Wall clock time and date at job start Tue Mar 31 2020 04:50:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46505 * 109.46978 * 2 1 4 4 C 1.36938 * 119.99954 * 275.91141 * 3 2 1 5 5 H 1.08000 * 119.99579 * 34.07478 * 4 3 2 6 6 C 1.38806 * 120.00074 * 214.08189 * 4 3 2 7 7 N 1.31617 * 120.00382 * 17.04685 * 6 4 3 8 8 Si 1.86807 * 119.99939 * 197.04882 * 6 4 3 9 9 H 1.48506 * 109.46830 * 359.97438 * 8 6 4 10 10 H 1.48501 * 109.46871 * 119.99634 * 8 6 4 11 11 H 1.48498 * 109.47310 * 239.99690 * 8 6 4 12 12 C 1.46493 * 120.00185 * 95.91589 * 3 2 1 13 13 H 1.09002 * 109.47561 * 177.14259 * 12 3 2 14 14 C 1.53003 * 109.47452 * 57.14390 * 12 3 2 15 15 C 1.53000 * 109.46918 * 297.14496 * 12 3 2 16 16 N 1.46506 * 109.46925 * 304.99655 * 15 12 3 17 17 C 1.34778 * 119.99814 * 180.02562 * 16 15 12 18 18 O 1.21288 * 119.99976 * 0.02562 * 17 16 15 19 19 C 1.50693 * 119.99973 * 180.02562 * 17 16 15 20 20 N 1.46503 * 109.47279 * 179.97438 * 19 17 16 21 21 C 1.36594 * 127.12050 * 264.68008 * 20 19 17 22 22 N 1.30337 * 107.28227 * 179.89461 * 21 20 19 23 23 N 1.28537 * 109.99167 * 0.38482 * 22 21 20 24 24 C 1.31040 * 109.85973 * 359.75806 * 23 22 21 25 25 O 1.35530 * 126.44614 * 180.02562 * 24 23 22 26 26 H 1.09002 * 109.47400 * 300.00126 * 1 2 3 27 27 H 1.08997 * 109.46813 * 60.00126 * 1 2 3 28 28 H 1.08995 * 109.47004 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47400 * 239.99874 * 2 1 3 30 30 H 1.09001 * 109.47468 * 119.99628 * 2 1 3 31 31 H 0.97002 * 120.00245 * 180.02562 * 7 6 4 32 32 H 1.09005 * 109.46798 * 299.99955 * 14 12 3 33 33 H 1.08997 * 109.46990 * 59.99794 * 14 12 3 34 34 H 1.08992 * 109.47505 * 180.02562 * 14 12 3 35 35 H 1.08999 * 109.47408 * 65.00292 * 15 12 3 36 36 H 1.09008 * 109.47342 * 185.00395 * 15 12 3 37 37 H 0.96990 * 119.99726 * 0.02562 * 16 15 12 38 38 H 1.08999 * 109.47213 * 300.00238 * 19 17 16 39 39 H 1.09001 * 109.47339 * 59.99650 * 19 17 16 40 40 H 1.07995 * 126.35970 * 0.04645 * 21 20 19 41 41 H 0.96707 * 113.99821 * 269.99106 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1314 2.0675 -1.1796 5 1 1.4232 1.8925 -1.9761 6 6 3.1561 2.9878 -1.3517 7 7 4.1990 2.9694 -0.5490 8 14 3.0551 4.2527 -2.7226 9 1 1.7913 4.0629 -3.4791 10 1 3.0831 5.6181 -2.1394 11 1 4.2106 4.0823 -3.6396 12 6 2.3858 2.0283 1.2619 13 1 2.7713 3.0275 1.0592 14 6 3.4622 1.1995 1.9656 15 6 1.1519 2.1305 2.1608 16 7 0.0791 2.8212 1.4408 17 6 -1.1105 3.0275 2.0400 18 8 -1.2926 2.6416 3.1754 19 6 -2.2142 3.7374 1.2993 20 7 -3.3956 3.8354 2.1601 21 6 -4.4662 2.9876 2.1900 22 7 -5.2891 3.4349 3.0965 23 7 -4.8160 4.5044 3.6300 24 6 -3.6568 4.7948 3.0925 25 8 -2.8660 5.8501 3.4053 26 1 -0.3634 0.5139 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8934 -0.5139 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 4.9150 3.6127 -0.6690 32 1 3.0766 0.2003 2.1684 33 1 4.3412 1.1266 1.3252 34 1 3.7352 1.6806 2.9047 35 1 0.8190 1.1297 2.4362 36 1 1.4038 2.6902 3.0616 37 1 0.2249 3.1300 0.5331 38 1 -1.8814 4.7380 1.0232 39 1 -2.4664 3.1772 0.3990 40 1 -4.6041 2.1084 1.5782 41 1 -3.0434 6.6434 2.8815 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001152888363.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:50:04 Heat of formation + Delta-G solvation = 35.577347 kcal Electronic energy + Delta-G solvation = -25082.661913 eV Core-core repulsion = 21422.033579 eV Total energy + Delta-G solvation = -3660.628333 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -43.09393 -39.54012 -37.78619 -37.11801 -34.85715 -33.90054 -32.04388 -31.30084 -29.92533 -28.82393 -28.23655 -25.33439 -24.07656 -22.65130 -22.42919 -21.82266 -20.41897 -19.46042 -18.97264 -17.68981 -16.99156 -16.91115 -16.06091 -15.69713 -15.36795 -15.09248 -14.83921 -14.46753 -14.31137 -13.77943 -13.28233 -12.96126 -12.82839 -12.54069 -12.47040 -12.11269 -11.98723 -11.74908 -11.65563 -11.21918 -11.08946 -10.96134 -10.90355 -10.80613 -10.40555 -10.36200 -10.21247 -9.79884 -9.60804 -9.57435 -9.26457 -8.70535 -8.62350 -6.80456 -6.02326 -3.53176 1.50032 1.92029 2.64624 2.70074 3.17979 3.27449 3.29791 3.38601 3.62329 4.27852 4.35585 4.47552 4.74049 4.83110 5.12221 5.12963 5.25241 5.53563 5.73711 5.76106 5.90465 6.02626 6.10399 6.23152 6.33136 6.35035 6.39655 6.46200 6.53656 6.70234 6.77415 6.81566 7.00968 7.17867 7.32791 7.42032 7.62408 7.82100 8.29135 8.39226 8.55496 9.01429 9.62623 10.20592 11.03752 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.017641 B = 0.004384 C = 0.004064 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1586.788300 B = 6384.708972 C = 6888.902684 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.138 3.862 3 N -0.582 5.582 4 C -0.267 4.267 5 H 0.065 0.935 6 C 0.013 3.987 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.277 1.277 10 H -0.289 1.289 11 H -0.289 1.289 12 C 0.174 3.826 13 H 0.103 0.897 14 C -0.145 4.145 15 C 0.103 3.897 16 N -0.691 5.691 17 C 0.489 3.511 18 O -0.539 6.539 19 C 0.086 3.914 20 N -0.468 5.468 21 C 0.174 3.826 22 N -0.284 5.284 23 N -0.290 5.290 24 C 0.362 3.638 25 O -0.433 6.433 26 H 0.048 0.952 27 H 0.046 0.954 28 H 0.034 0.966 29 H 0.041 0.959 30 H 0.037 0.963 31 H 0.255 0.745 32 H 0.032 0.968 33 H 0.076 0.924 34 H 0.035 0.965 35 H 0.055 0.945 36 H 0.054 0.946 37 H 0.413 0.587 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.224 0.776 41 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.261 2.165 -0.194 9.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.012 3.988 3 N -0.304 5.304 4 C -0.397 4.397 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.202 1.202 10 H -0.215 1.215 11 H -0.216 1.216 12 C 0.067 3.933 13 H 0.121 0.879 14 C -0.204 4.204 15 C -0.022 4.022 16 N -0.342 5.342 17 C 0.271 3.729 18 O -0.417 6.417 19 C -0.041 4.041 20 N -0.170 5.170 21 C -0.113 4.113 22 N -0.125 5.125 23 N -0.141 5.141 24 C 0.057 3.943 25 O -0.232 6.232 26 H 0.067 0.933 27 H 0.066 0.934 28 H 0.053 0.947 29 H 0.060 0.940 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.051 0.949 33 H 0.095 0.905 34 H 0.054 0.946 35 H 0.074 0.926 36 H 0.072 0.928 37 H 0.250 0.750 38 H 0.141 0.859 39 H 0.149 0.851 40 H 0.240 0.760 41 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -10.054 1.833 1.929 10.400 hybrid contribution 1.396 1.024 -2.396 2.956 sum -8.658 2.857 -0.467 9.129 Atomic orbital electron populations 1.22417 1.00148 0.99099 1.01136 1.20783 0.91617 0.87520 0.98891 1.43898 1.75950 1.08257 1.02272 1.19113 1.08001 1.18822 0.93733 0.91762 1.25198 0.94457 1.01366 0.97729 1.70005 1.07219 1.36173 1.39579 0.86357 0.77757 0.81482 0.81902 1.20180 1.21514 1.21587 1.20534 0.88934 0.99575 0.84304 0.87936 1.22000 1.01029 0.98159 0.99196 1.22256 0.88896 0.95658 0.95428 1.45877 1.11790 1.57524 1.19055 1.20394 0.84049 0.81080 0.87351 1.90771 1.81422 1.51446 1.18023 1.21778 0.83953 1.04997 0.93372 1.46459 1.17553 1.22665 1.30353 1.26343 0.84488 0.98609 1.01842 1.74190 1.24700 1.05804 1.07828 1.74579 1.05841 1.11075 1.22575 1.22082 0.91194 0.89622 0.91374 1.84987 1.56543 1.20237 1.61422 0.93345 0.93442 0.94718 0.94024 0.94417 0.93457 0.94929 0.90526 0.94631 0.92648 0.92806 0.74964 0.85933 0.85133 0.75953 0.73999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.68 9.95 37.16 0.37 -2.31 16 2 C 0.14 2.55 5.75 -4.04 -0.02 2.53 16 3 N -0.58 -11.91 1.88 -165.66 -0.31 -12.22 16 4 C -0.27 -6.05 9.07 -15.06 -0.14 -6.18 16 5 H 0.06 1.46 7.89 -52.49 -0.41 1.05 16 6 C 0.01 0.31 4.86 -17.43 -0.08 0.23 16 7 N -0.89 -22.21 10.90 55.49 0.61 -21.61 16 8 Si 0.90 18.74 29.59 -169.99 -5.03 13.71 16 9 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 10 H -0.29 -6.11 7.11 56.52 0.40 -5.71 16 11 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 12 C 0.17 3.42 1.95 -67.93 -0.13 3.29 16 13 H 0.10 2.31 5.94 -51.93 -0.31 2.01 16 14 C -0.14 -2.77 9.05 37.16 0.34 -2.43 16 15 C 0.10 1.81 4.36 -4.04 -0.02 1.79 16 16 N -0.69 -10.65 4.28 -60.29 -0.26 -10.91 16 17 C 0.49 7.27 7.85 -10.99 -0.09 7.18 16 18 O -0.54 -10.47 16.43 5.55 0.09 -10.38 16 19 C 0.09 0.87 6.69 -5.20 -0.03 0.83 16 20 N -0.47 -5.71 2.29 -121.04 -0.28 -5.99 16 21 C 0.17 2.08 12.79 -89.08 -1.14 0.95 16 22 N -0.28 -4.35 12.18 29.87 0.36 -3.99 16 23 N -0.29 -4.72 12.22 29.65 0.36 -4.35 16 24 C 0.36 5.09 9.22 -88.75 -0.82 4.27 16 25 O -0.43 -5.09 13.62 -18.28 -0.25 -5.33 16 26 H 0.05 0.78 5.32 -51.93 -0.28 0.51 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 29 H 0.04 0.81 8.09 -51.93 -0.42 0.39 16 30 H 0.04 0.68 6.29 -51.93 -0.33 0.36 16 31 H 0.26 6.31 8.31 -40.82 -0.34 5.97 16 32 H 0.03 0.58 6.56 -51.93 -0.34 0.24 16 33 H 0.08 1.67 7.69 -51.93 -0.40 1.27 16 34 H 0.03 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.06 1.01 6.98 -51.93 -0.36 0.65 16 36 H 0.05 0.97 8.14 -51.92 -0.42 0.54 16 37 H 0.41 6.29 7.73 -40.82 -0.32 5.97 16 38 H 0.12 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 40 H 0.22 1.66 8.06 -52.49 -0.42 1.24 16 41 H 0.40 2.19 9.06 45.56 0.41 2.60 16 LS Contribution 343.03 15.07 5.17 5.17 Total: -1.00 -32.13 343.03 -6.15 -38.27 By element: Atomic # 1 Polarization: 12.32 SS G_CDS: -4.84 Total: 7.48 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -1.77 Total: 10.15 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.48 Total: -59.07 kcal Atomic # 8 Polarization: -15.55 SS G_CDS: -0.16 Total: -15.71 kcal Atomic # 14 Polarization: 18.74 SS G_CDS: -5.03 Total: 13.71 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -32.13 -6.15 -38.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001152888363.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.851 kcal (2) G-P(sol) polarization free energy of solvation -32.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.723 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.145 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.274 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.577 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds