Wall clock time and date at job start Tue Mar 31 2020 04:19:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.34418 * 124.34513 * 2 1 4 4 O 1.21278 * 124.94495 * 0.39576 * 3 2 1 5 5 C 1.51280 * 110.11382 * 180.38528 * 3 2 1 6 6 C 1.54627 * 104.19635 * 16.24543 * 5 3 2 7 7 C 1.46766 * 124.34973 * 179.97438 * 2 1 3 8 8 H 1.08993 * 110.24325 * 282.09355 * 7 2 1 9 9 C 1.50694 * 110.24603 * 44.00886 * 7 2 1 10 10 O 1.21284 * 120.00193 * 18.54535 * 9 7 2 11 11 N 1.34769 * 119.99923 * 198.54168 * 9 7 2 12 12 C 1.46508 * 120.00109 * 180.02562 * 11 9 7 13 13 H 1.09000 * 110.88453 * 37.42451 * 12 11 9 14 14 C 1.54912 * 111.00159 * 273.54732 * 12 11 9 15 15 N 1.47423 * 104.83282 * 204.91272 * 14 12 11 16 16 C 1.36934 * 125.65239 * 204.09370 * 15 14 12 17 17 H 1.08000 * 119.99974 * 9.72642 * 16 15 14 18 18 C 1.38814 * 119.99959 * 189.73073 * 16 15 14 19 19 N 1.31621 * 119.99639 * 208.99625 * 18 16 15 20 20 Si 1.86796 * 120.00282 * 29.27282 * 18 16 15 21 21 H 1.48507 * 109.47061 * 275.08048 * 20 18 16 22 22 H 1.48507 * 109.47149 * 35.07417 * 20 18 16 23 23 H 1.48498 * 109.47334 * 155.07858 * 20 18 16 24 24 C 1.47030 * 108.70115 * 24.36032 * 15 14 12 25 25 C 1.54339 * 107.26421 * 358.58259 * 24 15 14 26 26 H 1.08997 * 110.51340 * 96.45086 * 25 24 15 27 27 O 1.42896 * 111.00127 * 219.60472 * 25 24 15 28 28 H 1.09002 * 109.47671 * 270.02389 * 1 2 3 29 29 H 1.08998 * 109.47185 * 30.03403 * 1 2 3 30 30 H 1.09003 * 109.46824 * 150.02824 * 1 2 3 31 31 H 1.08994 * 110.49294 * 134.92771 * 5 3 2 32 32 H 1.09008 * 110.48542 * 257.44172 * 5 3 2 33 33 H 1.09005 * 110.97187 * 217.08323 * 6 5 3 34 34 H 1.09010 * 110.96596 * 93.32855 * 6 5 3 35 35 H 0.97000 * 120.00593 * 0.02562 * 11 9 7 36 36 H 1.09007 * 110.36471 * 86.07807 * 14 12 11 37 37 H 1.08997 * 110.36913 * 323.75702 * 14 12 11 38 38 H 0.96998 * 119.99892 * 5.16882 * 19 18 16 39 39 H 1.08990 * 109.88387 * 118.12527 * 24 15 14 40 40 H 1.08999 * 109.88159 * 239.29499 * 24 15 14 41 41 H 0.96703 * 114.00106 * 293.78194 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2233 1.1098 0.0000 4 8 1.7945 2.2442 0.0069 5 6 3.6897 0.7379 -0.0096 6 6 3.7011 -0.7487 -0.4346 7 6 2.2931 -1.2117 0.0005 8 1 2.3290 -1.6435 1.0007 9 6 1.7478 -2.2165 -0.9813 10 8 0.9882 -1.8586 -1.8565 11 7 2.1043 -3.5127 -0.8870 12 6 1.5746 -4.4895 -1.8419 13 1 1.4996 -4.0565 -2.8394 14 6 0.2052 -5.0399 -1.3711 15 7 0.0888 -6.3618 -2.0132 16 6 -1.0826 -7.0174 -2.2836 17 1 -2.0267 -6.5058 -2.1686 18 6 -1.0565 -8.3396 -2.7055 19 7 -2.0126 -8.8011 -3.4836 20 14 0.3313 -9.4661 -2.1629 21 1 1.4904 -9.2989 -3.0761 22 1 0.7384 -9.1181 -0.7777 23 1 -0.1314 -10.8765 -2.2033 24 6 1.4391 -6.8626 -2.3093 25 6 2.4394 -5.7776 -1.8572 26 1 2.8185 -5.9995 -0.8597 27 8 3.5155 -5.6530 -2.7890 28 1 -0.3634 0.0004 1.0276 29 1 -0.3633 0.8897 -0.5143 30 1 -0.3633 -0.8903 -0.5134 31 1 4.2328 1.3458 -0.7331 32 1 4.1196 0.8556 0.9852 33 1 4.4754 -1.3009 0.0981 34 1 3.8275 -0.8451 -1.5131 35 1 2.7115 -3.7991 -0.1869 36 1 -0.6009 -4.3850 -1.7022 37 1 0.1902 -5.1424 -0.2861 38 1 -2.6940 -8.2000 -3.8232 39 1 1.6199 -7.7874 -1.7616 40 1 1.5432 -7.0370 -3.3801 41 1 4.0865 -6.4319 -2.8370 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001077557833.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:25 Heat of formation + Delta-G solvation = -106.819134 kcal Electronic energy + Delta-G solvation = -24785.952084 eV Core-core repulsion = 21086.856224 eV Total energy + Delta-G solvation = -3699.095859 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.03884 -40.69491 -39.50775 -37.31522 -36.81203 -35.73559 -34.15615 -33.66748 -30.89542 -29.60913 -28.72105 -27.67398 -25.82989 -23.68435 -22.73860 -22.17084 -21.70700 -20.53732 -19.71750 -18.83851 -18.29496 -17.99143 -17.53539 -17.06974 -16.62012 -16.40337 -16.09579 -15.71450 -15.53956 -14.93124 -14.81014 -14.70176 -14.55454 -14.39495 -14.25721 -13.71926 -13.58907 -13.37242 -13.34883 -13.11821 -12.96223 -12.82816 -12.48288 -12.11391 -12.05632 -11.64439 -11.30298 -11.23594 -11.01398 -10.90084 -10.68058 -10.25306 -9.82098 -9.21731 -8.74577 -5.48282 1.35874 1.38491 1.44083 1.52604 1.71028 1.78731 2.13127 2.54769 2.88096 3.02635 3.24812 3.33940 3.35875 3.60810 3.68818 3.87082 3.99488 3.99877 4.08567 4.23466 4.27012 4.38628 4.40623 4.58430 4.62590 4.74335 4.78012 4.84054 4.92269 4.94517 4.99776 5.06347 5.30257 5.33103 5.52663 5.99362 6.02930 6.46063 6.74244 6.84638 7.01539 7.16510 7.38769 8.01963 8.75816 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.029174 B = 0.003644 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 959.514522 B = 7682.094553 C = 8354.563736 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.608 5.608 3 C 0.503 3.497 4 O -0.584 6.584 5 C -0.140 4.140 6 C -0.109 4.109 7 C 0.116 3.884 8 H 0.151 0.849 9 C 0.504 3.496 10 O -0.575 6.575 11 N -0.689 5.689 12 C 0.155 3.845 13 H 0.071 0.929 14 C 0.129 3.871 15 N -0.624 5.624 16 C -0.334 4.334 17 H 0.039 0.961 18 C -0.071 4.071 19 N -0.945 5.945 20 Si 1.102 2.898 21 H -0.263 1.263 22 H -0.263 1.263 23 H -0.306 1.306 24 C 0.080 3.920 25 C 0.111 3.889 26 H 0.119 0.881 27 O -0.563 6.563 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.069 0.931 31 H 0.113 0.887 32 H 0.142 0.858 33 H 0.152 0.848 34 H 0.075 0.925 35 H 0.425 0.575 36 H 0.022 0.978 37 H 0.050 0.950 38 H 0.249 0.751 39 H 0.043 0.957 40 H 0.031 0.969 41 H 0.402 0.598 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.751 11.784 12.890 27.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 N -0.340 5.340 3 C 0.293 3.707 4 O -0.465 6.465 5 C -0.180 4.180 6 C -0.147 4.147 7 C 0.009 3.991 8 H 0.168 0.832 9 C 0.290 3.710 10 O -0.453 6.453 11 N -0.342 5.342 12 C 0.048 3.952 13 H 0.089 0.911 14 C 0.002 3.998 15 N -0.353 5.353 16 C -0.462 4.462 17 H 0.057 0.943 18 C -0.265 4.265 19 N -0.587 5.587 20 Si 0.927 3.073 21 H -0.189 1.189 22 H -0.189 1.189 23 H -0.235 1.235 24 C -0.045 4.045 25 C 0.051 3.949 26 H 0.136 0.864 27 O -0.371 6.371 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.088 0.912 31 H 0.131 0.869 32 H 0.160 0.840 33 H 0.170 0.830 34 H 0.093 0.907 35 H 0.264 0.736 36 H 0.041 0.959 37 H 0.067 0.933 38 H 0.058 0.942 39 H 0.060 0.940 40 H 0.049 0.951 41 H 0.253 0.747 Dipole moment (debyes) X Y Z Total from point charges 20.098 11.641 12.097 26.187 hybrid contribution -1.745 0.841 -0.316 1.963 sum 18.353 12.482 11.781 25.128 Atomic orbital electron populations 1.21598 0.78385 1.02875 1.02115 1.48090 1.06759 1.06922 1.72272 1.21846 0.91539 0.83425 0.73883 1.90695 1.80074 1.22876 1.52838 1.22419 0.90797 0.97506 1.07233 1.22749 0.93238 0.95192 1.03523 1.22001 0.92391 0.84344 1.00315 0.83188 1.21350 0.80598 0.83488 0.85559 1.90760 1.37177 1.79989 1.37373 1.45535 1.49066 1.06219 1.33419 1.21664 0.92098 0.88187 0.93288 0.91053 1.21959 0.95415 0.86034 0.96391 1.44578 1.01419 1.18334 1.70944 1.19886 0.84835 0.96726 1.44763 0.94289 1.27253 1.05195 0.97357 0.96742 1.71004 1.17647 1.39247 1.30808 0.83400 0.73159 0.73278 0.77435 1.18908 1.18901 1.23464 1.22572 0.85498 0.97512 0.98949 1.22814 0.86223 0.91812 0.94068 0.86396 1.86490 1.41728 1.45178 1.63703 0.90809 0.92485 0.91231 0.86892 0.83980 0.82960 0.90656 0.73595 0.95946 0.93253 0.94248 0.93967 0.95081 0.74675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 2.24 10.43 127.77 1.33 3.57 16 2 N -0.61 -13.02 3.00 -823.10 -2.47 -15.49 16 3 C 0.50 11.39 8.02 87.90 0.71 12.09 16 4 O -0.58 -18.90 17.60 -3.02 -0.05 -18.96 16 5 C -0.14 -1.41 6.86 30.59 0.21 -1.20 16 6 C -0.11 -0.80 6.67 31.65 0.21 -0.59 16 7 C 0.12 1.57 3.71 44.69 0.17 1.74 16 8 H 0.15 0.79 8.14 -2.39 -0.02 0.77 16 9 C 0.50 11.36 6.53 87.66 0.57 11.93 16 10 O -0.57 -19.82 14.34 -3.04 -0.04 -19.87 16 11 N -0.69 -13.26 5.23 -435.96 -2.28 -15.54 16 12 C 0.15 4.65 3.04 46.38 0.14 4.79 16 13 H 0.07 2.70 7.73 -2.39 -0.02 2.69 16 14 C 0.13 4.99 6.93 86.86 0.60 5.59 16 15 N -0.62 -29.67 3.29 -691.94 -2.28 -31.95 16 16 C -0.33 -19.53 10.41 84.03 0.87 -18.66 16 17 H 0.04 2.51 8.06 -2.91 -0.02 2.49 16 18 C -0.07 -4.17 5.41 84.86 0.46 -3.71 16 19 N -0.95 -60.61 13.70 21.65 0.30 -60.32 16 20 Si 1.10 50.31 24.71 68.60 1.70 52.00 16 21 H -0.26 -10.66 6.72 99.48 0.67 -9.99 16 22 H -0.26 -10.64 6.84 99.48 0.68 -9.96 16 23 H -0.31 -14.41 7.11 99.48 0.71 -13.71 16 24 C 0.08 3.06 4.73 86.73 0.41 3.47 16 25 C 0.11 2.85 3.94 31.79 0.13 2.97 16 26 H 0.12 1.99 8.00 -2.39 -0.02 1.97 16 27 O -0.56 -12.69 13.40 -148.98 -2.00 -14.69 16 28 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 29 H 0.06 1.55 7.93 -2.39 -0.02 1.54 16 30 H 0.07 1.93 5.98 -2.39 -0.01 1.91 16 31 H 0.11 1.06 8.14 -2.39 -0.02 1.05 16 32 H 0.14 0.55 8.14 -2.38 -0.02 0.53 16 33 H 0.15 -0.30 8.14 -2.38 -0.02 -0.32 16 34 H 0.07 0.85 7.91 -2.38 -0.02 0.83 16 35 H 0.42 3.95 8.51 -92.71 -0.79 3.17 16 36 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 37 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 38 H 0.25 16.21 8.73 -92.71 -0.81 15.40 16 39 H 0.04 1.57 3.91 -2.39 -0.01 1.56 16 40 H 0.03 1.33 7.79 -2.39 -0.02 1.31 16 41 H 0.40 5.21 9.12 -74.06 -0.68 4.53 16 Total: -1.00 -91.14 333.27 -1.82 -92.95 By element: Atomic # 1 Polarization: 10.36 SS G_CDS: -0.50 Total: 9.86 kcal Atomic # 6 Polarization: 16.18 SS G_CDS: 5.81 Total: 21.99 kcal Atomic # 7 Polarization: -116.56 SS G_CDS: -6.73 Total: -123.29 kcal Atomic # 8 Polarization: -51.42 SS G_CDS: -2.09 Total: -53.51 kcal Atomic # 14 Polarization: 50.31 SS G_CDS: 1.70 Total: 52.00 kcal Total: -91.14 -1.82 -92.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001077557833.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.866 kcal (2) G-P(sol) polarization free energy of solvation -91.137 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.954 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds