Wall clock time and date at job start Tue Mar 31 2020 05:04:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31621 * 1 3 3 Si 1.86803 * 119.99708 * 2 1 4 4 H 1.48502 * 109.46916 * 269.99519 * 3 2 1 5 5 H 1.48496 * 109.47305 * 29.99375 * 3 2 1 6 6 H 1.48500 * 109.46914 * 149.99698 * 3 2 1 7 7 C 1.38810 * 119.99936 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99521 * 180.02562 * 7 2 1 9 9 N 1.36932 * 120.00285 * 0.02562 * 7 2 1 10 10 C 1.46493 * 120.00391 * 179.97438 * 9 7 2 11 11 C 1.52999 * 109.47531 * 179.97438 * 10 9 7 12 12 N 1.46499 * 109.47233 * 180.02562 * 11 10 9 13 13 C 1.34780 * 120.00192 * 180.02562 * 12 11 10 14 14 O 1.21278 * 119.99341 * 354.84592 * 13 12 11 15 15 C 1.50691 * 120.00121 * 175.12527 * 13 12 11 16 16 H 1.08995 * 109.47582 * 326.11082 * 15 13 12 17 17 C 1.53003 * 109.47199 * 86.11168 * 15 13 12 18 18 C 1.52997 * 117.49735 * 10.81819 * 17 15 13 19 19 C 1.53001 * 60.00355 * 252.50939 * 18 17 15 20 20 N 1.46898 * 109.47354 * 206.10921 * 15 13 12 21 21 C 1.47010 * 111.00353 * 178.05745 * 20 15 13 22 22 C 1.53098 * 109.25982 * 177.60669 * 21 20 15 23 23 O 1.43019 * 109.25525 * 56.84911 * 22 21 20 24 24 C 1.43014 * 113.73970 * 301.32701 * 23 22 21 25 25 C 1.47018 * 110.99939 * 54.42066 * 20 15 13 26 26 H 0.97002 * 120.00017 * 0.02562 * 1 2 3 27 27 H 0.97004 * 119.99987 * 359.97438 * 9 7 2 28 28 H 1.08998 * 109.47282 * 59.99205 * 10 9 7 29 29 H 1.09008 * 109.46885 * 299.99788 * 10 9 7 30 30 H 1.08998 * 109.47404 * 59.99381 * 11 10 9 31 31 H 1.09005 * 109.46726 * 299.99389 * 11 10 9 32 32 H 0.97004 * 119.99920 * 359.97438 * 12 11 10 33 33 H 1.08998 * 115.55232 * 156.52908 * 17 15 13 34 34 H 1.08995 * 117.49950 * 359.97438 * 18 17 15 35 35 H 1.09007 * 117.49961 * 145.02219 * 18 17 15 36 36 H 1.08997 * 117.50106 * 252.51240 * 19 18 17 37 37 H 1.09003 * 117.49499 * 107.48054 * 19 18 17 38 38 H 1.08996 * 109.50598 * 297.54342 * 21 20 15 39 39 H 1.09006 * 109.50630 * 57.67547 * 21 20 15 40 40 H 1.09002 * 109.50453 * 296.91596 * 22 21 20 41 41 H 1.09002 * 109.54505 * 176.80747 * 22 21 20 42 42 H 1.09003 * 109.51009 * 298.74159 * 24 23 22 43 43 H 1.08997 * 109.54252 * 178.62605 * 24 23 22 44 44 H 1.09004 * 109.50301 * 302.33064 * 25 20 15 45 45 H 1.08993 * 109.50395 * 62.41830 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6178 0.0000 4 1 2.4977 2.0464 -1.4001 5 1 1.4475 2.6527 0.6999 6 1 3.5477 1.4403 0.7001 7 6 2.0102 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0010 9 7 1.3256 -2.3880 0.0005 10 6 2.0581 -3.6567 0.0005 11 6 1.0639 -4.8197 0.0012 12 7 1.7964 -6.0884 0.0018 13 6 1.1226 -7.2557 0.0019 14 8 -0.0866 -7.2577 0.0959 15 6 1.8720 -8.5583 -0.1084 16 1 2.7482 -8.4210 -0.7420 17 6 2.3157 -9.0110 1.2842 18 6 1.7355 -8.2651 2.4876 19 6 3.1980 -8.0553 2.0900 20 7 0.9959 -9.5789 -0.6988 21 6 1.7091 -10.8537 -0.8646 22 6 0.7451 -11.9024 -1.4256 23 8 0.1942 -11.4262 -2.6565 24 6 -0.5081 -10.1866 -2.5315 25 6 0.4432 -9.1205 -1.9817 26 1 -0.4850 0.8401 -0.0004 27 1 0.3556 -2.3881 0.0005 28 1 2.6848 -3.7144 0.8904 29 1 2.6847 -3.7145 -0.8895 30 1 0.4368 -4.7621 -0.8885 31 1 0.4376 -4.7618 0.8915 32 1 2.7664 -6.0883 0.0014 33 1 2.4995 -10.0796 1.3949 34 1 1.0382 -7.4518 2.2872 35 1 1.5374 -8.8432 3.3903 36 1 3.9620 -8.4952 2.7309 37 1 3.4623 -7.1041 1.6278 38 1 2.5413 -10.7180 -1.5552 39 1 2.0877 -11.1873 0.1016 40 1 -0.0588 -12.0773 -0.7105 41 1 1.2827 -12.8338 -1.6037 42 1 -1.3485 -10.3116 -1.8486 43 1 -0.8767 -9.8762 -3.5092 44 1 -0.1022 -8.1889 -1.8309 45 1 1.2553 -8.9564 -2.6900 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001151814666.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:44 Heat of formation + Delta-G solvation = -50.238368 kcal Electronic energy + Delta-G solvation = -24676.907740 eV Core-core repulsion = 21116.098501 eV Total energy + Delta-G solvation = -3560.809239 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.80760 -40.05073 -38.16145 -37.32358 -36.16988 -35.44087 -33.17685 -32.18336 -30.61524 -29.16886 -26.36454 -25.56194 -25.11529 -23.42337 -23.23713 -22.36621 -21.62323 -20.63809 -19.33061 -18.23531 -18.11006 -17.32633 -16.94850 -16.80671 -16.42427 -16.16417 -16.06349 -15.92358 -15.54613 -15.20842 -15.12101 -14.99500 -14.71452 -14.54953 -13.83161 -13.32361 -13.11374 -13.06037 -12.97231 -12.69494 -12.55170 -12.45893 -12.34781 -12.22866 -12.10150 -11.87867 -11.65233 -11.34137 -11.21639 -11.00847 -10.80958 -10.62784 -10.17854 -9.42988 -9.08817 -7.98436 -5.30107 1.47450 1.49868 1.50005 1.58328 1.87188 2.50454 2.58879 2.88553 2.96918 3.35900 3.49582 3.71020 3.80914 3.90008 3.96035 3.97756 4.03624 4.11927 4.14201 4.17205 4.22111 4.28149 4.37581 4.39589 4.53694 4.60458 4.71021 4.76116 4.77353 4.86422 4.96196 4.98225 5.00618 5.09377 5.16219 5.20031 5.33151 5.47172 5.72585 5.87585 6.14505 6.22183 6.47602 7.16421 7.28481 7.99810 8.22836 9.25248 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.024271 B = 0.002886 C = 0.002688 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1153.386028 B = 9701.337543 C =10413.392862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.971 5.971 2 C -0.077 4.077 3 Si 0.979 3.021 4 H -0.286 1.286 5 H -0.296 1.296 6 H -0.265 1.265 7 C -0.248 4.248 8 H 0.083 0.917 9 N -0.747 5.747 10 C 0.150 3.850 11 C 0.131 3.869 12 N -0.713 5.713 13 C 0.518 3.482 14 O -0.561 6.561 15 C 0.104 3.896 16 H 0.084 0.916 17 C -0.137 4.137 18 C -0.192 4.192 19 C -0.161 4.161 20 N -0.526 5.526 21 C 0.017 3.983 22 C 0.060 3.940 23 O -0.401 6.401 24 C 0.071 3.929 25 C 0.013 3.987 26 H 0.252 0.748 27 H 0.374 0.626 28 H 0.037 0.963 29 H 0.037 0.963 30 H 0.053 0.947 31 H 0.051 0.949 32 H 0.413 0.587 33 H 0.141 0.859 34 H 0.065 0.935 35 H 0.107 0.893 36 H 0.125 0.875 37 H 0.093 0.907 38 H 0.050 0.950 39 H 0.111 0.889 40 H 0.057 0.943 41 H 0.124 0.876 42 H 0.054 0.946 43 H 0.110 0.890 44 H 0.073 0.927 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.616 -26.501 -0.228 27.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.807 3.193 4 H -0.213 1.213 5 H -0.223 1.223 6 H -0.190 1.190 7 C -0.380 4.380 8 H 0.101 0.899 9 N -0.390 5.390 10 C 0.023 3.977 11 C 0.006 3.994 12 N -0.367 5.367 13 C 0.305 3.695 14 O -0.438 6.438 15 C -0.007 4.007 16 H 0.102 0.898 17 C -0.156 4.156 18 C -0.229 4.229 19 C -0.198 4.198 20 N -0.253 5.253 21 C -0.110 4.110 22 C -0.017 4.017 23 O -0.320 6.320 24 C -0.006 4.006 25 C -0.115 4.115 26 H 0.061 0.939 27 H 0.205 0.795 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.250 0.750 33 H 0.158 0.842 34 H 0.083 0.917 35 H 0.126 0.874 36 H 0.143 0.857 37 H 0.112 0.888 38 H 0.068 0.932 39 H 0.129 0.871 40 H 0.075 0.925 41 H 0.142 0.858 42 H 0.072 0.928 43 H 0.128 0.872 44 H 0.092 0.908 45 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges 7.538 -26.575 -0.034 27.624 hybrid contribution 0.467 1.725 -0.282 1.810 sum 8.005 -24.850 -0.316 26.109 Atomic orbital electron populations 1.69838 1.06856 1.26321 1.59104 1.25676 0.96428 1.01483 1.03299 0.85062 0.77730 0.78963 0.77508 1.21258 1.22302 1.18987 1.19641 0.91719 0.84829 1.41791 0.89896 1.42421 1.05739 1.01090 1.89778 1.20830 0.93546 0.84083 0.99198 1.21113 0.94737 0.82571 1.00945 1.45881 1.10970 1.04747 1.75069 1.20804 0.87937 0.85626 0.75168 1.90702 1.15889 1.87720 1.49517 1.21189 0.93777 0.88444 0.97319 0.89839 1.22184 1.04846 0.99844 0.88690 1.23023 0.97273 1.02967 0.99600 1.23185 0.93512 1.00500 1.02653 1.61894 1.35582 1.03222 1.24556 1.22988 0.96034 0.89079 1.02873 1.22873 0.96358 0.96847 0.85623 1.87953 1.72552 1.38586 1.32917 1.22601 0.93306 0.82711 1.01960 1.22854 0.98964 0.99944 0.89738 0.93880 0.79488 0.94511 0.94518 0.92894 0.93072 0.74986 0.84182 0.91677 0.87433 0.85714 0.88828 0.93184 0.87055 0.92455 0.85791 0.92782 0.87230 0.90819 0.93868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -59.93 13.06 21.65 0.28 -59.65 16 2 C -0.08 -4.38 5.50 84.86 0.47 -3.92 16 3 Si 0.98 45.59 29.55 68.60 2.03 47.61 16 4 H -0.29 -13.04 7.11 99.48 0.71 -12.33 16 5 H -0.30 -13.97 7.11 99.48 0.71 -13.26 16 6 H -0.27 -11.51 7.11 99.48 0.71 -10.81 16 7 C -0.25 -13.69 9.99 84.03 0.84 -12.85 16 8 H 0.08 4.28 7.83 -2.91 -0.02 4.26 16 9 N -0.75 -37.91 5.60 -343.47 -1.92 -39.83 16 10 C 0.15 5.67 6.37 86.38 0.55 6.23 16 11 C 0.13 4.46 5.79 86.38 0.50 4.96 16 12 N -0.71 -18.43 5.14 -463.07 -2.38 -20.81 16 13 C 0.52 14.26 3.70 87.65 0.32 14.58 16 14 O -0.56 -20.50 14.76 -3.02 -0.04 -20.54 16 15 C 0.10 2.06 2.27 44.17 0.10 2.16 16 16 H 0.08 1.34 8.14 -2.39 -0.02 1.32 16 17 C -0.14 -2.18 5.65 -10.79 -0.06 -2.24 16 18 C -0.19 -3.86 9.72 30.59 0.30 -3.56 16 19 C -0.16 -2.31 9.97 30.60 0.31 -2.01 16 20 N -0.53 -10.95 4.35 -874.39 -3.80 -14.75 16 21 C 0.02 0.25 5.44 86.31 0.47 0.72 16 22 C 0.06 0.86 7.01 72.01 0.50 1.37 16 23 O -0.40 -8.15 10.83 -148.98 -1.61 -9.76 16 24 C 0.07 1.46 7.01 72.01 0.50 1.97 16 25 C 0.01 0.30 5.22 86.31 0.45 0.75 16 26 H 0.25 15.07 8.31 -92.71 -0.77 14.30 16 27 H 0.37 20.57 7.67 -92.70 -0.71 19.86 16 28 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 29 H 0.04 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.05 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.05 1.94 8.14 -2.38 -0.02 1.92 16 32 H 0.41 8.07 7.31 -92.70 -0.68 7.39 16 33 H 0.14 1.61 6.12 -2.39 -0.01 1.59 16 34 H 0.06 1.81 6.33 -2.39 -0.02 1.80 16 35 H 0.11 1.88 8.14 -2.38 -0.02 1.86 16 36 H 0.12 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.09 1.39 6.53 -2.39 -0.02 1.37 16 38 H 0.05 0.67 8.14 -2.39 -0.02 0.65 16 39 H 0.11 1.08 6.04 -2.38 -0.01 1.07 16 40 H 0.06 0.87 8.14 -2.39 -0.02 0.85 16 41 H 0.12 1.12 8.14 -2.39 -0.02 1.10 16 42 H 0.05 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.07 2.10 5.84 -2.38 -0.01 2.09 16 45 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 Total: -1.00 -72.18 356.09 -2.59 -74.78 By element: Atomic # 1 Polarization: 35.19 SS G_CDS: -0.39 Total: 34.80 kcal Atomic # 6 Polarization: 2.90 SS G_CDS: 5.25 Total: 8.16 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -7.83 Total: -135.04 kcal Atomic # 8 Polarization: -28.65 SS G_CDS: -1.66 Total: -30.31 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -72.18 -2.59 -74.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151814666.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.537 kcal (2) G-P(sol) polarization free energy of solvation -72.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.776 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds