Wall clock time and date at job start Tue Mar 31 2020 04:19:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34418 * 124.34513 * 2 1 4 4 O 1.21278 * 124.94495 * 0.39576 * 3 2 1 5 5 C 1.51280 * 110.11382 * 180.38528 * 3 2 1 6 6 C 1.54627 * 104.19635 * 16.24543 * 5 3 2 7 7 C 1.46766 * 124.34973 * 179.97438 * 2 1 3 8 8 H 1.08993 * 110.24325 * 282.09355 * 7 2 1 9 9 C 1.50694 * 110.24603 * 44.00886 * 7 2 1 10 10 O 1.21284 * 120.00193 * 18.54535 * 9 7 2 11 11 N 1.34769 * 119.99923 * 198.54168 * 9 7 2 12 12 C 1.46508 * 120.00109 * 180.02562 * 11 9 7 13 13 H 1.09000 * 110.88453 * 37.42451 * 12 11 9 14 14 C 1.54912 * 111.00159 * 273.54732 * 12 11 9 15 15 N 1.47423 * 104.83282 * 204.91272 * 14 12 11 16 16 C 1.36934 * 125.65239 * 204.09370 * 15 14 12 17 17 H 1.08000 * 119.99974 * 9.72642 * 16 15 14 18 18 C 1.38814 * 119.99959 * 189.73073 * 16 15 14 19 19 N 1.31621 * 119.99639 * 208.99625 * 18 16 15 20 20 Si 1.86796 * 120.00282 * 29.27282 * 18 16 15 21 21 H 1.48507 * 109.47061 * 275.08048 * 20 18 16 22 22 H 1.48507 * 109.47149 * 35.07417 * 20 18 16 23 23 H 1.48498 * 109.47334 * 155.07858 * 20 18 16 24 24 C 1.47030 * 108.70115 * 24.36032 * 15 14 12 25 25 C 1.54339 * 107.26421 * 358.58259 * 24 15 14 26 26 H 1.08997 * 110.51340 * 96.45086 * 25 24 15 27 27 O 1.42896 * 111.00127 * 219.60472 * 25 24 15 28 28 H 1.09002 * 109.47671 * 270.02389 * 1 2 3 29 29 H 1.08998 * 109.47185 * 30.03403 * 1 2 3 30 30 H 1.09003 * 109.46824 * 150.02824 * 1 2 3 31 31 H 1.08994 * 110.49294 * 134.92771 * 5 3 2 32 32 H 1.09008 * 110.48542 * 257.44172 * 5 3 2 33 33 H 1.09005 * 110.97187 * 217.08323 * 6 5 3 34 34 H 1.09010 * 110.96596 * 93.32855 * 6 5 3 35 35 H 0.97000 * 120.00593 * 0.02562 * 11 9 7 36 36 H 1.09007 * 110.36471 * 86.07807 * 14 12 11 37 37 H 1.08997 * 110.36913 * 323.75702 * 14 12 11 38 38 H 0.96998 * 119.99892 * 5.16882 * 19 18 16 39 39 H 1.08990 * 109.88387 * 118.12527 * 24 15 14 40 40 H 1.08999 * 109.88159 * 239.29499 * 24 15 14 41 41 H 0.96703 * 114.00106 * 293.78194 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2233 1.1098 0.0000 4 8 1.7945 2.2442 0.0069 5 6 3.6897 0.7379 -0.0096 6 6 3.7011 -0.7487 -0.4346 7 6 2.2931 -1.2117 0.0005 8 1 2.3290 -1.6435 1.0007 9 6 1.7478 -2.2165 -0.9813 10 8 0.9882 -1.8586 -1.8565 11 7 2.1043 -3.5127 -0.8870 12 6 1.5746 -4.4895 -1.8419 13 1 1.4996 -4.0565 -2.8394 14 6 0.2052 -5.0399 -1.3711 15 7 0.0888 -6.3618 -2.0132 16 6 -1.0826 -7.0174 -2.2836 17 1 -2.0267 -6.5058 -2.1686 18 6 -1.0565 -8.3396 -2.7055 19 7 -2.0126 -8.8011 -3.4836 20 14 0.3313 -9.4661 -2.1629 21 1 1.4904 -9.2989 -3.0761 22 1 0.7384 -9.1181 -0.7777 23 1 -0.1314 -10.8765 -2.2033 24 6 1.4391 -6.8626 -2.3093 25 6 2.4394 -5.7776 -1.8572 26 1 2.8185 -5.9995 -0.8597 27 8 3.5155 -5.6530 -2.7890 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 4.2328 1.3458 -0.7331 32 1 4.1196 0.8556 0.9852 33 1 4.4754 -1.3009 0.0981 34 1 3.8275 -0.8451 -1.5131 35 1 2.7115 -3.7991 -0.1869 36 1 -0.6009 -4.3850 -1.7022 37 1 0.1902 -5.1424 -0.2861 38 1 -2.6940 -8.2000 -3.8232 39 1 1.6199 -7.7874 -1.7616 40 1 1.5432 -7.0370 -3.3801 41 1 4.0865 -6.4319 -2.8370 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001077557833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:26 Heat of formation + Delta-G solvation = -72.661084 kcal Electronic energy + Delta-G solvation = -24784.470879 eV Core-core repulsion = 21086.856224 eV Total energy + Delta-G solvation = -3697.614655 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.15680 -39.55610 -38.25079 -36.36677 -35.45901 -34.44022 -33.02277 -32.10242 -29.55592 -28.23655 -27.47954 -26.82247 -24.13849 -22.88897 -21.20211 -21.02638 -20.36619 -19.64773 -18.04913 -17.62176 -17.15909 -17.03754 -16.37082 -16.07282 -15.43729 -15.21304 -14.70770 -14.42995 -14.14281 -14.00327 -13.77277 -13.59544 -13.05076 -12.95479 -12.89318 -12.77286 -12.63057 -12.33877 -12.12275 -11.91515 -11.71653 -11.51430 -11.24218 -10.70135 -10.58097 -10.26379 -10.06869 -9.96074 -9.59798 -9.33336 -9.14445 -8.91085 -8.53747 -7.22320 -6.45470 -3.28194 2.27925 2.34902 2.64362 3.05316 3.31467 3.41940 3.60517 3.94029 4.01037 4.14547 4.32992 4.53521 4.53833 4.63872 4.71411 4.94522 5.05567 5.12102 5.18351 5.21682 5.25934 5.36440 5.41153 5.43449 5.51549 5.70331 5.71330 5.77004 6.12871 6.15726 6.22479 6.39774 6.48978 6.58962 6.82156 7.34631 7.55832 7.67002 7.89353 8.06540 8.24700 8.91980 9.46228 10.10480 11.03545 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.029174 B = 0.003644 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.514522 B = 7682.094553 C = 8354.563736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.091 3.909 2 N -0.599 5.599 3 C 0.518 3.482 4 O -0.531 6.531 5 C -0.153 4.153 6 C -0.120 4.120 7 C 0.113 3.887 8 H 0.105 0.895 9 C 0.506 3.494 10 O -0.520 6.520 11 N -0.710 5.710 12 C 0.141 3.859 13 H 0.107 0.893 14 C 0.129 3.871 15 N -0.601 5.601 16 C -0.336 4.336 17 H 0.081 0.919 18 C -0.012 4.012 19 N -0.908 5.908 20 Si 1.053 2.947 21 H -0.293 1.293 22 H -0.294 1.294 23 H -0.296 1.296 24 C 0.092 3.908 25 C 0.087 3.913 26 H 0.068 0.932 27 O -0.558 6.558 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.087 0.913 31 H 0.106 0.894 32 H 0.108 0.892 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.400 0.600 36 H 0.057 0.943 37 H 0.027 0.973 38 H 0.266 0.734 39 H 0.033 0.967 40 H 0.055 0.945 41 H 0.379 0.621 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.746 12.319 10.076 22.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.333 5.333 3 C 0.306 3.694 4 O -0.408 6.408 5 C -0.193 4.193 6 C -0.158 4.158 7 C 0.005 3.995 8 H 0.123 0.877 9 C 0.290 3.710 10 O -0.395 6.395 11 N -0.361 5.361 12 C 0.035 3.965 13 H 0.125 0.875 14 C 0.002 3.998 15 N -0.330 5.330 16 C -0.463 4.463 17 H 0.099 0.901 18 C -0.213 4.213 19 N -0.547 5.547 20 Si 0.886 3.114 21 H -0.221 1.221 22 H -0.222 1.222 23 H -0.224 1.224 24 C -0.034 4.034 25 C 0.027 3.973 26 H 0.086 0.914 27 O -0.363 6.363 28 H 0.072 0.928 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.124 0.876 32 H 0.126 0.874 33 H 0.120 0.880 34 H 0.109 0.891 35 H 0.234 0.766 36 H 0.075 0.925 37 H 0.045 0.955 38 H 0.076 0.924 39 H 0.050 0.950 40 H 0.073 0.927 41 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges 15.005 12.176 9.240 21.420 hybrid contribution -0.064 0.579 0.623 0.853 sum 14.941 12.755 9.864 21.982 Atomic orbital electron populations 1.21719 0.77101 1.04714 1.01472 1.47849 1.06925 1.05598 1.72923 1.20841 0.89222 0.84189 0.75127 1.90731 1.78723 1.20832 1.50473 1.22356 0.94868 0.97034 1.05032 1.22608 0.93958 0.95545 1.03713 1.21644 0.91948 0.86446 0.99459 0.87728 1.20564 0.81708 0.82914 0.85799 1.90759 1.34689 1.79085 1.34918 1.45847 1.49225 1.07305 1.33761 1.22249 0.93368 0.86789 0.94049 0.87487 1.21874 0.93961 0.88349 0.95613 1.44597 1.01164 1.17069 1.70152 1.20043 0.84109 0.96464 1.45639 0.90141 1.25768 1.02995 0.95356 0.97222 1.70875 1.16335 1.39385 1.28108 0.83991 0.75263 0.76314 0.75868 1.22132 1.22158 1.22385 1.22306 0.86069 0.94997 1.00011 1.23030 0.87163 0.95357 0.91797 0.91395 1.86515 1.42271 1.43693 1.63831 0.92760 0.90579 0.89457 0.87551 0.87360 0.87994 0.89132 0.76614 0.92499 0.95535 0.92364 0.95015 0.92725 0.77359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.08 10.43 59.85 0.62 1.70 16 2 N -0.60 -6.83 3.00 -174.03 -0.52 -7.36 16 3 C 0.52 6.21 8.02 -10.86 -0.09 6.13 16 4 O -0.53 -8.48 17.60 5.56 0.10 -8.38 16 5 C -0.15 -1.08 6.86 -26.74 -0.18 -1.26 16 6 C -0.12 -0.75 6.67 -25.10 -0.17 -0.92 16 7 C 0.11 0.98 3.71 -68.17 -0.25 0.73 16 8 H 0.11 0.61 8.14 -51.93 -0.42 0.18 16 9 C 0.51 6.25 6.53 -10.99 -0.07 6.18 16 10 O -0.52 -8.80 14.34 5.55 0.08 -8.72 16 11 N -0.71 -8.16 5.23 -51.73 -0.27 -8.43 16 12 C 0.14 2.25 3.04 -65.78 -0.20 2.05 16 13 H 0.11 2.02 7.73 -51.93 -0.40 1.62 16 14 C 0.13 2.52 6.93 -2.53 -0.02 2.51 16 15 N -0.60 -14.29 3.29 -170.06 -0.56 -14.85 16 16 C -0.34 -9.45 10.41 -15.06 -0.16 -9.61 16 17 H 0.08 2.40 8.06 -52.49 -0.42 1.98 16 18 C -0.01 -0.34 5.41 -17.43 -0.09 -0.43 16 19 N -0.91 -27.89 13.70 55.49 0.76 -27.13 16 20 Si 1.05 25.41 24.71 -169.99 -4.20 21.21 16 21 H -0.29 -6.56 6.72 56.52 0.38 -6.18 16 22 H -0.29 -6.68 6.84 56.52 0.39 -6.29 16 23 H -0.30 -7.29 7.11 56.52 0.40 -6.89 16 24 C 0.09 1.88 4.73 -3.05 -0.01 1.86 16 25 C 0.09 1.30 3.94 -24.89 -0.10 1.20 16 26 H 0.07 0.83 8.00 -51.93 -0.42 0.42 16 27 O -0.56 -7.60 13.40 -35.23 -0.47 -8.07 16 28 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.08 0.96 7.93 -51.93 -0.41 0.54 16 30 H 0.09 1.15 5.98 -51.93 -0.31 0.84 16 31 H 0.11 0.68 8.14 -51.93 -0.42 0.26 16 32 H 0.11 0.52 8.14 -51.92 -0.42 0.10 16 33 H 0.10 0.31 8.14 -51.93 -0.42 -0.11 16 34 H 0.09 0.68 7.91 -51.92 -0.41 0.27 16 35 H 0.40 3.12 8.51 -40.82 -0.35 2.78 16 36 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 37 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.27 8.12 8.73 -40.82 -0.36 7.77 16 39 H 0.03 0.67 3.91 -51.93 -0.20 0.46 16 40 H 0.05 1.21 7.79 -51.93 -0.40 0.80 16 41 H 0.38 3.50 9.12 45.56 0.42 3.92 16 LS Contribution 333.27 15.07 5.02 5.02 Total: -1.00 -37.29 333.27 -5.85 -43.14 By element: Atomic # 1 Polarization: 8.48 SS G_CDS: -5.06 Total: 3.42 kcal Atomic # 6 Polarization: 10.87 SS G_CDS: -0.72 Total: 10.15 kcal Atomic # 7 Polarization: -57.17 SS G_CDS: -0.59 Total: -57.77 kcal Atomic # 8 Polarization: -24.88 SS G_CDS: -0.29 Total: -25.17 kcal Atomic # 14 Polarization: 25.41 SS G_CDS: -4.20 Total: 21.21 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -37.29 -5.85 -43.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077557833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.521 kcal (2) G-P(sol) polarization free energy of solvation -37.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.815 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.846 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.661 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds