Wall clock time and date at job start Tue Mar 31 2020 03:48:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.51369 * 2 1 4 4 C 1.53273 * 109.51275 * 120.10380 * 2 1 3 5 5 N 1.47173 * 108.55269 * 172.81690 * 4 2 1 6 6 C 1.34773 * 121.07033 * 128.89191 * 5 4 2 7 7 O 1.21347 * 120.00055 * 178.08810 * 6 5 4 8 8 C 1.49447 * 119.99869 * 358.08651 * 6 5 4 9 9 N 1.34776 * 120.00244 * 186.50662 * 8 6 5 10 10 O 1.21353 * 120.00377 * 6.50220 * 8 6 5 11 11 C 1.47307 * 117.86168 * 308.86570 * 5 4 2 12 12 C 1.52526 * 108.39653 * 49.40401 * 11 5 4 13 13 C 1.54772 * 110.09086 * 186.97143 * 12 11 5 14 14 C 1.55018 * 101.40598 * 206.98131 * 13 12 11 15 15 N 1.47478 * 104.99906 * 36.35832 * 14 13 12 16 16 C 1.36936 * 125.66396 * 155.95514 * 15 14 13 17 17 H 1.08002 * 119.99921 * 179.97438 * 16 15 14 18 18 C 1.38805 * 120.00089 * 359.97438 * 16 15 14 19 19 N 1.31614 * 120.00132 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00035 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.47055 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47027 * 119.99577 * 20 18 16 23 23 H 1.48495 * 109.47564 * 239.99671 * 20 18 16 24 24 C 1.47182 * 108.67390 * 335.93174 * 15 14 13 25 25 O 1.42070 * 111.11099 * 309.55985 * 12 11 5 26 26 H 1.09008 * 109.46557 * 299.89681 * 1 2 3 27 27 H 1.09003 * 109.47408 * 59.89620 * 1 2 3 28 28 H 1.08992 * 109.47186 * 179.90241 * 1 2 3 29 29 H 1.08994 * 109.62371 * 53.09706 * 4 2 1 30 30 H 1.08999 * 109.62400 * 292.53078 * 4 2 1 31 31 H 0.97001 * 119.99767 * 359.97438 * 9 8 6 32 32 H 0.97000 * 120.00403 * 180.02562 * 9 8 6 33 33 H 1.08995 * 109.68242 * 289.67407 * 11 5 4 34 34 H 1.08999 * 109.71043 * 169.14309 * 11 5 4 35 35 H 1.08999 * 111.12131 * 88.93695 * 13 12 11 36 36 H 1.09006 * 111.02031 * 324.97795 * 13 12 11 37 37 H 1.08996 * 110.35529 * 277.44411 * 14 13 12 38 38 H 1.09006 * 110.35111 * 155.26691 * 14 13 12 39 39 H 0.97006 * 120.00344 * 179.97438 * 19 18 16 40 40 H 1.09004 * 109.90731 * 120.88212 * 24 15 14 41 41 H 1.08995 * 109.91221 * 241.95864 * 24 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8941 1.0274 0.0000 4 6 2.0419 -0.7246 1.2498 5 7 3.5032 -0.8650 1.1442 6 6 4.3135 -0.4796 2.1497 7 8 5.5132 -0.6361 2.0562 8 6 3.7345 0.1407 3.3800 9 7 4.5492 0.6452 4.3277 10 8 2.5308 0.1901 3.5257 11 6 4.0515 -1.4409 -0.0958 12 6 3.4233 -0.7165 -1.2820 13 6 3.8371 -1.4046 -2.6051 14 6 3.7447 -0.2247 -3.6062 15 7 4.2032 0.9550 -2.8492 16 6 4.7298 2.0966 -3.3919 17 1 5.0369 2.9083 -2.7490 18 6 4.8690 2.2107 -4.7682 19 7 4.4953 1.2214 -5.5517 20 14 5.5868 3.7683 -5.5086 21 1 5.9260 4.7220 -4.4220 22 1 6.8148 3.4327 -6.2731 23 1 4.5908 4.3883 -6.4190 24 6 4.0002 0.7018 -1.4136 25 8 2.0079 -0.6774 -1.1664 26 1 -0.3633 0.5123 0.8910 27 1 -0.3634 0.5154 -0.8891 28 1 -0.3633 -1.0276 -0.0018 29 1 1.5832 -1.7112 1.3147 30 1 1.7934 -0.1432 2.1377 31 1 5.5114 0.6054 4.2114 32 1 4.1734 1.0474 5.1264 33 1 3.8111 -2.5029 -0.1450 34 1 5.1332 -1.3082 -0.1158 35 1 3.1385 -2.1981 -2.8704 36 1 4.8561 -1.7872 -2.5448 37 1 2.7149 -0.0870 -3.9359 38 1 4.3955 -0.4022 -4.4625 39 1 4.5922 1.3012 -6.5136 40 1 4.9526 0.7655 -0.8872 41 1 3.3003 1.4298 -1.0036 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001071206061.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:48:53 Heat of formation + Delta-G solvation = -83.235114 kcal Electronic energy + Delta-G solvation = -25769.248649 eV Core-core repulsion = 22071.175470 eV Total energy + Delta-G solvation = -3698.073179 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -42.28753 -40.86475 -39.38679 -38.01019 -36.19646 -34.86800 -34.60148 -32.96854 -31.11920 -30.12165 -27.94106 -27.60332 -26.29205 -24.45429 -23.17937 -22.12396 -21.36211 -20.43150 -19.17623 -18.89607 -18.48985 -17.83088 -17.54548 -17.07410 -16.84783 -16.54787 -16.04623 -15.69206 -15.51528 -15.17542 -15.04422 -15.00438 -14.28923 -14.13033 -13.92513 -13.52906 -13.38181 -13.09791 -13.03868 -12.83725 -12.71082 -12.34915 -12.24559 -12.14666 -11.98332 -11.94291 -11.75641 -11.53926 -11.02135 -10.98043 -10.78350 -10.28501 -9.69463 -8.94718 -7.80940 -5.26509 0.21516 1.23135 1.44228 1.45647 1.55918 2.00931 2.44800 2.47071 2.61803 3.27510 3.34689 3.46820 3.59436 3.76549 3.82118 3.95796 4.05042 4.23200 4.33385 4.49522 4.54500 4.55904 4.65817 4.73033 4.80045 4.89218 4.95032 4.98161 5.06930 5.08743 5.28060 5.40412 5.58926 5.67248 5.76224 5.82505 6.06247 6.25752 6.30419 6.58079 6.94271 7.06483 7.71537 8.36258 9.21029 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.018244 B = 0.004765 C = 0.004363 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.342627 B = 5874.967836 C = 6415.939528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.062 3.938 3 H 0.042 0.958 4 C 0.036 3.964 5 N -0.581 5.581 6 C 0.499 3.501 7 O -0.543 6.543 8 C 0.523 3.477 9 N -0.793 5.793 10 O -0.527 6.527 11 C 0.101 3.899 12 C 0.106 3.894 13 C -0.115 4.115 14 C 0.160 3.840 15 N -0.620 5.620 16 C -0.245 4.245 17 H 0.074 0.926 18 C -0.061 4.061 19 N -0.945 5.945 20 Si 0.982 3.018 21 H -0.270 1.270 22 H -0.286 1.286 23 H -0.290 1.290 24 C 0.122 3.878 25 O -0.371 6.371 26 H 0.097 0.903 27 H 0.054 0.946 28 H 0.077 0.923 29 H 0.093 0.907 30 H 0.166 0.834 31 H 0.423 0.577 32 H 0.427 0.573 33 H 0.106 0.894 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.091 0.909 37 H -0.015 1.015 38 H 0.079 0.921 39 H 0.249 0.751 40 H 0.022 0.978 41 H 0.015 0.985 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.984 -5.568 19.614 20.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C 0.004 3.996 3 H 0.060 0.940 4 C -0.085 4.085 5 N -0.313 5.313 6 C 0.282 3.718 7 O -0.421 6.421 8 C 0.302 3.698 9 N -0.360 5.360 10 O -0.406 6.406 11 C -0.021 4.021 12 C 0.065 3.935 13 C -0.154 4.154 14 C 0.036 3.964 15 N -0.347 5.347 16 C -0.374 4.374 17 H 0.092 0.908 18 C -0.254 4.254 19 N -0.594 5.594 20 Si 0.810 3.190 21 H -0.194 1.194 22 H -0.213 1.213 23 H -0.217 1.217 24 C -0.004 4.004 25 O -0.291 6.291 26 H 0.115 0.885 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.111 0.889 30 H 0.182 0.818 31 H 0.255 0.745 32 H 0.262 0.738 33 H 0.124 0.876 34 H 0.114 0.886 35 H 0.114 0.886 36 H 0.109 0.891 37 H 0.003 0.997 38 H 0.097 0.903 39 H 0.059 0.941 40 H 0.040 0.960 41 H 0.033 0.967 Dipole moment (debyes) X Y Z Total from point charges -4.175 -5.681 19.211 20.463 hybrid contribution 0.793 1.239 -0.529 1.564 sum -3.381 -4.441 18.681 19.497 Atomic orbital electron populations 1.21673 0.90050 1.03950 1.03302 1.22736 0.97260 0.94954 0.84669 0.93984 1.23977 0.77233 1.04642 1.02611 1.48178 1.08669 1.59132 1.15367 1.20372 0.86410 0.79890 0.85174 1.90760 1.15008 1.55709 1.80641 1.19795 0.86589 0.78893 0.84507 1.43387 1.11914 1.59032 1.21641 1.90379 1.14615 1.58354 1.77241 1.22256 1.00045 0.98504 0.81322 1.22125 0.81633 0.94136 0.95584 1.22913 1.01959 0.98180 0.92353 1.21703 0.96015 0.84062 0.94651 1.44780 1.72945 1.16059 1.00874 1.19426 1.33525 0.93445 0.90985 0.90766 1.25626 1.02146 1.01494 0.96153 1.70041 1.53952 1.32347 1.03095 0.84966 0.77373 0.78596 0.78086 1.19431 1.21283 1.21687 1.21823 0.96608 0.95481 0.86471 1.87849 1.19571 1.77029 1.44610 0.88458 0.92713 0.90433 0.88909 0.81840 0.74499 0.73779 0.87612 0.88599 0.88590 0.89054 0.99697 0.90314 0.94091 0.96008 0.96742 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.01 9.57 71.98 0.69 -2.32 16 2 C 0.06 1.81 3.17 30.69 0.10 1.91 16 3 H 0.04 1.43 6.23 -2.39 -0.01 1.41 16 4 C 0.04 0.89 5.68 86.34 0.49 1.38 16 5 N -0.58 -16.18 2.94 -820.02 -2.41 -18.59 16 6 C 0.50 13.48 7.78 87.27 0.68 14.16 16 7 O -0.54 -16.80 15.99 -3.24 -0.05 -16.85 16 8 C 0.52 11.09 8.08 87.27 0.71 11.79 16 9 N -0.79 -10.12 8.87 -174.50 -1.55 -11.67 16 10 O -0.53 -12.35 13.89 -3.26 -0.05 -12.40 16 11 C 0.10 3.04 5.20 86.07 0.45 3.49 16 12 C 0.11 3.91 0.81 -10.12 -0.01 3.90 16 13 C -0.12 -4.43 6.24 31.89 0.20 -4.23 16 14 C 0.16 8.28 5.88 86.88 0.51 8.79 16 15 N -0.62 -33.87 3.40 -692.50 -2.36 -36.23 16 16 C -0.25 -14.39 10.28 84.03 0.86 -13.53 16 17 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 18 C -0.06 -3.57 5.49 84.86 0.47 -3.10 16 19 N -0.95 -57.26 10.09 21.65 0.22 -57.05 16 20 Si 0.98 46.65 29.55 68.60 2.03 48.68 16 21 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 22 H -0.29 -13.36 7.11 99.48 0.71 -12.65 16 23 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 24 C 0.12 5.52 6.32 86.48 0.55 6.07 16 25 O -0.37 -13.37 9.91 -148.98 -1.48 -14.84 16 26 H 0.10 1.70 8.14 -2.38 -0.02 1.68 16 27 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 28 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 29 H 0.09 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.17 3.91 3.93 -73.42 -0.29 3.62 16 31 H 0.42 4.62 8.32 -92.71 -0.77 3.84 16 32 H 0.43 3.11 8.93 -92.71 -0.83 2.28 16 33 H 0.11 2.66 8.14 -2.39 -0.02 2.64 16 34 H 0.10 3.09 6.85 -2.39 -0.02 3.07 16 35 H 0.10 3.24 8.14 -2.39 -0.02 3.22 16 36 H 0.09 3.23 8.01 -2.38 -0.02 3.21 16 37 H -0.01 -0.85 8.14 -2.39 -0.02 -0.87 16 38 H 0.08 4.52 5.87 -2.38 -0.01 4.51 16 39 H 0.25 14.53 8.31 -92.70 -0.77 13.76 16 40 H 0.02 1.01 7.61 -2.38 -0.02 0.99 16 41 H 0.01 0.69 6.02 -2.39 -0.01 0.68 16 Total: -1.00 -73.86 325.34 -0.75 -74.61 By element: Atomic # 1 Polarization: 16.81 SS G_CDS: -0.79 Total: 16.02 kcal Atomic # 6 Polarization: 22.62 SS G_CDS: 5.69 Total: 28.31 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -6.09 Total: -123.53 kcal Atomic # 8 Polarization: -42.51 SS G_CDS: -1.57 Total: -44.09 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -73.86 -0.75 -74.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001071206061.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.623 kcal (2) G-P(sol) polarization free energy of solvation -73.864 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.748 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.612 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.235 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds