Wall clock time and date at job start Tue Mar 31 2020 04:11:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 O 1.21285 * 120.00176 * 2 1 4 4 N 1.34778 * 120.00055 * 180.27487 * 2 1 3 5 5 C 1.47160 * 120.97900 * 355.64685 * 4 2 1 6 6 C 1.52882 * 108.60412 * 230.49778 * 5 4 2 7 7 O 1.42962 * 109.30122 * 307.93903 * 6 5 4 8 8 C 1.42959 * 114.16478 * 62.44807 * 7 6 5 9 9 C 1.47154 * 120.98483 * 175.92646 * 4 2 1 10 10 H 1.08989 * 109.68472 * 249.16481 * 9 4 2 11 11 C 1.50698 * 109.67976 * 9.68603 * 9 4 2 12 12 O 1.21281 * 120.00568 * 64.39604 * 11 9 4 13 13 N 1.34784 * 119.99842 * 244.40220 * 11 9 4 14 14 C 1.46496 * 120.00002 * 180.02562 * 13 11 9 15 15 C 1.53952 * 113.73779 * 251.67288 * 14 13 11 16 16 N 1.47585 * 86.11349 * 222.04793 * 15 14 13 17 17 C 1.36940 * 134.48973 * 204.63979 * 16 15 14 18 18 H 1.07996 * 119.99857 * 179.97438 * 17 16 15 19 19 C 1.38812 * 120.00005 * 0.02562 * 17 16 15 20 20 N 1.31623 * 120.00073 * 359.97438 * 19 17 16 21 21 Si 1.86802 * 120.00109 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46902 * 359.97438 * 21 19 17 23 23 H 1.48501 * 109.47084 * 119.99171 * 21 19 17 24 24 H 1.48490 * 109.47246 * 239.99807 * 21 19 17 25 25 C 1.47578 * 91.01680 * 24.64075 * 16 15 14 26 26 H 1.09001 * 109.47183 * 269.72667 * 1 2 3 27 27 H 1.09001 * 109.46999 * 29.72566 * 1 2 3 28 28 H 1.09003 * 109.47026 * 149.72383 * 1 2 3 29 29 H 1.08994 * 109.67934 * 350.28301 * 5 4 2 30 30 H 1.08994 * 109.67764 * 110.83768 * 5 4 2 31 31 H 1.08998 * 109.57881 * 187.92055 * 6 5 4 32 32 H 1.09005 * 109.36570 * 67.82255 * 6 5 4 33 33 H 1.09006 * 109.50737 * 177.49844 * 8 7 6 34 34 H 1.08995 * 109.51558 * 57.34778 * 8 7 6 35 35 H 0.96996 * 119.99363 * 359.97438 * 13 11 9 36 36 H 1.08998 * 112.94540 * 23.40319 * 14 13 11 37 37 H 1.08992 * 113.77053 * 336.34973 * 15 14 13 38 38 H 1.09002 * 113.76613 * 107.74751 * 15 14 13 39 39 H 0.97003 * 120.00078 * 180.02562 * 20 19 17 40 40 H 1.08996 * 113.76836 * 221.06273 * 25 16 15 41 41 H 1.08993 * 113.76798 * 89.65740 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1809 -1.1672 -0.0056 5 6 1.4701 -2.4527 0.0840 6 6 2.1128 -3.2892 1.1905 7 8 3.5241 -3.3573 0.9723 8 6 4.1862 -2.0914 1.0254 9 6 3.6495 -1.1936 -0.0953 10 1 3.9510 -1.5945 -1.0630 11 6 4.1931 0.2024 0.0674 12 8 4.0442 0.7928 1.1164 13 7 4.8446 0.7951 -0.9528 14 6 5.3736 2.1520 -0.7944 15 6 4.5958 3.2170 -1.5888 16 7 5.9160 3.7797 -1.9331 17 6 6.3644 5.0208 -2.2991 18 1 7.4133 5.1774 -2.5033 19 6 5.4710 6.0777 -2.4065 20 7 4.1928 5.8869 -2.1571 21 14 6.0827 7.7709 -2.9050 22 1 7.5502 7.7214 -3.1272 23 1 5.4060 8.1926 -4.1578 24 1 5.7785 8.7446 -1.8260 25 6 6.5589 2.4677 -1.7247 26 1 -0.3633 -0.0049 1.0277 27 1 -0.3633 0.8924 -0.5096 28 1 -0.3633 -0.8875 -0.5181 29 1 0.4210 -2.2762 0.3210 30 1 1.5486 -2.9824 -0.8653 31 1 1.6935 -4.2953 1.1781 32 1 1.9158 -2.8238 2.1563 33 1 5.2586 -2.2357 0.8941 34 1 3.9967 -1.6216 1.9905 35 1 4.9639 0.3228 -1.7916 36 1 5.5495 2.4206 0.2472 37 1 4.0521 2.8168 -2.4444 38 1 3.9877 3.8728 -0.9656 39 1 3.5684 6.6254 -2.2325 40 1 7.5179 2.5253 -1.2100 41 1 6.5917 1.8474 -2.6203 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001031407971.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:11:10 Heat of formation + Delta-G solvation = -32.314779 kcal Electronic energy + Delta-G solvation = -25171.656648 eV Core-core repulsion = 21475.791540 eV Total energy + Delta-G solvation = -3695.865108 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 3.04 seconds Orbital eigenvalues (eV) -40.99615 -38.81911 -38.37369 -37.20071 -34.94989 -33.33373 -32.27401 -31.52808 -30.01849 -27.88548 -27.28549 -25.03553 -24.67678 -23.07682 -22.35715 -20.78582 -19.62382 -18.94429 -17.50023 -17.03238 -16.72813 -16.59904 -16.06820 -15.68669 -15.36096 -15.14194 -14.84392 -14.64951 -14.02240 -13.79980 -13.65172 -13.54122 -13.34418 -12.58932 -12.43910 -12.35650 -12.12830 -11.81526 -11.67526 -11.35548 -11.29322 -11.27385 -10.82442 -10.70000 -10.53476 -10.32090 -9.94263 -9.53145 -9.44745 -9.22988 -8.80061 -8.72864 -8.20629 -6.82349 -5.68465 -3.02912 2.40367 2.62223 3.27131 3.37377 3.43814 3.48010 3.51483 3.69431 4.33874 4.44184 4.53304 4.65097 4.71368 4.82023 4.85261 5.00898 5.05293 5.11680 5.26035 5.29519 5.31518 5.40747 5.55625 5.56652 5.70027 5.76205 6.10134 6.15524 6.32227 6.54218 6.67692 6.70287 6.96221 7.16106 7.38470 7.52067 7.72336 8.02666 8.07522 8.13949 8.79682 9.11135 9.77172 10.65791 11.47741 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.029193 B = 0.003697 C = 0.003388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 958.919061 B = 7572.019856 C = 8262.666498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.498 3.502 3 O -0.482 6.482 4 N -0.614 5.614 5 C 0.076 3.924 6 C 0.044 3.956 7 O -0.375 6.375 8 C 0.063 3.937 9 C 0.092 3.908 10 H 0.092 0.908 11 C 0.534 3.466 12 O -0.526 6.526 13 N -0.711 5.711 14 C 0.102 3.898 15 C 0.162 3.838 16 N -0.609 5.609 17 C -0.225 4.225 18 H 0.081 0.919 19 C -0.007 4.007 20 N -0.916 5.916 21 Si 0.913 3.087 22 H -0.279 1.279 23 H -0.291 1.291 24 H -0.290 1.290 25 C 0.110 3.890 26 H 0.092 0.908 27 H 0.096 0.904 28 H 0.079 0.921 29 H 0.100 0.900 30 H 0.079 0.921 31 H 0.108 0.892 32 H 0.058 0.942 33 H 0.110 0.890 34 H 0.071 0.929 35 H 0.391 0.609 36 H 0.108 0.892 37 H 0.024 0.976 38 H 0.076 0.924 39 H 0.253 0.747 40 H 0.048 0.952 41 H 0.033 0.967 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.364 -22.813 4.391 24.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.286 3.714 3 O -0.353 6.353 4 N -0.354 5.354 5 C -0.047 4.047 6 C -0.034 4.034 7 O -0.293 6.293 8 C -0.015 4.015 9 C -0.016 4.016 10 H 0.110 0.890 11 C 0.318 3.682 12 O -0.402 6.402 13 N -0.362 5.362 14 C -0.003 4.003 15 C 0.036 3.964 16 N -0.336 5.336 17 C -0.352 4.352 18 H 0.099 0.901 19 C -0.204 4.204 20 N -0.562 5.562 21 Si 0.743 3.257 22 H -0.204 1.204 23 H -0.218 1.218 24 H -0.217 1.217 25 C -0.017 4.017 26 H 0.110 0.890 27 H 0.115 0.885 28 H 0.098 0.902 29 H 0.118 0.882 30 H 0.097 0.903 31 H 0.126 0.874 32 H 0.077 0.923 33 H 0.128 0.872 34 H 0.090 0.910 35 H 0.224 0.776 36 H 0.126 0.874 37 H 0.042 0.958 38 H 0.094 0.906 39 H 0.063 0.937 40 H 0.066 0.934 41 H 0.051 0.949 Dipole moment (debyes) X Y Z Total from point charges -7.088 -21.557 5.054 23.248 hybrid contribution -0.016 0.791 -0.943 1.231 sum -7.104 -20.766 4.110 22.329 Atomic orbital electron populations 1.21914 0.91329 1.04907 1.04639 1.21019 0.90858 0.83117 0.76367 1.90958 1.68274 1.30101 1.46013 1.48123 1.04852 1.06463 1.75946 1.22394 0.97499 0.84337 1.00510 1.22949 0.81922 1.01127 0.97381 1.87979 1.19745 1.28782 1.92808 1.22853 0.97574 0.83502 0.97599 1.21909 0.81876 0.96533 1.01259 0.88978 1.19454 0.77895 0.85968 0.84844 1.90683 1.56743 1.64294 1.28485 1.45941 1.57692 1.17518 1.15057 1.23747 0.95840 0.79755 1.00915 1.22562 0.89302 0.90127 0.94394 1.45732 1.04366 1.02922 1.80551 1.19021 0.93102 0.83342 1.39783 0.90103 1.24831 0.95444 0.98115 1.02014 1.69876 1.01347 1.30734 1.54264 0.86038 0.77741 0.84158 0.77759 1.20436 1.21772 1.21654 1.22902 0.95398 0.88270 0.95125 0.88969 0.88500 0.90227 0.88234 0.90307 0.87397 0.92335 0.87168 0.91040 0.77582 0.87413 0.95785 0.90602 0.93669 0.93418 0.94942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.54 9.32 36.01 0.34 -1.20 16 2 C 0.50 7.07 7.67 -10.98 -0.08 6.99 16 3 O -0.48 -9.77 12.88 -18.92 -0.24 -10.02 16 4 N -0.61 -7.06 3.03 -166.31 -0.50 -7.56 16 5 C 0.08 0.51 6.30 -3.74 -0.02 0.49 16 6 C 0.04 0.30 6.97 37.10 0.26 0.56 16 7 O -0.38 -3.66 10.74 -35.23 -0.38 -4.04 16 8 C 0.06 0.68 6.24 37.31 0.23 0.91 16 9 C 0.09 1.14 3.51 -68.57 -0.24 0.90 16 10 H 0.09 0.95 7.93 -51.93 -0.41 0.54 16 11 C 0.53 9.20 4.35 -10.98 -0.05 9.15 16 12 O -0.53 -11.38 14.31 -18.92 -0.27 -11.65 16 13 N -0.71 -12.25 5.36 -55.34 -0.30 -12.55 16 14 C 0.10 2.20 4.43 -70.14 -0.31 1.89 16 15 C 0.16 4.26 7.32 -2.97 -0.02 4.24 16 16 N -0.61 -16.61 3.70 -178.09 -0.66 -17.27 16 17 C -0.22 -6.61 10.70 -15.06 -0.16 -6.77 16 18 H 0.08 2.27 7.83 -52.49 -0.41 1.86 16 19 C -0.01 -0.21 5.50 -17.43 -0.10 -0.31 16 20 N -0.92 -28.76 11.38 55.49 0.63 -28.13 16 21 Si 0.91 22.95 29.55 -169.99 -5.02 17.92 16 22 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 23 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 24 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 25 C 0.11 2.35 8.69 -2.98 -0.03 2.32 16 26 H 0.09 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 28 H 0.08 0.46 6.50 -51.93 -0.34 0.12 16 29 H 0.10 0.43 5.85 -51.93 -0.30 0.12 16 30 H 0.08 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.11 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 34 H 0.07 0.89 7.82 -51.93 -0.41 0.49 16 35 H 0.39 5.54 8.58 -40.82 -0.35 5.19 16 36 H 0.11 2.53 7.46 -51.93 -0.39 2.15 16 37 H 0.02 0.65 8.14 -51.93 -0.42 0.22 16 38 H 0.08 2.30 7.15 -51.93 -0.37 1.92 16 39 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 40 H 0.05 0.96 8.14 -51.93 -0.42 0.54 16 41 H 0.03 0.64 8.12 -51.93 -0.42 0.22 16 LS Contribution 333.97 15.07 5.03 5.03 Total: -1.00 -39.26 333.97 -7.81 -47.07 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -5.92 Total: 2.02 kcal Atomic # 6 Polarization: 19.35 SS G_CDS: -0.18 Total: 19.17 kcal Atomic # 7 Polarization: -64.68 SS G_CDS: -0.83 Total: -65.51 kcal Atomic # 8 Polarization: -24.81 SS G_CDS: -0.89 Total: -25.71 kcal Atomic # 14 Polarization: 22.95 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -39.26 -7.81 -47.07 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001031407971.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.755 kcal (2) G-P(sol) polarization free energy of solvation -39.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.501 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.070 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.04 seconds