Wall clock time and date at job start Tue Mar 31 2020 05:13:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31612 * 1 3 3 Si 1.86800 * 120.00194 * 2 1 4 4 H 1.48500 * 109.47517 * 270.00723 * 3 2 1 5 5 H 1.48502 * 109.46736 * 30.00497 * 3 2 1 6 6 H 1.48496 * 109.47375 * 150.00192 * 3 2 1 7 7 C 1.38810 * 120.00054 * 180.02562 * 2 1 3 8 8 H 1.08001 * 120.00204 * 359.97438 * 7 2 1 9 9 N 1.36939 * 120.00095 * 179.97438 * 7 2 1 10 10 C 1.46499 * 119.99933 * 179.71972 * 9 7 2 11 11 C 1.53004 * 109.47198 * 180.27608 * 10 9 7 12 12 C 1.52997 * 109.47000 * 179.97438 * 11 10 9 13 13 N 1.46506 * 109.46748 * 180.02562 * 12 11 10 14 14 C 1.34775 * 119.99877 * 180.02562 * 13 12 11 15 15 O 1.21284 * 120.00391 * 359.97438 * 14 13 12 16 16 C 1.50703 * 120.00069 * 180.02562 * 14 13 12 17 17 H 1.09002 * 109.46788 * 299.98995 * 16 14 13 18 18 C 1.52996 * 109.47400 * 59.99530 * 16 14 13 19 19 C 1.52996 * 109.47334 * 180.02562 * 18 16 14 20 20 C 1.53005 * 109.46949 * 300.00119 * 19 18 16 21 21 C 1.52996 * 109.47200 * 59.99799 * 20 19 18 22 22 H 1.09000 * 109.46855 * 60.00320 * 21 20 19 23 23 C 1.50700 * 109.47107 * 180.02562 * 21 20 19 24 24 N 1.34777 * 120.00075 * 300.00290 * 23 21 20 25 25 O 1.21283 * 120.00275 * 120.00190 * 23 21 20 26 26 C 1.52996 * 109.47334 * 299.99965 * 21 20 19 27 27 H 0.96998 * 120.00381 * 359.97438 * 1 2 3 28 28 H 0.97001 * 120.00218 * 0.02562 * 9 7 2 29 29 H 1.09009 * 109.47454 * 300.27377 * 10 9 7 30 30 H 1.08998 * 109.47492 * 60.27672 * 10 9 7 31 31 H 1.08995 * 109.46638 * 300.00121 * 11 10 9 32 32 H 1.09006 * 109.47139 * 60.00254 * 11 10 9 33 33 H 1.08995 * 109.47672 * 299.99669 * 12 11 10 34 34 H 1.09007 * 109.47288 * 60.00489 * 12 11 10 35 35 H 0.96992 * 119.99973 * 359.97438 * 13 12 11 36 36 H 1.09005 * 109.47173 * 300.00424 * 18 16 14 37 37 H 1.09000 * 109.46855 * 59.99906 * 18 16 14 38 38 H 1.08998 * 109.47408 * 179.97438 * 19 18 16 39 39 H 1.08994 * 109.47190 * 59.99633 * 19 18 16 40 40 H 1.09002 * 109.46630 * 299.99484 * 20 19 18 41 41 H 1.08997 * 109.46627 * 180.02562 * 20 19 18 42 42 H 0.97000 * 119.99549 * 359.97438 * 24 23 21 43 43 H 0.96991 * 120.00395 * 179.97438 * 24 23 21 44 44 H 1.08994 * 109.47190 * 300.00367 * 26 21 20 45 45 H 1.08998 * 109.47408 * 180.02562 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 2.4976 2.0466 -1.4000 5 1 1.4476 2.6526 0.7002 6 1 3.5477 1.4402 0.7000 7 6 2.0102 -1.2021 -0.0005 8 1 1.4702 -2.1375 -0.0005 9 7 3.3796 -1.2021 -0.0011 10 6 4.1120 -2.4708 0.0046 11 6 5.6163 -2.1913 0.0096 12 6 6.3812 -3.5163 0.0162 13 7 7.8216 -3.2486 0.0216 14 6 8.6974 -4.2730 0.0274 15 8 8.2932 -5.4165 0.0285 16 6 10.1791 -3.9976 0.0336 17 1 10.4464 -3.4277 -0.8563 18 6 10.5431 -3.1930 1.2830 19 6 12.0472 -2.9129 1.2889 20 6 12.8126 -4.2377 1.2944 21 6 12.4486 -5.0423 0.0451 22 1 12.7156 -4.4722 -0.8447 23 6 13.2020 -6.3474 0.0508 24 7 14.5498 -6.3475 0.0570 25 8 12.5956 -7.3978 0.0500 26 6 10.9445 -5.3224 0.0391 27 1 -0.4850 0.8400 0.0004 28 1 3.8646 -0.3621 -0.0007 29 1 3.8454 -3.0405 0.8949 30 1 3.8521 -3.0445 -0.8851 31 1 5.8829 -1.6217 -0.8806 32 1 5.8763 -1.6177 0.8994 33 1 6.1146 -4.0855 0.9066 34 1 6.1214 -4.0903 -0.8734 35 1 8.1449 -2.3341 0.0204 36 1 9.9981 -2.2490 1.2788 37 1 10.2757 -3.7630 2.1728 38 1 12.3065 -2.3394 2.1788 39 1 12.3141 -2.3429 0.3991 40 1 12.5457 -4.8078 2.1844 41 1 13.8841 -4.0381 1.2992 42 1 15.0348 -5.5074 0.0573 43 1 15.0348 -7.1874 0.0611 44 1 10.6775 -5.8924 0.9289 45 1 10.6852 -5.8960 -0.8507 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001167504439.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:13:23 Heat of formation + Delta-G solvation = -128.174567 kcal Electronic energy + Delta-G solvation = -23541.847778 eV Core-core repulsion = 19977.658972 eV Total energy + Delta-G solvation = -3564.188806 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.52755 -40.49937 -38.24203 -37.56042 -35.97391 -34.74797 -33.91821 -32.48890 -31.78271 -31.24640 -27.23028 -25.05011 -24.71798 -23.51961 -22.69024 -22.02349 -21.03095 -20.59172 -19.65296 -18.68395 -17.75876 -17.47880 -17.07743 -16.83632 -16.47568 -16.21456 -15.89625 -15.69711 -15.37899 -15.01075 -14.83596 -14.73586 -14.62483 -14.00637 -13.80430 -13.77858 -13.40966 -13.23848 -12.87293 -12.55063 -12.50696 -12.34962 -12.17773 -12.08791 -12.00409 -11.80776 -11.66947 -11.62787 -11.36275 -10.98215 -10.79985 -10.67883 -10.62164 -10.09979 -9.32505 -8.03298 -5.38776 1.38529 1.44624 1.51965 1.64212 1.65386 2.14112 2.49497 2.65089 3.27531 3.51287 3.57883 3.72630 3.75013 3.94595 4.06965 4.16435 4.19936 4.24367 4.34344 4.35491 4.43657 4.46115 4.60077 4.69096 4.70518 4.71766 4.88949 5.08053 5.10899 5.15002 5.23226 5.25147 5.27911 5.28129 5.34675 5.44479 5.52943 5.74044 5.92204 6.19970 6.50136 6.58101 7.06871 7.28349 7.39093 7.80868 8.02831 9.18182 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.036929 B = 0.002191 C = 0.002093 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.028337 B =12775.368413 C =13372.056133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.985 5.985 2 C -0.069 4.069 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.296 1.296 6 H -0.244 1.244 7 C -0.244 4.244 8 H 0.051 0.949 9 N -0.757 5.757 10 C 0.153 3.847 11 C -0.120 4.120 12 C 0.129 3.871 13 N -0.713 5.713 14 C 0.507 3.493 15 O -0.592 6.592 16 C -0.094 4.094 17 H 0.132 0.868 18 C -0.113 4.113 19 C -0.109 4.109 20 C -0.109 4.109 21 C -0.099 4.099 22 H 0.133 0.867 23 C 0.513 3.487 24 N -0.835 5.835 25 O -0.601 6.601 26 C -0.078 4.078 27 H 0.259 0.741 28 H 0.370 0.630 29 H 0.022 0.978 30 H 0.023 0.977 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.056 0.944 34 H 0.057 0.943 35 H 0.418 0.582 36 H 0.090 0.910 37 H 0.050 0.950 38 H 0.085 0.915 39 H 0.093 0.907 40 H 0.050 0.950 41 H 0.100 0.900 42 H 0.420 0.580 43 H 0.405 0.595 44 H 0.041 0.959 45 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 39.279 -1.927 1.051 39.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.635 5.635 2 C -0.260 4.260 3 Si 0.791 3.209 4 H -0.201 1.201 5 H -0.223 1.223 6 H -0.168 1.168 7 C -0.375 4.375 8 H 0.069 0.931 9 N -0.403 5.403 10 C 0.026 3.974 11 C -0.158 4.158 12 C 0.004 3.996 13 N -0.366 5.366 14 C 0.295 3.705 15 O -0.473 6.473 16 C -0.115 4.115 17 H 0.150 0.850 18 C -0.151 4.151 19 C -0.146 4.146 20 C -0.147 4.147 21 C -0.120 4.120 22 H 0.151 0.849 23 C 0.299 3.701 24 N -0.399 5.399 25 O -0.482 6.482 26 C -0.116 4.116 27 H 0.068 0.932 28 H 0.203 0.797 29 H 0.040 0.960 30 H 0.041 0.959 31 H 0.104 0.896 32 H 0.102 0.898 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.255 0.745 36 H 0.108 0.892 37 H 0.069 0.931 38 H 0.104 0.896 39 H 0.112 0.888 40 H 0.069 0.931 41 H 0.119 0.881 42 H 0.252 0.748 43 H 0.236 0.764 44 H 0.060 0.940 45 H 0.065 0.935 Dipole moment (debyes) X Y Z Total from point charges 38.258 -3.391 1.056 38.422 hybrid contribution -0.221 0.618 0.002 0.656 sum 38.037 -2.773 1.058 38.152 Atomic orbital electron populations 1.69909 1.07402 1.26920 1.59305 1.25670 0.96296 1.01874 1.02200 0.85262 0.78753 0.78566 0.78286 1.20114 1.22285 1.16816 1.19044 0.82898 0.93499 1.42065 0.93137 1.42624 1.02409 1.04170 1.91107 1.20663 0.90874 0.87577 0.98290 1.21744 0.93119 0.96800 1.04100 1.21067 0.79907 0.97044 1.01569 1.45893 1.05794 1.10221 1.74682 1.21380 0.90186 0.84350 0.74578 1.90722 1.81366 1.23746 1.51429 1.21368 0.88287 0.98544 1.03325 0.85022 1.21627 0.98849 0.99783 0.94865 1.21524 0.92124 0.96346 1.04623 1.21607 1.02207 0.96048 0.94838 1.21361 0.93786 0.93417 1.03412 0.84930 1.21135 0.83651 0.91411 0.73948 1.43732 1.06055 1.13775 1.76311 1.90773 1.69638 1.35964 1.51826 1.21017 0.93382 0.95438 1.01807 0.93242 0.79657 0.96028 0.95872 0.89631 0.89791 0.92607 0.92466 0.74468 0.89190 0.93127 0.89623 0.88813 0.93074 0.88113 0.74833 0.76446 0.94020 0.93531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.99 -63.80 13.97 21.65 0.30 -63.50 16 2 C -0.07 -4.10 5.50 84.86 0.47 -3.64 16 3 Si 0.97 44.45 27.73 68.60 1.90 46.36 16 4 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 5 H -0.30 -13.85 7.11 99.48 0.71 -13.14 16 6 H -0.24 -9.78 6.52 99.48 0.65 -9.13 16 7 C -0.24 -14.21 10.47 84.03 0.88 -13.33 16 8 H 0.05 3.26 8.06 -2.91 -0.02 3.24 16 9 N -0.76 -35.06 5.41 -343.44 -1.86 -36.92 16 10 C 0.15 5.72 6.26 86.38 0.54 6.26 16 11 C -0.12 -3.04 5.44 30.59 0.17 -2.88 16 12 C 0.13 3.22 5.67 86.38 0.49 3.71 16 13 N -0.71 -13.68 5.45 -463.05 -2.52 -16.20 16 14 C 0.51 11.82 7.16 87.66 0.63 12.45 16 15 O -0.59 -20.69 15.98 -3.04 -0.05 -20.74 16 16 C -0.09 -1.31 2.52 -11.54 -0.03 -1.34 16 17 H 0.13 0.99 8.14 -2.39 -0.02 0.97 16 18 C -0.11 -1.01 5.10 30.59 0.16 -0.85 16 19 C -0.11 -0.34 5.92 30.59 0.18 -0.16 16 20 C -0.11 -0.57 5.10 30.59 0.16 -0.41 16 21 C -0.10 -1.00 2.53 -11.54 -0.03 -1.03 16 22 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 23 C 0.51 8.02 7.43 87.66 0.65 8.67 16 24 N -0.83 -4.83 8.77 -173.53 -1.52 -6.35 16 25 O -0.60 -17.15 16.82 -3.04 -0.05 -17.20 16 26 C -0.08 -1.49 3.06 30.59 0.09 -1.40 16 27 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 28 H 0.37 15.66 5.53 -92.71 -0.51 15.15 16 29 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.08 1.93 8.14 -2.38 -0.02 1.91 16 33 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.06 1.59 8.14 -2.38 -0.02 1.57 16 35 H 0.42 4.86 7.89 -92.71 -0.73 4.12 16 36 H 0.09 0.50 7.57 -2.38 -0.02 0.48 16 37 H 0.05 0.68 8.14 -2.39 -0.02 0.66 16 38 H 0.09 0.14 8.14 -2.39 -0.02 0.12 16 39 H 0.09 -0.08 8.14 -2.39 -0.02 -0.09 16 40 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 41 H 0.10 -0.09 7.57 -2.39 -0.02 -0.11 16 42 H 0.42 -0.89 8.25 -92.71 -0.76 -1.65 16 43 H 0.40 2.16 8.93 -92.71 -0.83 1.33 16 44 H 0.04 1.09 8.06 -2.39 -0.02 1.07 16 45 H 0.05 1.17 8.06 -2.39 -0.02 1.15 16 Total: -1.00 -89.84 362.95 -1.32 -91.16 By element: Atomic # 1 Polarization: 19.21 SS G_CDS: -1.88 Total: 17.34 kcal Atomic # 6 Polarization: 1.71 SS G_CDS: 4.35 Total: 6.06 kcal Atomic # 7 Polarization: -117.38 SS G_CDS: -5.60 Total: -122.98 kcal Atomic # 8 Polarization: -37.84 SS G_CDS: -0.10 Total: -37.94 kcal Atomic # 14 Polarization: 44.45 SS G_CDS: 1.90 Total: 46.36 kcal Total: -89.84 -1.32 -91.16 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001167504439.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.015 kcal (2) G-P(sol) polarization free energy of solvation -89.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.854 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -91.159 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds