Wall clock time and date at job start Tue Mar 31 2020 03:48:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.51369 * 2 1 4 4 C 1.53273 * 109.51275 * 120.10380 * 2 1 3 5 5 N 1.47173 * 108.55269 * 172.81690 * 4 2 1 6 6 C 1.34773 * 121.07033 * 128.89191 * 5 4 2 7 7 O 1.21347 * 120.00055 * 178.08810 * 6 5 4 8 8 C 1.49447 * 119.99869 * 358.08651 * 6 5 4 9 9 N 1.34776 * 120.00244 * 186.50662 * 8 6 5 10 10 O 1.21353 * 120.00377 * 6.50220 * 8 6 5 11 11 C 1.47307 * 117.86168 * 308.86570 * 5 4 2 12 12 C 1.52526 * 108.39653 * 49.40401 * 11 5 4 13 13 C 1.54772 * 110.09086 * 186.97143 * 12 11 5 14 14 C 1.55018 * 101.40598 * 206.98131 * 13 12 11 15 15 N 1.47478 * 104.99906 * 36.35832 * 14 13 12 16 16 C 1.36936 * 125.66396 * 155.95514 * 15 14 13 17 17 H 1.08002 * 119.99921 * 179.97438 * 16 15 14 18 18 C 1.38805 * 120.00089 * 359.97438 * 16 15 14 19 19 N 1.31614 * 120.00132 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47055 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47027 * 119.99577 * 20 18 16 23 23 H 1.48495 * 109.47564 * 239.99671 * 20 18 16 24 24 C 1.47182 * 108.67390 * 335.93174 * 15 14 13 25 25 O 1.42070 * 111.11099 * 309.55985 * 12 11 5 26 26 H 1.09008 * 109.46557 * 299.89681 * 1 2 3 27 27 H 1.09003 * 109.47408 * 59.89620 * 1 2 3 28 28 H 1.08992 * 109.47186 * 179.90241 * 1 2 3 29 29 H 1.08994 * 109.62371 * 53.09706 * 4 2 1 30 30 H 1.08999 * 109.62400 * 292.53078 * 4 2 1 31 31 H 0.97001 * 119.99767 * 359.97438 * 9 8 6 32 32 H 0.97000 * 120.00403 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.68242 * 289.67407 * 11 5 4 34 34 H 1.08999 * 109.71043 * 169.14309 * 11 5 4 35 35 H 1.08999 * 111.12131 * 88.93695 * 13 12 11 36 36 H 1.09006 * 111.02031 * 324.97795 * 13 12 11 37 37 H 1.08996 * 110.35529 * 277.44411 * 14 13 12 38 38 H 1.09006 * 110.35111 * 155.26691 * 14 13 12 39 39 H 0.97006 * 120.00344 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.90731 * 120.88212 * 24 15 14 41 41 H 1.08995 * 109.91221 * 241.95864 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 1.2498 5 7 3.5032 -0.8650 1.1442 6 6 4.3135 -0.4796 2.1497 7 8 5.5132 -0.6361 2.0562 8 6 3.7345 0.1407 3.3800 9 7 4.5492 0.6452 4.3277 10 8 2.5308 0.1901 3.5257 11 6 4.0515 -1.4409 -0.0958 12 6 3.4233 -0.7165 -1.2820 13 6 3.8371 -1.4046 -2.6051 14 6 3.7447 -0.2247 -3.6062 15 7 4.2032 0.9550 -2.8492 16 6 4.7298 2.0966 -3.3919 17 1 5.0369 2.9083 -2.7490 18 6 4.8690 2.2107 -4.7682 19 7 4.4953 1.2214 -5.5517 20 14 5.5868 3.7683 -5.5086 21 1 5.9260 4.7220 -4.4220 22 1 6.8148 3.4327 -6.2731 23 1 4.5908 4.3883 -6.4190 24 6 4.0002 0.7018 -1.4136 25 8 2.0079 -0.6774 -1.1664 26 1 -0.3633 0.5123 0.8910 27 1 -0.3634 0.5154 -0.8891 28 1 -0.3633 -1.0276 -0.0018 29 1 1.5832 -1.7112 1.3147 30 1 1.7934 -0.1432 2.1377 31 1 5.5114 0.6054 4.2114 32 1 4.1734 1.0474 5.1264 33 1 3.8111 -2.5029 -0.1450 34 1 5.1332 -1.3082 -0.1158 35 1 3.1385 -2.1981 -2.8704 36 1 4.8561 -1.7872 -2.5448 37 1 2.7149 -0.0870 -3.9359 38 1 4.3955 -0.4022 -4.4625 39 1 4.5922 1.3012 -6.5136 40 1 4.9526 0.7655 -0.8872 41 1 3.3003 1.4298 -1.0036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001071206061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:54 Heat of formation + Delta-G solvation = -56.294828 kcal Electronic energy + Delta-G solvation = -25768.080431 eV Core-core repulsion = 22071.175470 eV Total energy + Delta-G solvation = -3696.904961 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.15566 -39.60280 -38.27605 -36.37666 -35.01715 -33.74722 -33.10072 -31.29323 -29.46300 -28.53693 -26.56164 -26.24390 -24.63448 -23.14279 -21.77890 -20.45841 -20.17720 -19.02165 -18.06950 -17.48144 -16.99443 -16.50660 -16.43114 -15.92816 -15.57931 -14.78828 -14.58013 -14.45286 -14.10730 -13.92482 -13.64500 -13.36626 -12.97339 -12.70514 -12.32388 -12.22617 -12.00137 -11.63392 -11.50440 -11.17509 -11.01586 -10.88679 -10.86290 -10.51056 -10.40072 -10.22435 -10.07314 -9.93125 -9.62161 -9.57315 -9.22084 -8.63616 -8.43035 -6.81693 -5.63639 -3.05199 1.21648 2.24834 3.02499 3.40818 3.45451 3.46220 3.48743 3.92346 4.21699 4.48670 4.79899 4.98667 5.15411 5.16213 5.28725 5.48648 5.53600 5.56221 5.63624 5.68542 5.76394 5.87190 5.88755 6.06366 6.13102 6.25873 6.25883 6.39311 6.49054 6.53188 6.60287 6.64741 6.70238 7.11077 7.56922 7.58330 7.63829 7.68247 7.80457 7.86801 8.36839 9.23399 9.83515 10.48710 11.40299 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.004765 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.342627 B = 5874.967836 C = 6415.939528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.069 3.931 3 H 0.066 0.934 4 C 0.027 3.973 5 N -0.575 5.575 6 C 0.504 3.496 7 O -0.522 6.522 8 C 0.520 3.480 9 N -0.819 5.819 10 O -0.514 6.514 11 C 0.094 3.906 12 C 0.095 3.905 13 C -0.129 4.129 14 C 0.157 3.843 15 N -0.599 5.599 16 C -0.221 4.221 17 H 0.076 0.924 18 C -0.010 4.010 19 N -0.921 5.921 20 Si 0.914 3.086 21 H -0.281 1.281 22 H -0.290 1.290 23 H -0.290 1.290 24 C 0.121 3.879 25 O -0.355 6.355 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.062 0.938 29 H 0.075 0.925 30 H 0.157 0.843 31 H 0.415 0.585 32 H 0.411 0.589 33 H 0.080 0.920 34 H 0.105 0.895 35 H 0.072 0.928 36 H 0.076 0.924 37 H 0.018 0.982 38 H 0.108 0.892 39 H 0.252 0.748 40 H 0.028 0.972 41 H 0.025 0.975 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.771 -5.198 17.579 18.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C 0.010 3.990 3 H 0.084 0.916 4 C -0.094 4.094 5 N -0.308 5.308 6 C 0.286 3.714 7 O -0.398 6.398 8 C 0.301 3.699 9 N -0.384 5.384 10 O -0.391 6.391 11 C -0.029 4.029 12 C 0.054 3.946 13 C -0.168 4.168 14 C 0.032 3.968 15 N -0.326 5.326 16 C -0.350 4.350 17 H 0.094 0.906 18 C -0.206 4.206 19 N -0.569 5.569 20 Si 0.745 3.255 21 H -0.206 1.206 22 H -0.217 1.217 23 H -0.217 1.217 24 C -0.006 4.006 25 O -0.274 6.274 26 H 0.090 0.910 27 H 0.087 0.913 28 H 0.081 0.919 29 H 0.093 0.907 30 H 0.174 0.826 31 H 0.246 0.754 32 H 0.243 0.757 33 H 0.098 0.902 34 H 0.123 0.877 35 H 0.091 0.909 36 H 0.095 0.905 37 H 0.036 0.964 38 H 0.126 0.874 39 H 0.062 0.938 40 H 0.046 0.954 41 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -3.967 -5.320 17.114 18.356 hybrid contribution 0.732 1.068 0.067 1.296 sum -3.235 -4.253 17.182 17.993 Atomic orbital electron populations 1.21660 0.92383 1.02831 1.02713 1.22494 0.95433 0.96227 0.84802 0.91601 1.23940 0.78065 1.03800 1.03644 1.48087 1.08014 1.59055 1.15601 1.19859 0.86677 0.80445 0.84449 1.90773 1.14087 1.54969 1.79991 1.20251 0.86585 0.78376 0.84736 1.43545 1.11804 1.60824 1.22233 1.90397 1.14255 1.57333 1.77117 1.22452 1.00912 0.97575 0.81922 1.22341 0.81057 0.96540 0.94627 1.23051 1.00261 0.99888 0.93597 1.21948 0.98898 0.82096 0.93859 1.44488 1.73080 1.16081 0.98909 1.19102 1.33054 0.92445 0.90375 0.90607 1.24768 1.01635 0.98307 0.95842 1.69798 1.53268 1.30699 1.03174 0.86000 0.78351 0.82174 0.78985 1.20603 1.21692 1.21733 1.21728 0.97002 0.93012 0.88836 1.87867 1.20100 1.76746 1.42715 0.91031 0.91306 0.91858 0.90714 0.82637 0.75371 0.75676 0.90226 0.87683 0.90906 0.90540 0.96406 0.87424 0.93756 0.95431 0.95776 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 9.57 37.16 0.36 -1.34 16 2 C 0.07 1.05 3.17 -26.59 -0.08 0.96 16 3 H 0.07 1.11 6.23 -51.93 -0.32 0.79 16 4 C 0.03 0.36 5.68 -3.53 -0.02 0.34 16 5 N -0.57 -8.49 2.94 -173.13 -0.51 -9.00 16 6 C 0.50 7.22 7.78 -11.59 -0.09 7.13 16 7 O -0.52 -8.39 15.99 5.50 0.09 -8.30 16 8 C 0.52 6.08 8.08 -11.59 -0.09 5.99 16 9 N -0.82 -6.25 8.87 30.90 0.27 -5.98 16 10 O -0.51 -6.65 13.89 5.49 0.08 -6.57 16 11 C 0.09 1.48 5.20 -3.84 -0.02 1.46 16 12 C 0.10 1.77 0.81 -89.58 -0.07 1.70 16 13 C -0.13 -2.51 6.24 -24.73 -0.15 -2.66 16 14 C 0.16 3.91 5.88 -2.44 -0.01 3.89 16 15 N -0.60 -15.86 3.40 -170.24 -0.58 -16.44 16 16 C -0.22 -6.33 10.28 -15.06 -0.15 -6.49 16 17 H 0.08 2.11 7.83 -52.49 -0.41 1.70 16 18 C -0.01 -0.29 5.49 -17.44 -0.10 -0.38 16 19 N -0.92 -27.09 10.09 55.49 0.56 -26.53 16 20 Si 0.91 22.38 29.55 -169.99 -5.02 17.36 16 21 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 22 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 23 H -0.29 -7.14 7.11 56.52 0.40 -6.74 16 24 C 0.12 2.68 6.32 -3.32 -0.02 2.66 16 25 O -0.36 -6.52 9.91 -35.23 -0.35 -6.87 16 26 H 0.07 0.72 8.14 -51.92 -0.42 0.29 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.16 2.05 3.93 -56.41 -0.22 1.82 16 31 H 0.42 2.76 8.32 -40.82 -0.34 2.42 16 32 H 0.41 2.10 8.93 -40.82 -0.36 1.73 16 33 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 34 H 0.10 1.75 6.85 -51.93 -0.36 1.40 16 35 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16 36 H 0.08 1.39 8.01 -51.93 -0.42 0.97 16 37 H 0.02 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.11 2.96 5.87 -51.93 -0.31 2.66 16 39 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 40 H 0.03 0.63 7.61 -51.93 -0.40 0.23 16 41 H 0.02 0.56 6.02 -51.93 -0.31 0.24 16 LS Contribution 325.34 15.07 4.90 4.90 Total: -1.00 -33.37 325.34 -6.56 -39.94 By element: Atomic # 1 Polarization: 9.79 SS G_CDS: -5.54 Total: 4.25 kcal Atomic # 6 Polarization: 13.72 SS G_CDS: -0.47 Total: 13.26 kcal Atomic # 7 Polarization: -57.71 SS G_CDS: -0.25 Total: -57.96 kcal Atomic # 8 Polarization: -21.56 SS G_CDS: -0.18 Total: -21.74 kcal Atomic # 14 Polarization: 22.38 SS G_CDS: -5.02 Total: 17.36 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -33.37 -6.56 -39.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071206061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.356 kcal (2) G-P(sol) polarization free energy of solvation -33.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.564 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.939 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds