Wall clock time and date at job start Tue Mar 31 2020 04:24:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46507 * 1 3 3 C 1.36944 * 119.99731 * 2 1 4 4 H 1.07999 * 119.99368 * 202.07020 * 3 2 1 5 5 C 1.38812 * 119.99913 * 22.06960 * 3 2 1 6 6 N 1.31617 * 120.00240 * 12.39846 * 5 3 2 7 7 Si 1.86799 * 119.99740 * 192.39818 * 5 3 2 8 8 H 1.48504 * 109.47238 * 60.00042 * 7 5 3 9 9 H 1.48491 * 109.47110 * 180.02562 * 7 5 3 10 10 H 1.48501 * 109.47031 * 300.00189 * 7 5 3 11 11 C 1.46500 * 120.00017 * 180.02562 * 2 1 3 12 12 H 1.08997 * 109.49402 * 179.97438 * 11 2 1 13 13 C 1.53041 * 109.52079 * 59.85468 * 11 2 1 14 14 C 1.53043 * 109.53217 * 178.66560 * 13 11 2 15 15 C 1.52758 * 109.38528 * 61.24073 * 14 13 11 16 16 N 1.46922 * 109.00836 * 305.58706 * 15 14 13 17 17 C 1.34782 * 120.63241 * 233.58467 * 16 15 14 18 18 O 1.21278 * 120.00284 * 179.72190 * 17 16 15 19 19 C 1.50703 * 119.99587 * 359.71265 * 17 16 15 20 20 H 1.09001 * 110.49955 * 38.72196 * 19 17 16 21 21 C 1.54086 * 110.56847 * 275.81369 * 19 17 16 22 22 O 1.45705 * 104.00678 * 241.42983 * 21 19 17 23 23 C 1.33772 * 109.47599 * 359.97438 * 22 21 19 24 24 O 1.21511 * 123.06785 * 179.97438 * 23 22 21 25 25 N 1.34001 * 113.85795 * 0.02562 * 23 22 21 26 26 C 1.46931 * 118.73953 * 53.30708 * 16 15 14 27 27 H 1.09001 * 109.46840 * 274.30366 * 1 2 3 28 28 H 1.09001 * 109.46951 * 34.30603 * 1 2 3 29 29 H 1.08996 * 109.46677 * 154.30417 * 1 2 3 30 30 H 0.96996 * 119.99930 * 179.97438 * 6 5 3 31 31 H 1.08995 * 109.46078 * 298.68570 * 13 11 2 32 32 H 1.08998 * 109.45963 * 58.66159 * 13 11 2 33 33 H 1.09002 * 109.49565 * 181.31427 * 14 13 11 34 34 H 1.08998 * 109.49985 * 301.37823 * 14 13 11 35 35 H 1.08995 * 109.51331 * 185.70428 * 15 14 13 36 36 H 1.09010 * 109.43174 * 65.41863 * 15 14 13 37 37 H 1.08996 * 110.51836 * 0.05740 * 21 19 17 38 38 H 1.09000 * 110.51932 * 122.79502 * 21 19 17 39 39 H 0.97001 * 125.55709 * 179.97438 * 25 23 22 40 40 H 1.09001 * 109.58376 * 66.43458 * 26 16 15 41 41 H 1.08999 * 109.58489 * 186.71116 * 26 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1704 1.2202 -0.3515 5 6 1.5319 2.3441 0.4517 6 7 0.3899 2.2701 1.1018 7 14 2.3214 4.0075 0.1369 8 1 2.4586 4.2214 -1.3263 9 1 1.4698 5.0771 0.7162 10 1 3.6637 4.0463 0.7708 11 6 2.1976 -1.2687 -0.0006 12 1 3.2693 -1.0700 -0.0009 13 6 1.8259 -2.0732 -1.2483 14 6 2.6159 -3.3839 -1.2661 15 6 2.2556 -4.2099 -0.0327 16 7 2.4689 -3.3927 1.1695 17 6 3.2425 -3.8427 2.1774 18 8 3.4150 -3.1565 3.1624 19 6 3.8931 -5.1986 2.0803 20 1 4.2405 -5.3834 1.0638 21 6 2.9158 -6.3014 2.5308 22 8 3.5747 -6.9088 3.6796 23 6 4.7434 -6.2959 3.8990 24 8 5.4963 -6.6070 4.8006 25 7 5.0074 -5.3068 3.0344 26 6 1.8279 -2.0730 1.2497 27 1 -0.3633 0.0771 1.0248 28 1 -0.3633 0.8489 -0.5792 29 1 -0.3632 -0.9260 -0.4456 30 1 -0.0416 3.0793 1.4177 31 1 0.7584 -2.2928 -1.2341 32 1 2.0656 -1.4929 -2.1393 33 1 2.3682 -3.9457 -2.1667 34 1 3.6837 -3.1653 -1.2559 35 1 2.8895 -5.0955 0.0103 36 1 1.2091 -4.5095 -0.0899 37 1 1.9595 -5.8681 2.8237 38 1 2.7767 -7.0359 1.7375 39 1 5.8034 -4.7525 3.0373 40 1 0.7459 -2.1949 1.2992 41 1 2.1779 -1.5503 2.1398 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027392965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:00 Heat of formation + Delta-G solvation = -96.780584 kcal Electronic energy + Delta-G solvation = -25046.305501 eV Core-core repulsion = 21347.644946 eV Total energy + Delta-G solvation = -3698.660555 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.94474 -41.04030 -38.99430 -38.33636 -36.82510 -35.80700 -34.05341 -32.82788 -31.43826 -30.02058 -28.05648 -26.85278 -25.51828 -24.73657 -23.56097 -23.03117 -21.33840 -20.13103 -19.30672 -18.97799 -18.65581 -18.04392 -17.54705 -16.98636 -16.68506 -16.20315 -15.82590 -15.57899 -15.30186 -15.29016 -15.13787 -14.86298 -14.51440 -14.37790 -14.09807 -13.83013 -13.56864 -13.32467 -12.91293 -12.79864 -12.48147 -12.21170 -12.17949 -12.08389 -12.01476 -11.94641 -11.72323 -11.61915 -11.45772 -11.36401 -10.65122 -10.32700 -9.74390 -8.77898 -7.85657 -5.33336 1.24367 1.38907 1.44280 1.45487 1.52300 1.62300 1.87141 2.47897 2.54188 3.04891 3.18971 3.28338 3.62195 3.70755 3.91275 4.04587 4.11245 4.19352 4.26327 4.41586 4.41818 4.45697 4.68665 4.72047 4.83300 4.91982 4.96964 5.08029 5.23134 5.28564 5.45637 5.48393 5.61089 5.61114 5.61816 5.72991 6.05837 6.30313 6.35780 6.86000 7.02174 7.13396 7.86140 8.26815 9.16662 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.023303 B = 0.003739 C = 0.003463 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1201.268012 B = 7487.735700 C = 8083.236987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.267 4.267 4 H 0.067 0.933 5 C -0.051 4.051 6 N -0.937 5.937 7 Si 0.966 3.034 8 H -0.274 1.274 9 H -0.294 1.294 10 H -0.281 1.281 11 C 0.166 3.834 12 H 0.044 0.956 13 C -0.125 4.125 14 C -0.125 4.125 15 C 0.093 3.907 16 N -0.592 5.592 17 C 0.492 3.508 18 O -0.584 6.584 19 C 0.085 3.915 20 H 0.184 0.816 21 C 0.052 3.948 22 O -0.336 6.336 23 C 0.650 3.350 24 O -0.571 6.571 25 N -0.704 5.704 26 C 0.113 3.887 27 H -0.004 1.004 28 H 0.015 0.985 29 H 0.039 0.961 30 H 0.248 0.752 31 H 0.065 0.935 32 H 0.052 0.948 33 H 0.113 0.887 34 H 0.065 0.935 35 H 0.131 0.869 36 H 0.097 0.903 37 H 0.111 0.889 38 H 0.181 0.819 39 H 0.443 0.557 40 H 0.063 0.937 41 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.920 -20.693 -8.933 22.728 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.397 4.397 4 H 0.085 0.915 5 C -0.246 4.246 6 N -0.584 5.584 7 Si 0.794 3.206 8 H -0.200 1.200 9 H -0.221 1.221 10 H -0.207 1.207 11 C 0.058 3.942 12 H 0.062 0.938 13 C -0.165 4.165 14 C -0.163 4.163 15 C -0.027 4.027 16 N -0.325 5.325 17 C 0.279 3.721 18 O -0.463 6.463 19 C -0.024 4.024 20 H 0.201 0.799 21 C -0.022 4.022 22 O -0.246 6.246 23 C 0.403 3.597 24 O -0.460 6.460 25 N -0.375 5.375 26 C -0.012 4.012 27 H 0.015 0.985 28 H 0.034 0.966 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.084 0.916 32 H 0.071 0.929 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.149 0.851 36 H 0.115 0.885 37 H 0.129 0.871 38 H 0.199 0.801 39 H 0.287 0.713 40 H 0.081 0.919 41 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.009 -20.651 -7.788 22.275 hybrid contribution 0.433 2.387 0.467 2.471 sum 3.442 -18.264 -7.321 19.975 Atomic orbital electron populations 1.20492 0.82503 0.96318 0.97187 1.44175 1.02215 1.01088 1.85765 1.19505 0.97972 0.86707 1.35502 0.91493 1.25750 0.98493 1.01765 0.98580 1.70220 1.19668 1.27498 1.40973 0.85363 0.77490 0.79681 0.78045 1.19987 1.22059 1.20668 1.20821 0.94854 0.85158 0.93365 0.93764 1.21950 1.00831 0.96678 0.97000 1.21842 1.00297 0.95055 0.99115 1.22302 1.04654 0.93904 0.81879 1.48340 1.47456 1.17933 1.18754 1.21331 0.79248 0.88967 0.82565 1.90785 1.62549 1.59703 1.33304 1.22734 0.88467 0.92324 0.98894 0.79948 1.24819 0.95034 0.94589 0.87744 1.87261 1.31209 1.56152 1.49959 1.18535 0.80899 0.79017 0.81274 1.91039 1.49926 1.70405 1.34584 1.45739 1.23310 1.36436 1.32060 1.22019 0.96738 0.82824 0.99656 0.98521 0.96574 0.94220 0.94299 0.91647 0.92889 0.86915 0.91633 0.85112 0.88476 0.87110 0.80138 0.71290 0.91855 0.94159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 8.46 7.91 127.77 1.01 9.47 16 2 N -0.61 -29.27 2.82 -702.34 -1.98 -31.25 16 3 C -0.27 -14.55 9.60 84.03 0.81 -13.74 16 4 H 0.07 3.57 7.81 -2.91 -0.02 3.55 16 5 C -0.05 -2.84 5.11 84.86 0.43 -2.41 16 6 N -0.94 -55.63 10.63 21.65 0.23 -55.40 16 7 Si 0.97 45.32 29.57 68.60 2.03 47.35 16 8 H -0.27 -12.29 7.11 99.48 0.71 -11.59 16 9 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 10 H -0.28 -12.93 7.11 99.48 0.71 -12.23 16 11 C 0.17 6.07 2.74 45.07 0.12 6.19 16 12 H 0.04 1.77 7.86 -2.39 -0.02 1.75 16 13 C -0.13 -3.19 5.13 30.62 0.16 -3.03 16 14 C -0.12 -1.65 6.06 30.53 0.19 -1.47 16 15 C 0.09 0.90 6.29 86.22 0.54 1.44 16 16 N -0.59 -13.08 2.98 -819.74 -2.44 -15.52 16 17 C 0.49 11.84 6.80 87.66 0.60 12.44 16 18 O -0.58 -21.92 16.01 -3.02 -0.05 -21.97 16 19 C 0.08 1.07 3.18 44.50 0.14 1.21 16 20 H 0.18 0.32 6.51 -2.39 -0.02 0.30 16 21 C 0.05 0.48 7.79 72.35 0.56 1.04 16 22 O -0.34 -7.02 11.09 -47.32 -0.52 -7.54 16 23 C 0.65 16.95 9.16 129.91 1.19 18.14 16 24 O -0.57 -20.18 18.04 19.65 0.35 -19.82 16 25 N -0.70 -13.74 5.66 -573.42 -3.24 -16.99 16 26 C 0.11 3.89 5.79 86.36 0.50 4.39 16 27 H 0.00 -0.19 7.41 -2.39 -0.02 -0.21 16 28 H 0.02 0.82 7.20 -2.39 -0.02 0.80 16 29 H 0.04 1.50 6.45 -2.39 -0.02 1.49 16 30 H 0.25 14.40 8.31 -92.71 -0.77 13.63 16 31 H 0.06 1.61 6.71 -2.39 -0.02 1.60 16 32 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.11 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 35 H 0.13 -0.07 5.45 -2.39 -0.01 -0.08 16 36 H 0.10 0.66 8.14 -2.38 -0.02 0.64 16 37 H 0.11 1.09 7.72 -2.39 -0.02 1.07 16 38 H 0.18 -0.45 8.14 -2.39 -0.02 -0.47 16 39 H 0.44 8.17 8.96 -92.71 -0.83 7.34 16 40 H 0.06 2.18 7.52 -2.39 -0.02 2.16 16 41 H 0.04 1.80 7.00 -2.39 -0.02 1.79 16 Total: -1.00 -86.85 329.32 0.86 -86.00 By element: Atomic # 1 Polarization: 1.25 SS G_CDS: 0.23 Total: 1.48 kcal Atomic # 6 Polarization: 27.41 SS G_CDS: 6.25 Total: 33.66 kcal Atomic # 7 Polarization: -111.72 SS G_CDS: -7.43 Total: -119.15 kcal Atomic # 8 Polarization: -49.12 SS G_CDS: -0.22 Total: -49.34 kcal Atomic # 14 Polarization: 45.32 SS G_CDS: 2.03 Total: 47.35 kcal Total: -86.85 0.86 -86.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027392965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.785 kcal (2) G-P(sol) polarization free energy of solvation -86.855 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.640 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.995 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.781 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds