.944 22 O -0.323 6.323 23 C 0.652 3.348 24 O -0.520 6.520 25 N -0.709 5.709 26 C 0.096 3.904 27 H 0.029 0.971 28 H 0.045 0.955 29 H -0.001 1.001 30 H 0.254 0.746 31 H 0.060 0.940 32 H 0.066 0.934 33 H 0.072 0.928 34 H 0.065 0.935 35 H 0.077 0.923 36 H 0.074 0.926 37 H 0.111 0.889 38 H 0.120 0.880 39 H 0.441 0.559 40 H 0.065 0.935 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.631 -17.538 -6.059 18.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.312 5.312 3 C -0.390 4.390 4 H 0.086 0.914 5 C -0.193 4.193 6 N -0.550 5.550 7 Si 0.736 3.264 8 H -0.210 1.210 9 H -0.216 1.216 10 H -0.209 1.209 11 C 0.059 3.941 12 H 0.083 0.917 13 C -0.174 4.174 14 C -0.171 4.171 15 C -0.021 4.021 16 N -0.333 5.333 17 C 0.281 3.719 18 O -0.393 6.393 19 C -0.037 4.037 20 H 0.144 0.856 21 C -0.020 4.020 22 O -0.233 6.233 23 C 0.404 3.596 24 O -0.404 6.404 25 N -0.382 5.382 26 C -0.027 4.027 27 H 0.047 0.953 28 H 0.064 0.936 29 H 0.018 0.982 30 H 0.064 0.936 31 H 0.079 0.921 32 H 0.085 0.915 33 H 0.091 0.909 34 H 0.084 0.916 35 H 0.095 0.905 36 H 0.093 0.907 37 H 0.129 0.871 38 H 0.138 0.862 39 H 0.285 0.715 40 H 0.083 0.917 41 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges 2.721 -17.439 -4.831 18.299 hybrid contribution 0.550 1.437 -0.374 1.583 sum 3.271 -16.002 -5.204 17.142 Atomic orbital electron populations 1.20808 0.82463 0.95693 0.99356 1.43943 1.01894 0.99960 1.85432 1.19175 0.97934 0.85117 1.36747 0.91386 1.25024 0.97703 0.98580 0.98018 1.70049 1.18252 1.27353 1.39346 0.86311 0.78569 0.83606 0.77902 1.21028 1.21560 1.20880 1.20620 0.96551 0.86283 0.90600 0.91722 1.22104 0.99722 0.94874 1.00718 1.21836 1.01211 0.97427 0.96613 1.21796 1.01784 0.93450 0.85112 1.48370 1.48363 1.19516 1.17012 1.20435 0.80120 0.87625 0.83728 1.90797 1.60455 1.57381 1.30674 1.22422 0.89167 0.95330 0.96759 0.85581 1.24246 0.96213 0.93845 0.87659 1.87288 1.32002 1.56035 1.48015 1.18400 0.80776 0.78737 0.81653 1.91089 1.48062 1.68781 1.32505 1.45684 1.22821 1.37448 1.32236 1.22691 0.96884 0.80365 1.02741 0.95300 0.93622 0.98232 0.93564 0.92088 0.91513 0.90894 0.91639 0.90520 0.90743 0.87098 0.86244 0.71537 0.91665 0.88919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.70 7.91 59.85 0.47 4.17 16 2 N -0.59 -13.81 2.82 -173.34 -0.49 -14.30 16 3 C -0.26 -6.89 9.60 -15.06 -0.14 -7.04 16 4 H 0.07 1.77 7.81 -52.49 -0.41 1.36 16 5 C 0.01 0.15 5.11 -17.43 -0.09 0.06 16 6 N -0.91 -25.75 10.63 55.49 0.59 -25.16 16 7 Si 0.91 21.48 29.57 -169.99 -5.03 16.45 16 8 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 9 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 C 0.17 3.10 2.74 -67.81 -0.19 2.91 16 12 H 0.06 1.27 7.86 -51.93 -0.41 0.86 16 13 C -0.13 -1.89 5.13 -26.69 -0.14 -2.03 16 14 C -0.13 -1.24 6.06 -26.83 -0.16 -1.40 16 15 C 0.10 0.81 6.29 -3.94 -0.02 0.78 16 16 N -0.60 -7.41 2.98 -173.03 -0.52 -7.93 16 17 C 0.50 6.47 6.80 -10.98 -0.07 6.40 16 18 O -0.52 -9.49 16.01 5.56 0.09 -9.40 16 19 C 0.07 0.63 3.18 -68.19 -0.22 0.41 16 20 H 0.13 0.60 6.51 -51.93 -0.34 0.27 16 21 C 0.06 0.40 7.79 37.72 0.29 0.69 16 22 O -0.32 -3.80 11.09 -37.83 -0.42 -4.22 16 23 C 0.65 8.89 9.16 53.71 0.49 9.39 16 24 O -0.52 -9.07 18.04 -19.12 -0.34 -9.42 16 25 N -0.71 -7.66 5.66 -59.36 -0.34 -7.99 16 26 C 0.10 1.65 5.79 -3.71 -0.02 1.63 16 27 H 0.03 0.73 7.41 -51.93 -0.39 0.34 16 28 H 0.05 1.15 7.20 -51.93 -0.37 0.77 16 29 H 0.00 -0.01 6.45 -51.93 -0.34 -0.35 16 30 H 0.25 7.07 8.31 -40.82 -0.34 6.73 16 31 H 0.06 0.86 6.71 -51.93 -0.35 0.51 16 32 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.08 0.33 5.45 -51.93 -0.28 0.04 16 36 H 0.07 0.52 8.14 -51.92 -0.42 0.10 16 37 H 0.11 0.78 7.72 -51.93 -0.40 0.38 16 38 H 0.12 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.44 4.32 8.96 -40.82 -0.37 3.96 16 40 H 0.07 1.12 7.52 -51.93 -0.39 0.73 16 41 H 0.09 1.95 7.00 -51.93 -0.36 1.59 16 LS Contribution 329.32 15.07 4.96 4.96 Total: -1.00 -34.99 329.32 -6.94 -41.93 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.65 Total: -0.90 kcal Atomic # 6 Polarization: 15.77 SS G_CDS: 0.20 Total: 15.97 kcal Atomic # 7 Polarization: -54.63 SS G_CDS: -0.75 Total: -55.38 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.68 Total: -23.04 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -34.99 -6.94 -41.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027392965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.479 kcal (2) G-P(sol) polarization free energy of solvation -34.993 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.931 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.410 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds