Wall clock time and date at job start Tue Mar 31 2020 04:24:05
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.37104 * 119.99984 * 2 1
4 4 H 1.07994 * 120.00039 * 202.40199 * 3 2 1
5 5 C 1.38949 * 119.99424 * 22.40599 * 3 2 1
6 6 N 1.31408 * 120.00435 * 11.60919 * 5 3 2
7 7 Si 1.86800 * 119.99391 * 191.60660 * 5 3 2
8 8 H 1.48502 * 109.47413 * 359.97438 * 7 5 3
9 9 H 1.48500 * 109.47313 * 119.99846 * 7 5 3
10 10 H 1.48502 * 109.47464 * 239.99789 * 7 5 3
11 11 C 1.34777 * 120.00221 * 179.97438 * 2 1 3
12 12 O 1.21290 * 120.00132 * 180.02562 * 11 2 1
13 13 C 1.50703 * 119.99982 * 0.02562 * 11 2 1
14 14 C 1.52995 * 109.47234 * 180.02562 * 13 11 2
15 15 C 1.50703 * 109.47253 * 179.97438 * 14 13 11
16 16 O 1.21280 * 119.99600 * 0.27618 * 15 14 13
17 17 N 1.34777 * 120.00024 * 179.97438 * 15 14 13
18 18 C 1.46061 * 118.72924 * 179.97438 * 17 15 14
19 19 C 1.53228 * 109.72278 * 116.16717 * 18 17 15
20 20 N 1.46915 * 108.81956 * 81.59522 * 19 18 17
21 21 C 1.33638 * 120.62901 * 288.06502 * 20 19 18
22 22 O 1.21277 * 119.77014 * 180.26575 * 21 20 19
23 23 C 1.51194 * 120.45367 * 0.29101 * 21 20 19
24 24 C 1.46155 * 118.73060 * 359.74359 * 17 15 14
25 25 H 1.08995 * 109.47127 * 272.15004 * 1 2 3
26 26 H 1.09002 * 109.47084 * 32.15845 * 1 2 3
27 27 H 1.09003 * 109.46723 * 152.15504 * 1 2 3
28 28 H 0.97005 * 120.00157 * 180.02562 * 6 5 3
29 29 H 1.08996 * 109.46941 * 59.99506 * 13 11 2
30 30 H 1.09009 * 109.46652 * 299.99840 * 13 11 2
31 31 H 1.09000 * 109.47132 * 59.99268 * 14 13 11
32 32 H 1.08999 * 109.46824 * 299.99957 * 14 13 11
33 33 H 1.09000 * 109.43538 * 236.23869 * 18 17 15
34 34 H 1.09004 * 109.43242 * 356.14115 * 18 17 15
35 35 H 1.08998 * 109.57936 * 201.39907 * 19 18 17
36 36 H 1.08996 * 109.57426 * 321.66342 * 19 18 17
37 37 H 0.97006 * 119.68733 * 108.05335 * 20 19 18
38 38 H 1.09000 * 109.60807 * 190.97347 * 23 21 20
39 39 H 1.08997 * 109.61343 * 311.31550 * 23 21 20
40 40 H 1.09003 * 109.46821 * 3.69148 * 24 17 15
41 41 H 1.09001 * 109.47031 * 123.66688 * 24 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1505 1.1874 0.0000
4 1 3.1693 1.2227 -0.3564
5 6 1.5343 2.3452 0.4587
6 7 0.3896 2.2706 1.0997
7 14 2.3333 4.0078 0.1641
8 1 3.6079 3.8206 -0.5746
9 1 1.4185 4.8620 -0.6350
10 1 2.6091 4.6626 1.4681
11 6 2.1389 -1.1672 0.0005
12 8 3.3518 -1.1672 0.0010
13 6 1.3855 -2.4723 0.0005
14 6 2.3797 -3.6352 0.0018
15 6 1.6262 -4.9404 0.0024
16 8 0.4134 -4.9403 -0.0031
17 7 2.3002 -6.1075 0.0031
18 6 1.5420 -7.3560 0.0043
19 6 1.8169 -8.1291 -1.2898
20 7 3.0826 -8.8608 -1.1450
21 6 4.2495 -8.2096 -1.1466
22 8 5.2853 -8.8297 -1.0309
23 6 4.2873 -6.7051 -1.2912
24 6 3.7613 -6.0751 -0.0026
25 1 -0.3633 0.0386 1.0269
26 1 -0.3633 0.8700 -0.5470
27 1 -0.3633 -0.9087 -0.4800
28 1 -0.0407 3.0790 1.4196
29 1 0.7591 -2.5302 -0.8896
30 1 0.7585 -2.5298 0.8904
31 1 3.0057 -3.5770 0.8922
32 1 3.0070 -3.5778 -0.8877
33 1 1.8423 -7.9619 0.8592
34 1 0.4772 -7.1335 0.0736
35 1 1.0062 -8.8342 -1.4733
36 1 1.8896 -7.4310 -2.1238
37 1 3.0711 -9.8259 -1.0471
38 1 5.3130 -6.3799 -1.4652
39 1 3.6604 -6.4022 -2.1298
40 1 4.1020 -5.0416 0.0594
41 1 4.1405 -6.6343 0.8528
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001180267790.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:24:05
Heat of formation + Delta-G solvation = -94.292182 kcal
Electronic energy + Delta-G solvation = -24258.317076 eV
Core-core repulsion = 20559.764426 eV
Total energy + Delta-G solvation = -3698.552650 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 297.152 amu
Computer time = 0.71 seconds
Orbital eigenvalues (eV)
-40.90810 -39.53636 -38.35435 -36.68212 -34.96499 -34.72563 -32.55063 -31.82101
-31.43030 -29.04885 -26.57739 -25.58388 -24.94459 -23.96287 -22.61570 -20.39729
-19.35921 -18.57500 -17.75201 -17.43385 -16.94569 -16.74225 -16.26779 -15.84491
-15.60215 -15.14725 -14.54062 -14.42086 -14.21528 -13.99124 -13.55946 -13.41190
-13.07016 -12.83041 -12.50979 -12.43669 -12.36176 -12.02896 -11.90879 -11.60583
-11.43175 -11.28369 -11.13258 -10.83450 -10.72112 -10.31946 -10.20211 -10.13215
-9.76909 -9.69582 -9.02189 -8.91711 -8.39036 -7.66920 -6.29659 -3.86674
2.28753 2.57559 2.71690 2.91122 3.15501 3.25908 3.32605 3.91269
4.09679 4.13930 4.37711 4.55352 4.61423 4.70175 4.80576 4.87945
4.94327 5.00849 5.14244 5.25192 5.40032 5.45857 5.49403 5.53229
5.57574 5.85609 6.06316 6.23209 6.29498 6.40333 6.41226 6.48890
6.84946 6.92831 7.09906 7.27572 7.57748 7.87098 8.07569 8.15026
8.49403 9.19663 9.44948 9.99544 10.73762
Molecular weight = 297.15amu
Principal moments of inertia in cm(-1)
A = 0.033765 B = 0.002936 C = 0.002747
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.054438 B = 9536.057534 C =10190.004416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.111 3.889
2 N -0.446 5.446
3 C -0.306 4.306
4 H 0.099 0.901
5 C 0.029 3.971
6 N -0.883 5.883
7 Si 0.926 3.074
8 H -0.268 1.268
9 H -0.281 1.281
10 H -0.282 1.282
11 C 0.444 3.556
12 O -0.597 6.597
13 C -0.113 4.113
14 C -0.120 4.120
15 C 0.514 3.486
16 O -0.535 6.535
17 N -0.620 5.620
18 C 0.088 3.912
19 C 0.092 3.908
20 N -0.726 5.726
21 C 0.519 3.481
22 O -0.550 6.550
23 C -0.159 4.159
24 C 0.111 3.889
25 H 0.058 0.942
26 H 0.067 0.933
27 H 0.029 0.971
28 H 0.266 0.734
29 H 0.082 0.918
30 H 0.084 0.916
31 H 0.100 0.900
32 H 0.100 0.900
33 H 0.074 0.926
34 H 0.111 0.889
35 H 0.099 0.901
36 H 0.082 0.918
37 H 0.400 0.600
38 H 0.113 0.887
39 H 0.097 0.903
40 H 0.112 0.888
41 H 0.076 0.924
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -0.466 -18.765 -3.853 19.162
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.033 4.033
2 N -0.164 5.164
3 C -0.434 4.434
4 H 0.117 0.883
5 C -0.174 4.174
6 N -0.522 5.522
7 Si 0.753 3.247
8 H -0.192 1.192
9 H -0.207 1.207
10 H -0.208 1.208
11 C 0.232 3.768
12 O -0.483 6.483
13 C -0.154 4.154
14 C -0.160 4.160
15 C 0.304 3.696
16 O -0.411 6.411
17 N -0.355 5.355
18 C -0.036 4.036
19 C -0.033 4.033
20 N -0.379 5.379
21 C 0.305 3.695
22 O -0.427 6.427
23 C -0.200 4.200
24 C -0.012 4.012
25 H 0.076 0.924
26 H 0.086 0.914
27 H 0.048 0.952
28 H 0.077 0.923
29 H 0.101 0.899
30 H 0.103 0.897
31 H 0.119 0.881
32 H 0.118 0.882
33 H 0.092 0.908
34 H 0.129 0.871
35 H 0.117 0.883
36 H 0.101 0.899
37 H 0.236 0.764
38 H 0.132 0.868
39 H 0.115 0.885
40 H 0.130 0.870
41 H 0.094 0.906
Dipole moment (debyes) X Y Z Total
from point charges -0.134 -18.702 -3.728 19.071
hybrid contribution 0.033 0.456 0.003 0.457
sum -0.100 -18.246 -3.725 18.623
Atomic orbital electron populations
1.21526 0.81009 0.98929 1.01798 1.43604 1.05633 1.04830 1.62322
1.19713 0.99473 0.83883 1.40354 0.88310 1.25351 0.96510 1.00087
0.95433 1.70016 1.17373 1.29138 1.35687 0.85868 0.79246 0.81479
0.78131 1.19234 1.20701 1.20777 1.20027 0.87982 0.84931 0.83851
1.90493 1.13961 1.87345 1.56520 1.21258 0.97872 0.92262 1.04014
1.21422 0.99102 0.90040 1.05476 1.21239 0.88194 0.85780 0.74374
1.90676 1.14089 1.87341 1.49019 1.47885 1.06484 1.06075 1.75041
1.21946 0.99259 0.85058 0.97330 1.22203 0.85743 0.96852 0.98511
1.45990 1.06419 1.10998 1.74521 1.20627 0.83029 0.90788 0.75032
1.90766 1.32642 1.69564 1.49745 1.22359 1.05514 0.91573 1.00551
1.21486 0.79297 1.04013 0.96432 0.92378 0.91376 0.95203 0.92333
0.89920 0.89731 0.88142 0.88186 0.90787 0.87128 0.88308 0.89923
0.76353 0.86833 0.88480 0.86954 0.90551
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.11 2.51 8.52 59.85 0.51 3.02 16
2 N -0.45 -11.39 3.02 -122.19 -0.37 -11.76 16
3 C -0.31 -8.51 9.29 -14.93 -0.14 -8.65 16
4 H 0.10 2.86 7.41 -52.49 -0.39 2.47 16
5 C 0.03 0.77 5.11 -17.47 -0.09 0.68 16
6 N -0.88 -23.59 10.62 55.50 0.59 -23.00 16
7 Si 0.93 20.70 29.57 -169.99 -5.03 15.67 16
8 H -0.27 -5.98 7.11 56.52 0.40 -5.58 16
9 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16
10 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16
11 C 0.44 10.47 7.63 -10.98 -0.08 10.38 16
12 O -0.60 -15.62 15.67 5.55 0.09 -15.53 16
13 C -0.11 -2.04 3.51 -27.88 -0.10 -2.14 16
14 C -0.12 -1.74 3.26 -27.88 -0.09 -1.83 16
15 C 0.51 6.74 7.63 -10.98 -0.08 6.65 16
16 O -0.54 -8.55 15.18 5.56 0.08 -8.46 16
17 N -0.62 -6.06 2.78 -174.31 -0.48 -6.55 16
18 C 0.09 0.68 6.18 -4.16 -0.03 0.66 16
19 C 0.09 0.53 6.48 -3.70 -0.02 0.50 16
20 N -0.73 -5.09 5.30 -59.99 -0.32 -5.41 16
21 C 0.52 5.12 7.11 -11.25 -0.08 5.04 16
22 O -0.55 -7.71 17.91 5.56 0.10 -7.62 16
23 C -0.16 -1.29 5.58 -27.76 -0.15 -1.45 16
24 C 0.11 0.94 5.96 -4.35 -0.03 0.92 16
25 H 0.06 1.37 7.54 -51.93 -0.39 0.98 16
26 H 0.07 1.61 7.06 -51.93 -0.37 1.24 16
27 H 0.03 0.57 6.36 -51.93 -0.33 0.23 16
28 H 0.27 6.73 8.31 -40.82 -0.34 6.39 16
29 H 0.08 1.43 7.36 -51.93 -0.38 1.04 16
30 H 0.08 1.53 8.07 -51.92 -0.42 1.11 16
31 H 0.10 1.44 7.63 -51.93 -0.40 1.04 16
32 H 0.10 1.37 7.75 -51.93 -0.40 0.97 16
33 H 0.07 0.53 8.10 -51.93 -0.42 0.11 16
34 H 0.11 0.97 6.78 -51.93 -0.35 0.62 16
35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16
36 H 0.08 0.52 7.04 -51.93 -0.37 0.16 16
37 H 0.40 2.35 8.91 -40.82 -0.36 1.98 16
38 H 0.11 0.88 8.13 -51.93 -0.42 0.45 16
39 H 0.10 0.72 7.09 -51.93 -0.37 0.35 16
40 H 0.11 0.95 5.57 -51.93 -0.29 0.67 16
41 H 0.08 0.63 7.95 -51.93 -0.41 0.22 16
LS Contribution 332.82 15.07 5.02 5.02
Total: -1.00 -34.77 332.82 -6.33 -41.10
By element:
Atomic # 1 Polarization: 8.37 SS G_CDS: -5.63 Total: 2.74 kcal
Atomic # 6 Polarization: 14.17 SS G_CDS: -0.38 Total: 13.79 kcal
Atomic # 7 Polarization: -46.13 SS G_CDS: -0.58 Total: -46.72 kcal
Atomic # 8 Polarization: -31.88 SS G_CDS: 0.27 Total: -31.61 kcal
Atomic # 14 Polarization: 20.70 SS G_CDS: -5.03 Total: 15.67 kcal
Total LS contribution 5.02 Total: 5.02 kcal
Total: -34.77 -6.33 -41.10 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001180267790.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -53.188 kcal
(2) G-P(sol) polarization free energy of solvation -34.769 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.958 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.335 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.104 kcal
(6) G-S(sol) free energy of system = (1) + (5) -94.292 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.71 seconds