Wall clock time and date at job start Tue Mar 31 2020 05:04:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99708 * 2 1 4 4 H 1.48502 * 109.46916 * 269.99519 * 3 2 1 5 5 H 1.48496 * 109.47305 * 29.99375 * 3 2 1 6 6 H 1.48500 * 109.46914 * 149.99698 * 3 2 1 7 7 C 1.38810 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99521 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00391 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47531 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47233 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00192 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99341 * 354.84592 * 13 12 11 15 15 C 1.50691 * 120.00121 * 175.12527 * 13 12 11 16 16 H 1.08995 * 109.47582 * 326.11082 * 15 13 12 17 17 C 1.53003 * 109.47199 * 86.11168 * 15 13 12 18 18 C 1.52997 * 117.49735 * 10.81819 * 17 15 13 19 19 C 1.53001 * 60.00355 * 252.50939 * 18 17 15 20 20 N 1.46898 * 109.47354 * 206.10921 * 15 13 12 21 21 C 1.47010 * 111.00353 * 178.05745 * 20 15 13 22 22 C 1.53098 * 109.25982 * 177.60669 * 21 20 15 23 23 O 1.43019 * 109.25525 * 56.84911 * 22 21 20 24 24 C 1.43014 * 113.73970 * 301.32701 * 23 22 21 25 25 C 1.47018 * 110.99939 * 54.42066 * 20 15 13 26 26 H 0.97002 * 120.00017 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99987 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47282 * 59.99205 * 10 9 7 29 29 H 1.09008 * 109.46885 * 299.99788 * 10 9 7 30 30 H 1.08998 * 109.47404 * 59.99381 * 11 10 9 31 31 H 1.09005 * 109.46726 * 299.99389 * 11 10 9 32 32 H 0.97004 * 119.99920 * 359.97438 * 12 11 10 33 33 H 1.08998 * 115.55232 * 156.52908 * 17 15 13 34 34 H 1.08995 * 117.49950 * 359.97438 * 18 17 15 35 35 H 1.09007 * 117.49961 * 145.02219 * 18 17 15 36 36 H 1.08997 * 117.50106 * 252.51240 * 19 18 17 37 37 H 1.09003 * 117.49499 * 107.48054 * 19 18 17 38 38 H 1.08996 * 109.50598 * 297.54342 * 21 20 15 39 39 H 1.09006 * 109.50630 * 57.67547 * 21 20 15 40 40 H 1.09002 * 109.50453 * 296.91596 * 22 21 20 41 41 H 1.09002 * 109.54505 * 176.80747 * 22 21 20 42 42 H 1.09003 * 109.51009 * 298.74159 * 24 23 22 43 43 H 1.08997 * 109.54252 * 178.62605 * 24 23 22 44 44 H 1.09004 * 109.50301 * 302.33064 * 25 20 15 45 45 H 1.08993 * 109.50395 * 62.41830 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7964 -6.0884 0.0018 13 6 1.1226 -7.2557 0.0019 14 8 -0.0866 -7.2577 0.0959 15 6 1.8720 -8.5583 -0.1084 16 1 2.7482 -8.4210 -0.7420 17 6 2.3157 -9.0110 1.2842 18 6 1.7355 -8.2651 2.4876 19 6 3.1980 -8.0553 2.0900 20 7 0.9959 -9.5789 -0.6988 21 6 1.7091 -10.8537 -0.8646 22 6 0.7451 -11.9024 -1.4256 23 8 0.1942 -11.4262 -2.6565 24 6 -0.5081 -10.1866 -2.5315 25 6 0.4432 -9.1205 -1.9817 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.6848 -3.7144 0.8904 29 1 2.6847 -3.7145 -0.8895 30 1 0.4368 -4.7621 -0.8885 31 1 0.4376 -4.7618 0.8915 32 1 2.7664 -6.0883 0.0014 33 1 2.4995 -10.0796 1.3949 34 1 1.0382 -7.4518 2.2872 35 1 1.5374 -8.8432 3.3903 36 1 3.9620 -8.4952 2.7309 37 1 3.4623 -7.1041 1.6278 38 1 2.5413 -10.7180 -1.5552 39 1 2.0877 -11.1873 0.1016 40 1 -0.0588 -12.0773 -0.7105 41 1 1.2827 -12.8338 -1.6037 42 1 -1.3485 -10.3116 -1.8486 43 1 -0.8767 -9.8762 -3.5092 44 1 -0.1022 -8.1889 -1.8309 45 1 1.2553 -8.9564 -2.6900 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151814666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:45 Heat of formation + Delta-G solvation = -24.730601 kcal Electronic energy + Delta-G solvation = -24675.801640 eV Core-core repulsion = 21116.098501 eV Total energy + Delta-G solvation = -3559.703139 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.83445 -39.15907 -37.23794 -35.84980 -35.21668 -33.83370 -31.44259 -31.29276 -29.54688 -27.68332 -25.31022 -24.60288 -23.55953 -22.64357 -21.75757 -21.30043 -20.80516 -19.63236 -17.54122 -17.17802 -17.03884 -16.40655 -16.10694 -15.52047 -15.35479 -15.04114 -14.91002 -14.65452 -14.54475 -14.11288 -13.95072 -13.57179 -13.21019 -13.00182 -12.83152 -12.50974 -12.25085 -11.69020 -11.65540 -11.57690 -11.27143 -11.14597 -10.91593 -10.86039 -10.82811 -10.58884 -10.42036 -10.14336 -9.97540 -9.83926 -9.57211 -9.02092 -8.86975 -8.62545 -7.02749 -5.82360 -3.13335 2.59042 2.91268 3.40331 3.41020 3.46028 3.47448 3.61039 3.72229 4.35714 4.54763 4.56004 4.60768 4.67136 4.71826 4.78405 4.88836 4.94211 5.02634 5.08684 5.16800 5.32365 5.41206 5.45523 5.46939 5.48853 5.50885 5.66844 5.70948 5.72675 5.74474 5.85113 5.91749 5.97391 6.10652 6.43216 6.54089 6.63288 6.65398 6.70411 6.89078 7.54341 7.63051 8.25437 8.35175 9.46457 10.00768 10.35460 11.40169 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002886 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.386028 B = 9701.337543 C =10413.392862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C -0.011 4.011 3 Si 0.910 3.090 4 H -0.289 1.289 5 H -0.290 1.290 6 H -0.281 1.281 7 C -0.245 4.245 8 H 0.072 0.928 9 N -0.729 5.729 10 C 0.145 3.855 11 C 0.112 3.888 12 N -0.724 5.724 13 C 0.517 3.483 14 O -0.518 6.518 15 C 0.099 3.901 16 H 0.064 0.936 17 C -0.145 4.145 18 C -0.169 4.169 19 C -0.178 4.178 20 N -0.510 5.510 21 C 0.016 3.984 22 C 0.065 3.935 23 O -0.388 6.388 24 C 0.068 3.932 25 C 0.010 3.990 26 H 0.257 0.743 27 H 0.386 0.614 28 H 0.024 0.976 29 H 0.023 0.977 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.397 0.603 33 H 0.117 0.883 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.100 0.900 37 H 0.096 0.904 38 H 0.044 0.956 39 H 0.090 0.910 40 H 0.061 0.939 41 H 0.097 0.903 42 H 0.063 0.937 43 H 0.099 0.901 44 H 0.102 0.898 45 H 0.040 0.960 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.764 -24.866 -0.351 25.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.208 4.208 3 Si 0.741 3.259 4 H -0.216 1.216 5 H -0.217 1.217 6 H -0.207 1.207 7 C -0.376 4.376 8 H 0.089 0.911 9 N -0.374 5.374 10 C 0.017 3.983 11 C -0.012 4.012 12 N -0.377 5.377 13 C 0.302 3.698 14 O -0.393 6.393 15 C -0.012 4.012 16 H 0.081 0.919 17 C -0.164 4.164 18 C -0.205 4.205 19 C -0.216 4.216 20 N -0.236 5.236 21 C -0.112 4.112 22 C -0.012 4.012 23 O -0.307 6.307 24 C -0.009 4.009 25 C -0.118 4.118 26 H 0.067 0.933 27 H 0.220 0.780 28 H 0.042 0.958 29 H 0.041 0.959 30 H 0.086 0.914 31 H 0.088 0.912 32 H 0.232 0.768 33 H 0.135 0.865 34 H 0.119 0.881 35 H 0.115 0.885 36 H 0.119 0.881 37 H 0.114 0.886 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.079 0.921 41 H 0.115 0.885 42 H 0.081 0.919 43 H 0.117 0.883 44 H 0.120 0.880 45 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 4.609 -24.893 -0.158 25.316 hybrid contribution 1.354 1.318 -0.259 1.907 sum 5.963 -23.575 -0.418 24.321 Atomic orbital electron populations 1.69667 1.05158 1.25888 1.57119 1.24782 0.95566 0.97832 1.02606 0.86150 0.78618 0.83587 0.77562 1.21610 1.21652 1.20697 1.19180 0.91020 0.83844 1.43540 0.91052 1.42182 1.05997 0.99544 1.89704 1.20745 0.93467 0.85706 0.98374 1.21583 0.95441 0.81579 1.02561 1.46084 1.10348 1.06010 1.75296 1.20169 0.88298 0.84677 0.76660 1.90719 1.13758 1.87120 1.47719 1.21168 0.93881 0.90374 0.95808 0.91878 1.22100 1.05330 0.98566 0.90381 1.23088 0.96226 1.03036 0.98193 1.23083 0.94416 1.00701 1.03352 1.61896 1.34615 1.02228 1.24833 1.22886 0.96191 0.90629 1.01515 1.22641 0.96213 0.95866 0.86474 1.87970 1.72432 1.38779 1.31484 1.22639 0.93840 0.82808 1.01617 1.22974 0.98900 1.00762 0.89174 0.93326 0.77998 0.95811 0.95899 0.91355 0.91167 0.76827 0.86521 0.88080 0.88460 0.88144 0.88602 0.93824 0.89206 0.92108 0.88452 0.91867 0.88308 0.88017 0.94213 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -28.13 13.06 55.49 0.72 -27.41 16 2 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 3 Si 0.91 22.19 29.55 -169.99 -5.02 17.16 16 4 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 5 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 6 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 7 C -0.24 -6.79 9.99 -15.06 -0.15 -6.94 16 8 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 9 N -0.73 -18.35 5.60 -59.91 -0.34 -18.68 16 10 C 0.15 2.79 6.37 -4.05 -0.03 2.76 16 11 C 0.11 1.87 5.79 -4.04 -0.02 1.84 16 12 N -0.72 -9.54 5.14 -60.30 -0.31 -9.85 16 13 C 0.52 7.13 3.70 -10.99 -0.04 7.09 16 14 O -0.52 -9.10 14.76 5.56 0.08 -9.01 16 15 C 0.10 1.07 2.27 -68.87 -0.16 0.92 16 16 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 17 C -0.15 -1.35 5.65 -90.62 -0.51 -1.86 16 18 C -0.17 -1.79 9.72 -26.73 -0.26 -2.05 16 19 C -0.18 -1.53 9.97 -26.73 -0.27 -1.80 16 20 N -0.51 -5.65 4.35 -227.73 -0.99 -6.64 16 21 C 0.02 0.13 5.44 -3.71 -0.02 0.11 16 22 C 0.07 0.55 7.01 37.21 0.26 0.81 16 23 O -0.39 -4.21 10.83 -35.23 -0.38 -4.60 16 24 C 0.07 0.71 7.01 37.21 0.26 0.97 16 25 C 0.01 0.11 5.22 -3.71 -0.02 0.09 16 26 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 27 H 0.39 10.31 7.67 -40.82 -0.31 9.99 16 28 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.02 0.43 8.14 -51.92 -0.42 0.01 16 30 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 31 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 32 H 0.40 4.24 7.31 -40.82 -0.30 3.94 16 33 H 0.12 0.91 6.12 -51.93 -0.32 0.59 16 34 H 0.10 1.37 6.33 -51.93 -0.33 1.04 16 35 H 0.10 0.91 8.14 -51.92 -0.42 0.49 16 36 H 0.10 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.10 0.84 6.53 -51.93 -0.34 0.50 16 38 H 0.04 0.37 8.14 -51.93 -0.42 -0.06 16 39 H 0.09 0.62 6.04 -51.93 -0.31 0.30 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.10 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 44 H 0.10 1.39 5.84 -51.93 -0.30 1.09 16 45 H 0.04 0.44 8.14 -51.93 -0.42 0.02 16 LS Contribution 356.09 15.07 5.37 5.37 Total: -1.00 -32.86 356.09 -9.17 -42.03 By element: Atomic # 1 Polarization: 17.38 SS G_CDS: -7.26 Total: 10.12 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -1.05 Total: 1.52 kcal Atomic # 7 Polarization: -61.67 SS G_CDS: -0.91 Total: -62.59 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.30 Total: -13.61 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.86 -9.17 -42.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151814666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.301 kcal (2) G-P(sol) polarization free energy of solvation -32.858 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.174 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.731 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds