Wall clock time and date at job start Tue Mar 31 2020 03:48:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.51813 * 2 1 4 4 C 1.53278 * 109.51308 * 239.89495 * 2 1 3 5 5 N 1.47164 * 108.55790 * 186.99642 * 4 2 1 6 6 C 1.34781 * 121.07956 * 231.23705 * 5 4 2 7 7 O 1.21347 * 120.00125 * 181.92250 * 6 5 4 8 8 C 1.49448 * 119.99785 * 1.92785 * 6 5 4 9 9 N 1.34775 * 120.00054 * 173.77720 * 8 6 5 10 10 O 1.21347 * 120.00169 * 353.49214 * 8 6 5 11 11 C 1.47328 * 117.84533 * 51.50559 * 5 4 2 12 12 C 1.52774 * 108.21175 * 310.53627 * 11 5 4 13 13 C 1.54358 * 110.33776 * 173.64925 * 12 11 5 14 14 C 1.54463 * 102.87579 * 152.53383 * 13 12 11 15 15 N 1.47086 * 107.29385 * 338.50794 * 14 13 12 16 16 C 1.36941 * 125.63200 * 178.98938 * 15 14 13 17 17 H 1.07992 * 119.99864 * 180.02562 * 16 15 14 18 18 C 1.38812 * 119.99802 * 0.02562 * 16 15 14 19 19 N 1.31619 * 120.00093 * 0.02562 * 18 16 15 20 20 Si 1.86796 * 119.99783 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47337 * 60.00268 * 20 18 16 22 22 H 1.48500 * 109.47164 * 180.02562 * 20 18 16 23 23 H 1.48498 * 109.47120 * 299.99924 * 20 18 16 24 24 C 1.47569 * 108.73699 * 359.00288 * 15 14 13 25 25 O 1.41886 * 111.38928 * 50.23506 * 12 11 5 26 26 H 1.08994 * 109.46920 * 180.10760 * 1 2 3 27 27 H 1.09002 * 109.46568 * 300.10186 * 1 2 3 28 28 H 1.08992 * 109.47079 * 60.10402 * 1 2 3 29 29 H 1.08999 * 109.62436 * 67.27205 * 4 2 1 30 30 H 1.09008 * 109.62385 * 306.71448 * 4 2 1 31 31 H 0.97000 * 120.00581 * 179.71873 * 9 8 6 32 32 H 0.97005 * 120.00150 * 359.71941 * 9 8 6 33 33 H 1.08999 * 109.64364 * 70.27882 * 11 5 4 34 34 H 1.08998 * 109.64495 * 190.91773 * 11 5 4 35 35 H 1.09001 * 110.73807 * 270.88197 * 13 12 11 36 36 H 1.09005 * 110.73363 * 34.19600 * 13 12 11 37 37 H 1.09001 * 109.87953 * 97.92537 * 14 13 12 38 38 H 1.09000 * 109.88084 * 218.93477 * 14 13 12 39 39 H 0.97005 * 119.99822 * 180.02562 * 19 18 16 40 40 H 1.09004 * 110.37820 * 264.49322 * 24 15 14 41 41 H 1.08998 * 110.37393 * 142.14806 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8942 1.0273 0.0000 4 6 2.0420 -0.7247 -1.2499 5 7 3.5036 -0.8611 -1.1464 6 6 4.3117 -0.4723 -2.1526 7 8 5.5119 -0.6259 -2.0609 8 6 3.7295 0.1480 -3.3813 9 7 4.5418 0.6507 -4.3321 10 8 2.5255 0.1945 -3.5254 11 6 4.0547 -1.4421 0.0903 12 6 3.4227 -0.7208 1.2795 13 6 3.8445 -1.3957 2.6021 14 6 3.7655 -0.2369 3.6204 15 7 3.8530 1.0195 2.8606 16 6 3.8007 2.2797 3.3940 17 1 3.8738 3.1426 2.7487 18 6 3.6539 2.4479 4.7640 19 7 3.5654 1.3962 5.5504 20 14 3.5818 4.1668 5.4915 21 1 2.4271 4.9007 4.9142 22 1 3.4235 4.0745 6.9651 23 1 4.8382 4.8919 5.1737 24 6 4.0062 0.6978 1.4285 25 8 2.0091 -0.6770 1.1665 26 1 -0.3633 -1.0276 0.0019 27 1 -0.3632 0.5154 0.8891 28 1 -0.3633 0.5122 -0.8908 29 1 1.7904 -0.1450 -2.1380 30 1 1.5857 -1.7126 -1.3129 31 1 4.1640 1.0496 -5.1315 32 1 5.5043 0.6135 -4.2170 33 1 3.8164 -2.5048 0.1338 34 1 5.1359 -1.3048 0.1095 35 1 3.1488 -2.1914 2.8684 36 1 4.8625 -1.7791 2.5323 37 1 2.8182 -0.2796 4.1578 38 1 4.5946 -0.3052 4.3247 39 1 3.4624 1.5138 6.5078 40 1 5.0595 0.7063 1.1481 41 1 3.4445 1.4052 0.8185 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071206060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:49 Heat of formation + Delta-G solvation = -84.230777 kcal Electronic energy + Delta-G solvation = -25830.972581 eV Core-core repulsion = 22132.856227 eV Total energy + Delta-G solvation = -3698.116355 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.25824 -40.84027 -39.37240 -37.98269 -36.15757 -34.85870 -34.58543 -32.94736 -31.15066 -30.09737 -27.91281 -27.58967 -26.28010 -24.44562 -23.20797 -21.98122 -21.35009 -20.50575 -19.17109 -18.84809 -18.47588 -17.75148 -17.52566 -17.05038 -16.77648 -16.52496 -16.07523 -15.65427 -15.44865 -15.29477 -15.11396 -14.98326 -14.19779 -14.01038 -13.93082 -13.57641 -13.39783 -13.15638 -12.99092 -12.80335 -12.70374 -12.30571 -12.21562 -12.09279 -12.01657 -11.97233 -11.72054 -11.63845 -10.99011 -10.96382 -10.70551 -10.27093 -9.66691 -8.91754 -7.86599 -5.22392 0.23101 1.25218 1.42886 1.46688 1.53129 2.02487 2.46821 2.48573 2.65202 3.30642 3.36054 3.46939 3.60229 3.75495 3.88237 3.97385 4.06134 4.24833 4.34708 4.49170 4.56727 4.58836 4.65547 4.72697 4.80188 4.90193 4.93996 4.97531 5.08718 5.09942 5.28164 5.38811 5.63336 5.68656 5.74780 5.84106 6.07715 6.16537 6.36583 6.59573 6.95837 7.07723 7.73410 8.38381 9.23520 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.018883 B = 0.004689 C = 0.004576 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1482.490054 B = 5970.085830 C = 6117.060937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.065 3.935 3 H 0.040 0.960 4 C 0.037 3.963 5 N -0.581 5.581 6 C 0.500 3.500 7 O -0.542 6.542 8 C 0.522 3.478 9 N -0.794 5.794 10 O -0.528 6.528 11 C 0.101 3.899 12 C 0.103 3.897 13 C -0.117 4.117 14 C 0.190 3.810 15 N -0.619 5.619 16 C -0.248 4.248 17 H 0.075 0.925 18 C -0.061 4.061 19 N -0.948 5.948 20 Si 0.979 3.021 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.277 1.277 24 C 0.119 3.881 25 O -0.369 6.369 26 H 0.076 0.924 27 H 0.050 0.950 28 H 0.097 0.903 29 H 0.165 0.835 30 H 0.092 0.908 31 H 0.426 0.574 32 H 0.423 0.577 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.092 0.908 36 H 0.099 0.901 37 H 0.010 0.990 38 H 0.013 0.987 39 H 0.248 0.752 40 H 0.024 0.976 41 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.352 -6.069 -20.112 21.051 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.007 3.993 3 H 0.058 0.942 4 C -0.084 4.084 5 N -0.313 5.313 6 C 0.283 3.717 7 O -0.420 6.420 8 C 0.301 3.699 9 N -0.360 5.360 10 O -0.407 6.407 11 C -0.022 4.022 12 C 0.062 3.938 13 C -0.155 4.155 14 C 0.065 3.935 15 N -0.345 5.345 16 C -0.377 4.377 17 H 0.093 0.907 18 C -0.254 4.254 19 N -0.596 5.596 20 Si 0.807 3.193 21 H -0.204 1.204 22 H -0.216 1.216 23 H -0.203 1.203 24 C -0.006 4.006 25 O -0.289 6.289 26 H 0.095 0.905 27 H 0.069 0.931 28 H 0.115 0.885 29 H 0.181 0.819 30 H 0.110 0.890 31 H 0.262 0.738 32 H 0.255 0.745 33 H 0.124 0.876 34 H 0.119 0.881 35 H 0.110 0.890 36 H 0.117 0.883 37 H 0.028 0.972 38 H 0.031 0.969 39 H 0.057 0.943 40 H 0.041 0.959 41 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges -1.610 -6.180 -19.681 20.691 hybrid contribution 0.499 1.288 0.675 1.537 sum -1.112 -4.892 -19.006 19.657 Atomic orbital electron populations 1.21660 0.90437 1.03810 1.03097 1.22678 0.97027 0.94857 0.84707 0.94225 1.23959 0.77373 1.04554 1.02511 1.48173 1.08572 1.58979 1.15591 1.20326 0.86425 0.79885 0.85065 1.90753 1.14832 1.55814 1.80583 1.19832 0.86593 0.78890 0.84581 1.43389 1.11936 1.59249 1.21421 1.90382 1.14675 1.58309 1.77318 1.22304 1.00194 0.98417 0.81237 1.22225 0.81855 0.94621 0.95129 1.22741 1.02354 0.98069 0.92335 1.20892 0.97765 0.83242 0.91554 1.44676 1.85886 1.02333 1.01600 1.19335 1.43207 0.83812 0.91329 0.90725 1.25632 1.02174 1.01292 0.96330 1.70178 1.57131 1.29009 1.03277 0.85155 0.78166 0.79089 0.76921 1.20422 1.21611 1.20261 1.22049 0.96940 0.95427 0.86225 1.87815 1.19644 1.76895 1.44521 0.90480 0.93118 0.88483 0.81881 0.88996 0.73830 0.74473 0.87640 0.88065 0.88976 0.88263 0.97168 0.96929 0.94273 0.95873 0.95083 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.27 9.57 71.98 0.69 -2.58 16 2 C 0.07 1.99 3.20 30.69 0.10 2.09 16 3 H 0.04 1.40 6.26 -2.39 -0.01 1.39 16 4 C 0.04 0.92 5.67 86.35 0.49 1.40 16 5 N -0.58 -15.80 2.95 -819.47 -2.42 -18.22 16 6 C 0.50 13.08 7.78 87.27 0.68 13.76 16 7 O -0.54 -15.99 15.99 -3.24 -0.05 -16.04 16 8 C 0.52 10.86 8.08 87.27 0.71 11.57 16 9 N -0.79 -9.77 8.86 -174.50 -1.55 -11.31 16 10 O -0.53 -12.38 13.89 -3.24 -0.04 -12.43 16 11 C 0.10 2.91 5.33 86.15 0.46 3.36 16 12 C 0.10 3.74 0.83 -10.03 -0.01 3.73 16 13 C -0.12 -4.38 6.12 31.55 0.19 -4.18 16 14 C 0.19 9.82 5.38 86.76 0.47 10.29 16 15 N -0.62 -33.63 3.40 -692.76 -2.36 -35.98 16 16 C -0.25 -14.61 10.28 84.03 0.86 -13.75 16 17 H 0.07 4.25 7.83 -2.91 -0.02 4.23 16 18 C -0.06 -3.59 5.49 84.86 0.47 -3.12 16 19 N -0.95 -58.51 10.31 21.65 0.22 -58.29 16 20 Si 0.98 47.07 29.55 68.60 2.03 49.10 16 21 H -0.28 -12.94 7.11 99.48 0.71 -12.23 16 22 H -0.29 -13.87 7.11 99.48 0.71 -13.16 16 23 H -0.28 -12.80 7.11 99.48 0.71 -12.09 16 24 C 0.12 5.28 6.19 86.55 0.54 5.82 16 25 O -0.37 -13.72 9.92 -148.95 -1.48 -15.20 16 26 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 27 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 28 H 0.10 1.86 8.14 -2.39 -0.02 1.84 16 29 H 0.17 3.96 3.93 -73.52 -0.29 3.67 16 30 H 0.09 2.01 8.14 -2.38 -0.02 1.99 16 31 H 0.43 2.99 8.93 -92.71 -0.83 2.17 16 32 H 0.42 4.33 8.32 -92.70 -0.77 3.56 16 33 H 0.11 2.54 8.14 -2.39 -0.02 2.52 16 34 H 0.10 3.00 6.88 -2.39 -0.02 2.99 16 35 H 0.09 3.13 8.14 -2.39 -0.02 3.11 16 36 H 0.10 3.20 8.00 -2.38 -0.02 3.18 16 37 H 0.01 0.59 7.39 -2.39 -0.02 0.57 16 38 H 0.01 0.71 7.50 -2.39 -0.02 0.69 16 39 H 0.25 14.85 8.31 -92.70 -0.77 14.08 16 40 H 0.02 1.04 7.83 -2.38 -0.02 1.02 16 41 H 0.03 1.41 6.10 -2.39 -0.01 1.40 16 Total: -1.00 -75.18 326.23 -0.80 -75.98 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -0.80 Total: 13.98 kcal Atomic # 6 Polarization: 22.77 SS G_CDS: 5.64 Total: 28.40 kcal Atomic # 7 Polarization: -117.70 SS G_CDS: -6.10 Total: -123.80 kcal Atomic # 8 Polarization: -42.09 SS G_CDS: -1.57 Total: -43.66 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 2.03 Total: 49.10 kcal Total: -75.18 -0.80 -75.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071206060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.250 kcal (2) G-P(sol) polarization free energy of solvation -75.176 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.426 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.231 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds