Wall clock time and date at job start Tue Mar 31 2020 05:04:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31627 * 1 3 3 Si 1.86798 * 120.00181 * 2 1 4 4 H 1.48507 * 109.46665 * 270.00158 * 3 2 1 5 5 H 1.48498 * 109.47343 * 29.99528 * 3 2 1 6 6 H 1.48493 * 109.47171 * 150.00234 * 3 2 1 7 7 C 1.38808 * 119.99713 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00229 * 0.02562 * 7 2 1 9 9 N 1.36940 * 119.99792 * 180.02562 * 7 2 1 10 10 C 1.46507 * 119.99730 * 180.02562 * 9 7 2 11 11 C 1.53000 * 109.46555 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.46555 * 180.02562 * 11 10 9 13 13 C 1.34774 * 119.99595 * 179.97438 * 12 11 10 14 14 O 1.21281 * 120.00385 * 5.03140 * 13 12 11 15 15 C 1.50706 * 120.00053 * 185.02341 * 13 12 11 16 16 H 1.09003 * 109.47038 * 55.59884 * 15 13 12 17 17 C 1.53008 * 109.47078 * 295.60502 * 15 13 12 18 18 C 1.52990 * 117.49987 * 134.13976 * 17 15 13 19 19 C 1.52993 * 117.50005 * 65.51166 * 17 15 13 20 20 N 1.46894 * 109.47158 * 175.60287 * 15 13 12 21 21 C 1.47010 * 110.99943 * 294.99677 * 20 15 13 22 22 C 1.53099 * 109.25780 * 182.39198 * 21 20 15 23 23 O 1.43019 * 109.26335 * 303.15625 * 22 21 20 24 24 C 1.43023 * 113.73534 * 58.66614 * 23 22 21 25 25 C 1.47016 * 111.00383 * 58.63749 * 20 15 13 26 26 H 0.97001 * 119.99621 * 359.97438 * 1 2 3 27 27 H 0.96995 * 120.00185 * 359.97438 * 9 7 2 28 28 H 1.09003 * 109.46633 * 60.00212 * 10 9 7 29 29 H 1.09000 * 109.46916 * 300.00097 * 10 9 7 30 30 H 1.08991 * 109.47006 * 60.00490 * 11 10 9 31 31 H 1.09001 * 109.47255 * 299.99986 * 11 10 9 32 32 H 0.96999 * 120.00204 * 0.02562 * 12 11 10 33 33 H 1.09006 * 115.54371 * 279.84809 * 17 15 13 34 34 H 1.09000 * 117.50204 * 359.97438 * 18 17 15 35 35 H 1.08996 * 117.50452 * 145.02150 * 18 17 15 36 36 H 1.08995 * 117.50309 * 214.97775 * 19 17 15 37 37 H 1.09004 * 117.49876 * 359.97438 * 19 17 15 38 38 H 1.09002 * 109.50321 * 62.46322 * 21 20 15 39 39 H 1.08996 * 109.51164 * 302.33069 * 21 20 15 40 40 H 1.08996 * 109.50910 * 183.21597 * 22 21 20 41 41 H 1.09005 * 109.54256 * 63.11150 * 22 21 20 42 42 H 1.08997 * 109.50591 * 61.26881 * 24 23 22 43 43 H 1.09000 * 109.50099 * 181.40020 * 24 23 22 44 44 H 1.08998 * 109.50185 * 297.54016 * 25 20 15 45 45 H 1.09002 * 109.50505 * 57.66924 * 25 20 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6527 0.6999 6 1 3.5478 1.4401 0.7000 7 6 2.0103 -1.2022 0.0005 8 1 1.4702 -2.1374 0.0005 9 7 3.3797 -1.2022 0.0011 10 6 4.1121 -2.4710 0.0011 11 6 5.6163 -2.1914 0.0011 12 7 6.3488 -3.4602 0.0005 13 6 7.6965 -3.4602 -0.0002 14 8 8.3030 -2.4140 0.0919 15 6 8.4500 -4.7603 -0.1151 16 1 8.1285 -5.2885 -1.0127 17 6 8.1657 -5.6250 1.1148 18 6 7.8369 -7.1006 0.8802 19 6 6.7344 -6.1298 1.3079 20 7 9.8907 -4.4856 -0.1982 21 6 10.2177 -3.7567 -1.4322 22 6 11.7320 -3.5443 -1.5070 23 8 12.1695 -2.8497 -0.3358 24 6 11.8676 -3.5319 0.8845 25 6 10.3547 -3.7440 0.9834 26 1 -0.4850 0.8401 0.0004 27 1 3.8647 -0.3622 0.0007 28 1 3.8491 -3.0423 -0.8892 29 1 3.8484 -3.0427 0.8908 30 1 5.8796 -1.6199 0.8910 31 1 5.8797 -1.6198 -0.8889 32 1 5.8638 -4.3002 -0.0003 33 1 8.7351 -5.3718 2.0092 34 1 7.8227 -7.4554 -0.1503 35 1 8.1900 -7.8188 1.6201 36 1 6.3623 -6.2093 2.3292 37 1 5.9952 -5.8455 0.5590 38 1 9.7144 -2.7899 -1.4281 39 1 9.8883 -4.3355 -2.2951 40 1 11.9737 -2.9548 -2.3914 41 1 12.2333 -4.5105 -1.5656 42 1 12.3722 -4.4980 0.8958 43 1 12.2073 -2.9332 1.7296 44 1 9.8536 -2.7770 1.0261 45 1 10.1252 -4.3137 1.8839 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001151814684.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:49 Heat of formation + Delta-G solvation = -17.120956 kcal Electronic energy + Delta-G solvation = -24852.016569 eV Core-core repulsion = 21292.643409 eV Total energy + Delta-G solvation = -3559.373160 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.02018 -38.90918 -37.54312 -36.18528 -35.01498 -33.89478 -31.52326 -31.35535 -29.71683 -28.00812 -25.36238 -24.40930 -23.49395 -22.70272 -21.61249 -21.35757 -20.87142 -20.05492 -17.84517 -17.30954 -17.08224 -16.43180 -15.76540 -15.61193 -15.31860 -15.29287 -15.20474 -14.68999 -14.45947 -14.27293 -13.83264 -13.67136 -13.58609 -12.82995 -12.67764 -12.43563 -12.10100 -11.87645 -11.76283 -11.53056 -11.37617 -11.15103 -11.03291 -10.91160 -10.87990 -10.75388 -10.64246 -10.20343 -10.19140 -9.84108 -9.66680 -9.08719 -8.93843 -8.31319 -7.35007 -5.84043 -3.21755 2.44161 3.02047 3.26151 3.35125 3.38809 3.43012 3.68767 3.75731 4.20277 4.47891 4.53863 4.56024 4.68171 4.75296 4.77814 4.92218 4.94067 5.06940 5.19714 5.25137 5.27276 5.31339 5.35689 5.39659 5.41855 5.54170 5.58091 5.60171 5.65301 5.75425 5.78388 5.83284 5.88570 6.01066 6.35413 6.52098 6.54887 6.57600 6.65593 6.97277 7.43490 7.88897 8.12768 8.34003 9.11348 9.83728 10.01874 11.33768 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019300 B = 0.003323 C = 0.002958 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1450.424343 B = 8423.808447 C = 9462.294629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.008 3.992 3 Si 0.885 3.115 4 H -0.282 1.282 5 H -0.289 1.289 6 H -0.276 1.276 7 C -0.250 4.250 8 H 0.091 0.909 9 N -0.752 5.752 10 C 0.149 3.851 11 C 0.105 3.895 12 N -0.717 5.717 13 C 0.487 3.513 14 O -0.536 6.536 15 C 0.098 3.902 16 H 0.108 0.892 17 C -0.147 4.147 18 C -0.161 4.161 19 C -0.179 4.179 20 N -0.503 5.503 21 C 0.002 3.998 22 C 0.069 3.931 23 O -0.384 6.384 24 C 0.069 3.931 25 C -0.013 4.013 26 H 0.261 0.739 27 H 0.363 0.637 28 H 0.032 0.968 29 H 0.033 0.967 30 H 0.068 0.932 31 H 0.067 0.933 32 H 0.399 0.601 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.103 0.897 37 H 0.096 0.904 38 H 0.070 0.930 39 H 0.080 0.920 40 H 0.096 0.904 41 H 0.055 0.945 42 H 0.053 0.947 43 H 0.095 0.905 44 H 0.092 0.908 45 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.049 -15.118 0.281 27.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.578 5.578 2 C -0.188 4.188 3 Si 0.715 3.285 4 H -0.209 1.209 5 H -0.215 1.215 6 H -0.202 1.202 7 C -0.380 4.380 8 H 0.109 0.891 9 N -0.399 5.399 10 C 0.021 3.979 11 C -0.020 4.020 12 N -0.372 5.372 13 C 0.271 3.729 14 O -0.414 6.414 15 C -0.015 4.015 16 H 0.126 0.874 17 C -0.166 4.166 18 C -0.198 4.198 19 C -0.217 4.217 20 N -0.226 5.226 21 C -0.126 4.126 22 C -0.008 4.008 23 O -0.302 6.302 24 C -0.009 4.009 25 C -0.140 4.140 26 H 0.071 0.929 27 H 0.196 0.804 28 H 0.050 0.950 29 H 0.050 0.950 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.236 0.764 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.116 0.884 36 H 0.122 0.878 37 H 0.114 0.886 38 H 0.088 0.912 39 H 0.098 0.902 40 H 0.114 0.886 41 H 0.074 0.926 42 H 0.071 0.929 43 H 0.113 0.887 44 H 0.110 0.890 45 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 23.587 -14.709 0.301 27.799 hybrid contribution -0.453 1.292 0.032 1.370 sum 23.133 -13.417 0.333 26.745 Atomic orbital electron populations 1.69703 1.05110 1.26032 1.57005 1.24672 0.95264 0.97319 1.01589 0.86547 0.79275 0.84780 0.77948 1.20893 1.21517 1.20225 1.19004 0.80197 0.94884 1.43881 0.89082 1.42533 1.04165 1.01811 1.91348 1.20725 0.87643 0.90296 0.99219 1.21621 0.92603 0.85366 1.02361 1.46332 1.06391 1.10220 1.74209 1.21873 0.82797 0.91956 0.76248 1.90605 1.67252 1.33975 1.49573 1.21433 0.88273 0.92530 0.99256 0.87382 1.22131 0.99605 0.96263 0.98595 1.22997 1.02125 0.91771 1.02902 1.23109 0.91147 1.04005 1.03436 1.62628 1.11141 1.45829 1.03038 1.22971 0.97828 0.99342 0.92416 1.22581 0.92576 0.97114 0.88497 1.87992 1.80223 1.47823 1.14200 1.22612 0.93965 0.97078 0.87200 1.23285 0.96816 1.00736 0.93171 0.92896 0.80392 0.95012 0.94954 0.91321 0.91478 0.76376 0.86804 0.88388 0.88403 0.87821 0.88627 0.91231 0.90169 0.88623 0.92648 0.92889 0.88717 0.88978 0.90202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.08 13.97 55.49 0.78 -28.30 16 2 C 0.01 0.23 5.50 -17.43 -0.10 0.13 16 3 Si 0.88 22.16 27.74 -169.99 -4.71 17.45 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 6 H -0.28 -6.57 6.52 56.52 0.37 -6.20 16 7 C -0.25 -7.04 10.47 -15.06 -0.16 -7.19 16 8 H 0.09 2.71 8.06 -52.49 -0.42 2.29 16 9 N -0.75 -17.79 5.41 -59.90 -0.32 -18.11 16 10 C 0.15 2.74 6.37 -4.04 -0.03 2.71 16 11 C 0.10 1.66 5.79 -4.04 -0.02 1.64 16 12 N -0.72 -9.02 5.31 -60.29 -0.32 -9.34 16 13 C 0.49 6.30 6.47 -10.98 -0.07 6.23 16 14 O -0.54 -8.80 11.61 5.56 0.06 -8.73 16 15 C 0.10 0.95 2.40 -68.86 -0.16 0.79 16 16 H 0.11 0.92 7.93 -51.93 -0.41 0.50 16 17 C -0.15 -1.21 4.99 -90.62 -0.45 -1.66 16 18 C -0.16 -1.05 10.18 -26.74 -0.27 -1.32 16 19 C -0.18 -1.31 9.43 -26.73 -0.25 -1.56 16 20 N -0.50 -5.22 4.72 -227.72 -1.07 -6.30 16 21 C 0.00 0.02 5.32 -3.71 -0.02 0.01 16 22 C 0.07 0.68 7.01 37.21 0.26 0.94 16 23 O -0.38 -4.66 10.83 -35.23 -0.38 -5.04 16 24 C 0.07 0.69 7.01 37.20 0.26 0.95 16 25 C -0.01 -0.14 5.01 -3.71 -0.02 -0.16 16 26 H 0.26 7.74 8.31 -40.82 -0.34 7.40 16 27 H 0.36 8.48 5.53 -40.82 -0.23 8.26 16 28 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 31 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 32 H 0.40 4.08 5.44 -40.82 -0.22 3.86 16 33 H 0.11 0.98 6.14 -51.93 -0.32 0.66 16 34 H 0.10 0.58 8.08 -51.93 -0.42 0.16 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 36 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.10 0.67 5.81 -51.93 -0.30 0.37 16 38 H 0.07 0.95 6.00 -51.93 -0.31 0.63 16 39 H 0.08 0.71 8.13 -51.93 -0.42 0.28 16 40 H 0.10 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 43 H 0.09 0.82 8.14 -51.93 -0.42 0.40 16 44 H 0.09 1.31 5.15 -51.93 -0.27 1.04 16 45 H 0.08 0.76 6.03 -51.93 -0.31 0.45 16 LS Contribution 348.30 15.07 5.25 5.25 Total: -1.00 -33.56 348.30 -8.79 -42.35 By element: Atomic # 1 Polarization: 16.32 SS G_CDS: -7.03 Total: 9.28 kcal Atomic # 6 Polarization: 2.54 SS G_CDS: -1.03 Total: 1.50 kcal Atomic # 7 Polarization: -61.11 SS G_CDS: -0.94 Total: -62.06 kcal Atomic # 8 Polarization: -13.45 SS G_CDS: -0.32 Total: -13.77 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -4.71 Total: 17.45 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -33.56 -8.79 -42.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001151814684.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.226 kcal (2) G-P(sol) polarization free energy of solvation -33.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds