Wall clock time and date at job start Tue Mar 31 2020 05:13:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99877 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00391 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.46788 * 299.98995 * 16 14 13 18 18 C 1.52996 * 109.47400 * 59.99530 * 16 14 13 19 19 C 1.52996 * 109.47334 * 180.02562 * 18 16 14 20 20 C 1.53005 * 109.46949 * 300.00119 * 19 18 16 21 21 C 1.52996 * 109.47200 * 59.99799 * 20 19 18 22 22 H 1.09000 * 109.46855 * 60.00320 * 21 20 19 23 23 C 1.50700 * 109.47107 * 180.02562 * 21 20 19 24 24 N 1.34777 * 120.00075 * 300.00290 * 23 21 20 25 25 O 1.21283 * 120.00275 * 120.00190 * 23 21 20 26 26 C 1.52996 * 109.47334 * 299.99965 * 21 20 19 27 27 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 29 29 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 30 30 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 31 31 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 32 32 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 33 33 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 34 34 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 35 35 H 0.96992 * 119.99973 * 359.97438 * 13 12 11 36 36 H 1.09005 * 109.47173 * 300.00424 * 18 16 14 37 37 H 1.09000 * 109.46855 * 59.99906 * 18 16 14 38 38 H 1.08998 * 109.47408 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.47190 * 59.99633 * 19 18 16 40 40 H 1.09002 * 109.46630 * 299.99484 * 20 19 18 41 41 H 1.08997 * 109.46627 * 180.02562 * 20 19 18 42 42 H 0.97000 * 119.99549 * 359.97438 * 24 23 21 43 43 H 0.96991 * 120.00395 * 179.97438 * 24 23 21 44 44 H 1.08994 * 109.47190 * 300.00367 * 26 21 20 45 45 H 1.08998 * 109.47408 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 6 5.6163 -2.1913 0.0096 12 6 6.3812 -3.5163 0.0162 13 7 7.8216 -3.2486 0.0216 14 6 8.6974 -4.2730 0.0274 15 8 8.2932 -5.4165 0.0285 16 6 10.1791 -3.9976 0.0336 17 1 10.4464 -3.4277 -0.8563 18 6 10.5431 -3.1930 1.2830 19 6 12.0472 -2.9129 1.2889 20 6 12.8126 -4.2377 1.2944 21 6 12.4486 -5.0423 0.0451 22 1 12.7156 -4.4722 -0.8447 23 6 13.2020 -6.3474 0.0508 24 7 14.5498 -6.3475 0.0570 25 8 12.5956 -7.3978 0.0500 26 6 10.9445 -5.3224 0.0391 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 3.8454 -3.0405 0.8949 30 1 3.8521 -3.0445 -0.8851 31 1 5.8829 -1.6217 -0.8806 32 1 5.8763 -1.6177 0.8994 33 1 6.1146 -4.0855 0.9066 34 1 6.1214 -4.0903 -0.8734 35 1 8.1449 -2.3341 0.0204 36 1 9.9981 -2.2490 1.2788 37 1 10.2757 -3.7630 2.1728 38 1 12.3065 -2.3394 2.1788 39 1 12.3141 -2.3429 0.3991 40 1 12.5457 -4.8078 2.1844 41 1 13.8841 -4.0381 1.2992 42 1 15.0348 -5.5074 0.0573 43 1 15.0348 -7.1874 0.0611 44 1 10.6775 -5.8924 0.9289 45 1 10.6852 -5.8960 -0.8507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001167504439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:24 Heat of formation + Delta-G solvation = -96.308140 kcal Electronic energy + Delta-G solvation = -23540.465946 eV Core-core repulsion = 19977.658972 eV Total energy + Delta-G solvation = -3562.806974 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.81953 -39.67117 -37.55866 -36.14108 -34.48318 -34.16519 -32.26757 -31.45405 -31.27990 -29.85359 -25.75011 -24.48883 -23.61175 -22.11600 -21.49802 -21.25059 -20.25291 -19.93747 -18.15810 -17.54492 -17.12743 -16.68581 -16.02303 -15.82153 -15.58071 -15.14688 -14.85327 -14.59075 -14.31609 -14.02748 -13.85289 -13.70238 -13.16477 -12.92988 -12.84364 -12.72939 -12.42490 -12.01415 -11.85562 -11.61549 -11.22514 -11.15534 -11.14257 -11.04217 -10.84341 -10.77443 -10.71144 -10.17890 -10.17109 -10.10716 -9.74659 -9.59630 -9.08553 -8.91019 -7.25096 -5.77368 -3.13513 2.24966 2.56810 2.95740 3.20527 3.35182 3.37467 3.43482 4.12021 4.18546 4.21900 4.55201 4.57674 4.65443 4.73789 4.79753 4.82241 4.95071 4.96870 5.08929 5.14791 5.21167 5.45882 5.49814 5.51066 5.52429 5.53195 5.64448 5.72133 5.81305 5.90028 5.93348 5.97208 6.09131 6.14764 6.34197 6.41106 6.68691 6.71720 6.87602 7.42836 7.86176 7.98911 8.16767 8.41387 9.20124 9.92136 10.11701 11.41004 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.036929 B = 0.002191 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.028337 B =12775.368413 C =13372.056133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.887 3.113 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.245 4.245 8 H 0.091 0.909 9 N -0.757 5.757 10 C 0.160 3.840 11 C -0.141 4.141 12 C 0.121 3.879 13 N -0.729 5.729 14 C 0.513 3.487 15 O -0.536 6.536 16 C -0.106 4.106 17 H 0.098 0.902 18 C -0.114 4.114 19 C -0.115 4.115 20 C -0.112 4.112 21 C -0.108 4.108 22 H 0.099 0.901 23 C 0.519 3.481 24 N -0.858 5.858 25 O -0.535 6.535 26 C -0.080 4.080 27 H 0.260 0.740 28 H 0.360 0.640 29 H 0.030 0.970 30 H 0.031 0.969 31 H 0.067 0.933 32 H 0.067 0.933 33 H 0.069 0.931 34 H 0.070 0.930 35 H 0.399 0.601 36 H 0.071 0.929 37 H 0.071 0.929 38 H 0.072 0.928 39 H 0.068 0.932 40 H 0.071 0.929 41 H 0.068 0.932 42 H 0.400 0.600 43 H 0.400 0.600 44 H 0.079 0.921 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 34.993 -5.355 1.219 35.421 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.193 4.193 3 Si 0.717 3.283 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.375 4.375 8 H 0.109 0.891 9 N -0.402 5.402 10 C 0.032 3.968 11 C -0.179 4.179 12 C -0.002 4.002 13 N -0.380 5.380 14 C 0.299 3.701 15 O -0.412 6.412 16 C -0.128 4.128 17 H 0.116 0.884 18 C -0.152 4.152 19 C -0.153 4.153 20 C -0.150 4.150 21 C -0.129 4.129 22 H 0.117 0.883 23 C 0.304 3.696 24 N -0.422 5.422 25 O -0.410 6.410 26 C -0.118 4.118 27 H 0.070 0.930 28 H 0.193 0.807 29 H 0.048 0.952 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.086 0.914 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.233 0.767 36 H 0.090 0.910 37 H 0.090 0.910 38 H 0.090 0.910 39 H 0.087 0.913 40 H 0.089 0.911 41 H 0.086 0.914 42 H 0.228 0.772 43 H 0.231 0.769 44 H 0.098 0.902 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 33.856 -6.866 1.218 34.566 hybrid contribution 1.145 1.835 -0.049 2.163 sum 35.000 -5.032 1.169 35.379 Atomic orbital electron populations 1.69701 1.05095 1.25831 1.57527 1.24695 0.95282 0.97265 1.02061 0.86507 0.79125 0.84906 0.77719 1.21081 1.21710 1.20418 1.19080 0.80587 0.94842 1.43023 0.89139 1.42686 1.04109 1.02146 1.91302 1.20506 0.87690 0.89498 0.99100 1.21987 0.97172 0.96259 1.02492 1.21339 0.78388 0.97798 1.02701 1.46089 1.07080 1.09318 1.75548 1.20552 0.88332 0.85156 0.76053 1.90739 1.80240 1.21341 1.48864 1.21350 0.91917 0.98862 1.00635 0.88432 1.21579 0.96550 0.99927 0.97166 1.21513 0.94437 0.96578 1.02750 1.21570 1.00086 0.96349 0.96990 1.21372 0.96820 0.93926 1.00817 0.88259 1.20681 0.82539 0.91518 0.74850 1.43915 1.07345 1.12390 1.78574 1.90793 1.68107 1.33691 1.48454 1.21136 0.90270 0.95232 1.05182 0.93039 0.80716 0.95219 0.95149 0.91384 0.91405 0.91223 0.91210 0.76705 0.91010 0.90995 0.90953 0.91318 0.91058 0.91372 0.77151 0.76922 0.90222 0.90309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.53 13.97 55.49 0.78 -28.76 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.89 21.98 27.73 -169.99 -4.71 17.26 16 4 H -0.28 -6.96 7.11 56.52 0.40 -6.56 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.28 -6.40 6.52 56.52 0.37 -6.03 16 7 C -0.25 -7.04 10.47 -15.06 -0.16 -7.20 16 8 H 0.09 2.78 8.06 -52.49 -0.42 2.36 16 9 N -0.76 -18.01 5.41 -59.90 -0.32 -18.34 16 10 C 0.16 3.04 6.26 -4.04 -0.03 3.02 16 11 C -0.14 -1.97 5.44 -26.73 -0.15 -2.12 16 12 C 0.12 1.57 5.67 -4.04 -0.02 1.55 16 13 N -0.73 -7.71 5.45 -60.29 -0.33 -8.03 16 14 C 0.51 6.09 7.16 -10.98 -0.08 6.01 16 15 O -0.54 -8.86 15.98 5.55 0.09 -8.78 16 16 C -0.11 -0.83 2.52 -91.77 -0.23 -1.06 16 17 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 18 C -0.11 -0.68 5.10 -26.74 -0.14 -0.81 16 19 C -0.12 -0.44 5.92 -26.73 -0.16 -0.60 16 20 C -0.11 -0.47 5.10 -26.73 -0.14 -0.61 16 21 C -0.11 -0.65 2.53 -91.78 -0.23 -0.88 16 22 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 23 C 0.52 4.20 7.43 -10.98 -0.08 4.12 16 24 N -0.86 -3.35 8.77 31.22 0.27 -3.08 16 25 O -0.54 -7.16 16.82 5.55 0.09 -7.06 16 26 C -0.08 -0.75 3.06 -26.73 -0.08 -0.83 16 27 H 0.26 7.79 8.31 -40.82 -0.34 7.45 16 28 H 0.36 8.22 5.53 -40.82 -0.23 8.00 16 29 H 0.03 0.58 8.14 -51.92 -0.42 0.16 16 30 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.07 0.91 8.14 -51.93 -0.42 0.49 16 33 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 3.09 7.89 -40.82 -0.32 2.77 16 36 H 0.07 0.36 7.57 -51.93 -0.39 -0.03 16 37 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 39 H 0.07 0.20 8.14 -51.93 -0.42 -0.23 16 40 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 41 H 0.07 0.14 7.57 -51.93 -0.39 -0.25 16 42 H 0.40 0.30 8.25 -40.82 -0.34 -0.03 16 43 H 0.40 1.36 8.93 -40.82 -0.36 1.00 16 44 H 0.08 0.94 8.06 -51.93 -0.42 0.52 16 45 H 0.08 0.91 8.06 -51.93 -0.42 0.49 16 LS Contribution 362.95 15.07 5.47 5.47 Total: -1.00 -38.01 362.95 -7.79 -45.80 By element: Atomic # 1 Polarization: 12.48 SS G_CDS: -7.54 Total: 4.95 kcal Atomic # 6 Polarization: 2.15 SS G_CDS: -1.58 Total: 0.57 kcal Atomic # 7 Polarization: -58.60 SS G_CDS: 0.40 Total: -58.21 kcal Atomic # 8 Polarization: -16.02 SS G_CDS: 0.18 Total: -15.84 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.71 Total: 17.26 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -38.01 -7.79 -45.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167504439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.507 kcal (2) G-P(sol) polarization free energy of solvation -38.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.522 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.786 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds