Wall clock time and date at job start Tue Mar 31 2020 03:48:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.51813 * 2 1 4 4 C 1.53278 * 109.51308 * 239.89495 * 2 1 3 5 5 N 1.47164 * 108.55790 * 186.99642 * 4 2 1 6 6 C 1.34781 * 121.07956 * 231.23705 * 5 4 2 7 7 O 1.21347 * 120.00125 * 181.92250 * 6 5 4 8 8 C 1.49448 * 119.99785 * 1.92785 * 6 5 4 9 9 N 1.34775 * 120.00054 * 173.77720 * 8 6 5 10 10 O 1.21347 * 120.00169 * 353.49214 * 8 6 5 11 11 C 1.47328 * 117.84533 * 51.50559 * 5 4 2 12 12 C 1.52774 * 108.21175 * 310.53627 * 11 5 4 13 13 C 1.54358 * 110.33776 * 173.64925 * 12 11 5 14 14 C 1.54463 * 102.87579 * 152.53383 * 13 12 11 15 15 N 1.47086 * 107.29385 * 338.50794 * 14 13 12 16 16 C 1.36941 * 125.63200 * 178.98938 * 15 14 13 17 17 H 1.07992 * 119.99864 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99802 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00093 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99783 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47337 * 60.00268 * 20 18 16 22 22 H 1.48500 * 109.47164 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47120 * 299.99924 * 20 18 16 24 24 C 1.47569 * 108.73699 * 359.00288 * 15 14 13 25 25 O 1.41886 * 111.38928 * 50.23506 * 12 11 5 26 26 H 1.08994 * 109.46920 * 180.10760 * 1 2 3 27 27 H 1.09002 * 109.46568 * 300.10186 * 1 2 3 28 28 H 1.08992 * 109.47079 * 60.10402 * 1 2 3 29 29 H 1.08999 * 109.62436 * 67.27205 * 4 2 1 30 30 H 1.09008 * 109.62385 * 306.71448 * 4 2 1 31 31 H 0.97000 * 120.00581 * 179.71873 * 9 8 6 32 32 H 0.97005 * 120.00150 * 359.71941 * 9 8 6 33 33 H 1.08999 * 109.64364 * 70.27882 * 11 5 4 34 34 H 1.08998 * 109.64495 * 190.91773 * 11 5 4 35 35 H 1.09001 * 110.73807 * 270.88197 * 13 12 11 36 36 H 1.09005 * 110.73363 * 34.19600 * 13 12 11 37 37 H 1.09001 * 109.87953 * 97.92537 * 14 13 12 38 38 H 1.09000 * 109.88084 * 218.93477 * 14 13 12 39 39 H 0.97005 * 119.99822 * 180.02562 * 19 18 16 40 40 H 1.09004 * 110.37820 * 264.49322 * 24 15 14 41 41 H 1.08998 * 110.37393 * 142.14806 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2499 5 7 3.5036 -0.8611 -1.1464 6 6 4.3117 -0.4723 -2.1526 7 8 5.5119 -0.6259 -2.0609 8 6 3.7295 0.1480 -3.3813 9 7 4.5418 0.6507 -4.3321 10 8 2.5255 0.1945 -3.5254 11 6 4.0547 -1.4421 0.0903 12 6 3.4227 -0.7208 1.2795 13 6 3.8445 -1.3957 2.6021 14 6 3.7655 -0.2369 3.6204 15 7 3.8530 1.0195 2.8606 16 6 3.8007 2.2797 3.3940 17 1 3.8738 3.1426 2.7487 18 6 3.6539 2.4479 4.7640 19 7 3.5654 1.3962 5.5504 20 14 3.5818 4.1668 5.4915 21 1 2.4271 4.9007 4.9142 22 1 3.4235 4.0745 6.9651 23 1 4.8382 4.8919 5.1737 24 6 4.0062 0.6978 1.4285 25 8 2.0091 -0.6770 1.1665 26 1 -0.3633 -1.0276 0.0019 27 1 -0.3632 0.5154 0.8891 28 1 -0.3633 0.5122 -0.8908 29 1 1.7904 -0.1450 -2.1380 30 1 1.5857 -1.7126 -1.3129 31 1 4.1640 1.0496 -5.1315 32 1 5.5043 0.6135 -4.2170 33 1 3.8164 -2.5048 0.1338 34 1 5.1359 -1.3048 0.1095 35 1 3.1488 -2.1914 2.8684 36 1 4.8625 -1.7791 2.5323 37 1 2.8182 -0.2796 4.1578 38 1 4.5946 -0.3052 4.3247 39 1 3.4624 1.5138 6.5078 40 1 5.0595 0.7063 1.1481 41 1 3.4445 1.4052 0.8185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071206060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:50 Heat of formation + Delta-G solvation = -56.823639 kcal Electronic energy + Delta-G solvation = -25829.784119 eV Core-core repulsion = 22132.856227 eV Total energy + Delta-G solvation = -3696.927892 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.14232 -39.57646 -38.27662 -36.36432 -34.97940 -33.74383 -33.06566 -31.26234 -29.47996 -28.52913 -26.52980 -26.23951 -24.60449 -23.14800 -21.78026 -20.40971 -20.07539 -19.11387 -18.07377 -17.47865 -16.96520 -16.50239 -16.35786 -15.91906 -15.55258 -14.74599 -14.53783 -14.39195 -14.10955 -13.97034 -13.66626 -13.41518 -12.93571 -12.73259 -12.21175 -12.08903 -12.01623 -11.78769 -11.47998 -11.16194 -10.97237 -10.83821 -10.82056 -10.47100 -10.22449 -10.21166 -10.13851 -10.08493 -9.65575 -9.54483 -9.22200 -8.55093 -8.40690 -6.78159 -5.67022 -2.99871 1.21551 2.25068 3.02270 3.43015 3.46149 3.46942 3.48369 3.96960 4.22003 4.51506 4.82235 5.00100 5.15037 5.19864 5.30847 5.51952 5.55267 5.59596 5.68146 5.69007 5.78056 5.87748 5.90311 6.07145 6.17992 6.20673 6.32256 6.39642 6.46901 6.49517 6.60285 6.63106 6.68818 7.11374 7.56887 7.57130 7.66699 7.75439 7.80599 7.87202 8.29637 9.25713 9.85497 10.51655 11.44754 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.004689 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.490054 B = 5970.085830 C = 6117.060937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.072 3.928 3 H 0.066 0.934 4 C 0.026 3.974 5 N -0.574 5.574 6 C 0.504 3.496 7 O -0.523 6.523 8 C 0.520 3.480 9 N -0.819 5.819 10 O -0.513 6.513 11 C 0.093 3.907 12 C 0.093 3.907 13 C -0.129 4.129 14 C 0.183 3.817 15 N -0.598 5.598 16 C -0.227 4.227 17 H 0.075 0.925 18 C -0.006 4.006 19 N -0.921 5.921 20 Si 0.912 3.088 21 H -0.286 1.286 22 H -0.290 1.290 23 H -0.286 1.286 24 C 0.120 3.880 25 O -0.349 6.349 26 H 0.061 0.939 27 H 0.069 0.931 28 H 0.070 0.930 29 H 0.157 0.843 30 H 0.074 0.926 31 H 0.411 0.589 32 H 0.415 0.585 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.073 0.927 36 H 0.073 0.927 37 H 0.050 0.950 38 H 0.044 0.956 39 H 0.252 0.748 40 H 0.024 0.976 41 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.193 -5.718 -17.833 18.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.013 3.987 3 H 0.084 0.916 4 C -0.095 4.095 5 N -0.307 5.307 6 C 0.286 3.714 7 O -0.400 6.400 8 C 0.300 3.700 9 N -0.384 5.384 10 O -0.390 6.390 11 C -0.030 4.030 12 C 0.051 3.949 13 C -0.168 4.168 14 C 0.058 3.942 15 N -0.324 5.324 16 C -0.356 4.356 17 H 0.092 0.908 18 C -0.203 4.203 19 N -0.568 5.568 20 Si 0.742 3.258 21 H -0.212 1.212 22 H -0.216 1.216 23 H -0.212 1.212 24 C -0.007 4.007 25 O -0.267 6.267 26 H 0.080 0.920 27 H 0.088 0.912 28 H 0.089 0.911 29 H 0.173 0.827 30 H 0.093 0.907 31 H 0.243 0.757 32 H 0.246 0.754 33 H 0.097 0.903 34 H 0.122 0.878 35 H 0.092 0.908 36 H 0.091 0.909 37 H 0.069 0.931 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.042 0.958 41 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -1.470 -5.841 -17.331 18.348 hybrid contribution 0.421 1.128 0.018 1.204 sum -1.050 -4.714 -17.314 17.975 Atomic orbital electron populations 1.21651 0.92422 1.02741 1.02762 1.22470 0.95435 0.96157 0.84625 0.91642 1.23966 0.77967 1.03815 1.03794 1.48092 1.08071 1.58813 1.15689 1.19856 0.86676 0.80446 0.84417 1.90764 1.14051 1.55211 1.79998 1.20248 0.86608 0.78383 0.84748 1.43545 1.11797 1.61070 1.22031 1.90401 1.14226 1.57220 1.77156 1.22477 1.00769 0.97551 0.82165 1.22395 0.81612 0.96924 0.93955 1.22852 1.00136 1.00033 0.93797 1.21157 1.01257 0.81241 0.90529 1.44389 1.86006 1.02526 0.99456 1.18967 1.43325 0.82516 0.90762 0.90761 1.24769 1.02160 0.97350 0.95973 1.69948 1.56334 1.27042 1.03496 0.86207 0.77838 0.83649 0.78102 1.21231 1.21552 1.21240 1.21929 0.96984 0.93036 0.88729 1.87836 1.19686 1.76607 1.42616 0.91954 0.91172 0.91108 0.82651 0.90739 0.75678 0.75400 0.90254 0.87777 0.90790 0.90857 0.93147 0.93767 0.93722 0.95809 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.80 9.57 37.16 0.36 -1.45 16 2 C 0.07 1.13 3.20 -26.59 -0.09 1.04 16 3 H 0.07 1.15 6.26 -51.93 -0.32 0.82 16 4 C 0.03 0.35 5.67 -3.54 -0.02 0.33 16 5 N -0.57 -8.39 2.95 -172.96 -0.51 -8.90 16 6 C 0.50 7.09 7.78 -11.58 -0.09 7.00 16 7 O -0.52 -8.19 15.99 5.50 0.09 -8.10 16 8 C 0.52 6.03 8.08 -11.59 -0.09 5.94 16 9 N -0.82 -6.15 8.86 30.90 0.27 -5.88 16 10 O -0.51 -6.66 13.89 5.50 0.08 -6.58 16 11 C 0.09 1.43 5.33 -3.71 -0.02 1.41 16 12 C 0.09 1.72 0.83 -89.44 -0.07 1.64 16 13 C -0.13 -2.47 6.12 -25.25 -0.15 -2.62 16 14 C 0.18 4.55 5.38 -2.95 -0.02 4.53 16 15 N -0.60 -15.75 3.40 -170.32 -0.58 -16.33 16 16 C -0.23 -6.51 10.28 -15.06 -0.15 -6.67 16 17 H 0.07 2.06 7.83 -52.49 -0.41 1.65 16 18 C -0.01 -0.18 5.49 -17.43 -0.10 -0.28 16 19 N -0.92 -27.43 10.31 55.49 0.57 -26.86 16 20 Si 0.91 22.50 29.55 -169.99 -5.02 17.48 16 21 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 22 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 23 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 24 C 0.12 2.62 6.19 -2.88 -0.02 2.60 16 25 O -0.35 -6.58 9.92 -35.22 -0.35 -6.93 16 26 H 0.06 0.75 8.14 -51.93 -0.42 0.32 16 27 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.16 2.07 3.93 -56.42 -0.22 1.85 16 30 H 0.07 0.94 8.14 -51.92 -0.42 0.52 16 31 H 0.41 2.07 8.93 -40.82 -0.36 1.70 16 32 H 0.42 2.67 8.32 -40.82 -0.34 2.33 16 33 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 34 H 0.10 1.65 6.88 -51.93 -0.36 1.29 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.07 1.24 8.00 -51.93 -0.42 0.83 16 37 H 0.05 1.40 7.39 -51.93 -0.38 1.02 16 38 H 0.04 1.19 7.50 -51.93 -0.39 0.81 16 39 H 0.25 7.31 8.31 -40.82 -0.34 6.98 16 40 H 0.02 0.53 7.83 -51.93 -0.41 0.13 16 41 H 0.04 0.85 6.10 -51.93 -0.32 0.54 16 LS Contribution 326.23 15.07 4.92 4.92 Total: -1.00 -33.72 326.23 -6.60 -40.33 By element: Atomic # 1 Polarization: 8.98 SS G_CDS: -5.60 Total: 3.38 kcal Atomic # 6 Polarization: 13.95 SS G_CDS: -0.47 Total: 13.49 kcal Atomic # 7 Polarization: -57.72 SS G_CDS: -0.24 Total: -57.97 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.19 Total: -21.61 kcal Atomic # 14 Polarization: 22.50 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -33.72 -6.60 -40.33 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071206060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.496 kcal (2) G-P(sol) polarization free energy of solvation -33.724 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds