Wall clock time and date at job start Tue Mar 31 2020 04:24:04
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 N 1.46500 * 1
3 3 C 1.37104 * 119.99984 * 2 1
4 4 H 1.07994 * 120.00039 * 202.40199 * 3 2 1
5 5 C 1.38949 * 119.99424 * 22.40599 * 3 2 1
6 6 N 1.31408 * 120.00435 * 11.60919 * 5 3 2
7 7 Si 1.86800 * 119.99391 * 191.60660 * 5 3 2
8 8 H 1.48502 * 109.47413 * 359.97438 * 7 5 3
9 9 H 1.48500 * 109.47313 * 119.99846 * 7 5 3
10 10 H 1.48502 * 109.47464 * 239.99789 * 7 5 3
11 11 C 1.34777 * 120.00221 * 179.97438 * 2 1 3
12 12 O 1.21290 * 120.00132 * 180.02562 * 11 2 1
13 13 C 1.50703 * 119.99982 * 0.02562 * 11 2 1
14 14 C 1.52995 * 109.47234 * 180.02562 * 13 11 2
15 15 C 1.50703 * 109.47253 * 179.97438 * 14 13 11
16 16 O 1.21280 * 119.99600 * 0.27618 * 15 14 13
17 17 N 1.34777 * 120.00024 * 179.97438 * 15 14 13
18 18 C 1.46061 * 118.72924 * 179.97438 * 17 15 14
19 19 C 1.53228 * 109.72278 * 116.16717 * 18 17 15
20 20 N 1.46915 * 108.81956 * 81.59522 * 19 18 17
21 21 C 1.33638 * 120.62901 * 288.06502 * 20 19 18
22 22 O 1.21277 * 119.77014 * 180.26575 * 21 20 19
23 23 C 1.51194 * 120.45367 * 0.29101 * 21 20 19
24 24 C 1.46155 * 118.73060 * 359.74359 * 17 15 14
25 25 H 1.08995 * 109.47127 * 272.15004 * 1 2 3
26 26 H 1.09002 * 109.47084 * 32.15845 * 1 2 3
27 27 H 1.09003 * 109.46723 * 152.15504 * 1 2 3
28 28 H 0.97005 * 120.00157 * 180.02562 * 6 5 3
29 29 H 1.08996 * 109.46941 * 59.99506 * 13 11 2
30 30 H 1.09009 * 109.46652 * 299.99840 * 13 11 2
31 31 H 1.09000 * 109.47132 * 59.99268 * 14 13 11
32 32 H 1.08999 * 109.46824 * 299.99957 * 14 13 11
33 33 H 1.09000 * 109.43538 * 236.23869 * 18 17 15
34 34 H 1.09004 * 109.43242 * 356.14115 * 18 17 15
35 35 H 1.08998 * 109.57936 * 201.39907 * 19 18 17
36 36 H 1.08996 * 109.57426 * 321.66342 * 19 18 17
37 37 H 0.97006 * 119.68733 * 108.05335 * 20 19 18
38 38 H 1.09000 * 109.60807 * 190.97347 * 23 21 20
39 39 H 1.08997 * 109.61343 * 311.31550 * 23 21 20
40 40 H 1.09003 * 109.46821 * 3.69148 * 24 17 15
41 41 H 1.09001 * 109.47031 * 123.66688 * 24 17 15
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 7 1.4650 0.0000 0.0000
3 6 2.1505 1.1874 0.0000
4 1 3.1693 1.2227 -0.3564
5 6 1.5343 2.3452 0.4587
6 7 0.3896 2.2706 1.0997
7 14 2.3333 4.0078 0.1641
8 1 3.6079 3.8206 -0.5746
9 1 1.4185 4.8620 -0.6350
10 1 2.6091 4.6626 1.4681
11 6 2.1389 -1.1672 0.0005
12 8 3.3518 -1.1672 0.0010
13 6 1.3855 -2.4723 0.0005
14 6 2.3797 -3.6352 0.0018
15 6 1.6262 -4.9404 0.0024
16 8 0.4134 -4.9403 -0.0031
17 7 2.3002 -6.1075 0.0031
18 6 1.5420 -7.3560 0.0043
19 6 1.8169 -8.1291 -1.2898
20 7 3.0826 -8.8608 -1.1450
21 6 4.2495 -8.2096 -1.1466
22 8 5.2853 -8.8297 -1.0309
23 6 4.2873 -6.7051 -1.2912
24 6 3.7613 -6.0751 -0.0026
25 1 -0.3633 0.0386 1.0269
26 1 -0.3633 0.8700 -0.5470
27 1 -0.3633 -0.9087 -0.4800
28 1 -0.0407 3.0790 1.4196
29 1 0.7591 -2.5302 -0.8896
30 1 0.7585 -2.5298 0.8904
31 1 3.0057 -3.5770 0.8922
32 1 3.0070 -3.5778 -0.8877
33 1 1.8423 -7.9619 0.8592
34 1 0.4772 -7.1335 0.0736
35 1 1.0062 -8.8342 -1.4733
36 1 1.8896 -7.4310 -2.1238
37 1 3.0711 -9.8259 -1.0471
38 1 5.3130 -6.3799 -1.4652
39 1 3.6604 -6.4022 -2.1298
40 1 4.1020 -5.0416 0.0594
41 1 4.1405 -6.6343 0.8528
RHF calculation, no. of doubly occupied orbitals= 56
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001180267790.mol2 41
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:24:04
Heat of formation + Delta-G solvation = -120.041369 kcal
Electronic energy + Delta-G solvation = -24259.433644 eV
Core-core repulsion = 20559.764426 eV
Total energy + Delta-G solvation = -3699.669219 eV
No. of doubly occupied orbitals = 56
Molecular weight
(most abundant/longest-lived isotopes) = 297.152 amu
Computer time = 0.66 seconds
Orbital eigenvalues (eV)
-41.75464 -40.61536 -40.04525 -37.57058 -36.68871 -35.69431 -33.98340 -33.35855
-32.56974 -29.87857 -28.34194 -27.09178 -25.82347 -25.44706 -23.59581 -21.08997
-20.67335 -19.90828 -18.93111 -18.64337 -18.19989 -17.89404 -17.34485 -17.01791
-16.86476 -16.28477 -16.20266 -15.84099 -15.55573 -15.06846 -14.73334 -14.52152
-14.15271 -13.82282 -13.71802 -13.52137 -13.33289 -13.19416 -13.12427 -13.10002
-12.94068 -12.65107 -12.54584 -12.47095 -12.21901 -12.09154 -12.00571 -11.00786
-10.96692 -10.81364 -10.43005 -10.31721 -9.70555 -9.66738 -8.30279 -5.96090
1.37828 1.42811 1.51114 1.56682 1.57067 1.86929 2.05747 2.30110
2.30745 3.08076 3.12457 3.43302 3.53386 3.90493 3.94817 4.06277
4.11608 4.14936 4.21099 4.25891 4.26974 4.40844 4.57865 4.71171
4.77562 4.84419 4.90534 4.94432 4.98431 5.05082 5.08506 5.41026
5.47447 5.48681 5.82686 6.11582 6.14929 6.22694 6.49785 7.09166
7.17825 7.18764 7.50957 8.05421 8.71635
Molecular weight = 297.15amu
Principal moments of inertia in cm(-1)
A = 0.033765 B = 0.002936 C = 0.002747
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 829.054438 B = 9536.057534 C =10190.004416
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C 0.123 3.877
2 N -0.466 5.466
3 C -0.343 4.343
4 H 0.075 0.925
5 C -0.006 4.006
6 N -0.899 5.899
7 Si 0.990 3.010
8 H -0.271 1.271
9 H -0.267 1.267
10 H -0.277 1.277
11 C 0.438 3.562
12 O -0.628 6.628
13 C -0.100 4.100
14 C -0.116 4.116
15 C 0.522 3.478
16 O -0.566 6.566
17 N -0.610 5.610
18 C 0.084 3.916
19 C 0.098 3.902
20 N -0.713 5.713
21 C 0.516 3.484
22 O -0.597 6.597
23 C -0.153 4.153
24 C 0.111 3.889
25 H 0.044 0.956
26 H 0.052 0.948
27 H 0.066 0.934
28 H 0.272 0.728
29 H 0.095 0.905
30 H 0.086 0.914
31 H 0.100 0.900
32 H 0.109 0.891
33 H 0.083 0.917
34 H 0.105 0.895
35 H 0.132 0.868
36 H 0.082 0.918
37 H 0.408 0.592
38 H 0.117 0.883
39 H 0.108 0.892
40 H 0.113 0.887
41 H 0.082 0.918
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -1.119 -19.647 -4.335 20.151
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.020 4.020
2 N -0.185 5.185
3 C -0.471 4.471
4 H 0.093 0.907
5 C -0.207 4.207
6 N -0.538 5.538
7 Si 0.814 3.186
8 H -0.196 1.196
9 H -0.192 1.192
10 H -0.203 1.203
11 C 0.228 3.772
12 O -0.516 6.516
13 C -0.141 4.141
14 C -0.156 4.156
15 C 0.312 3.688
16 O -0.444 6.444
17 N -0.343 5.343
18 C -0.038 4.038
19 C -0.026 4.026
20 N -0.365 5.365
21 C 0.303 3.697
22 O -0.479 6.479
23 C -0.193 4.193
24 C -0.012 4.012
25 H 0.062 0.938
26 H 0.071 0.929
27 H 0.084 0.916
28 H 0.082 0.918
29 H 0.114 0.886
30 H 0.104 0.896
31 H 0.119 0.881
32 H 0.127 0.873
33 H 0.101 0.899
34 H 0.123 0.877
35 H 0.150 0.850
36 H 0.101 0.899
37 H 0.245 0.755
38 H 0.135 0.865
39 H 0.127 0.873
40 H 0.131 0.869
41 H 0.100 0.900
Dipole moment (debyes) X Y Z Total
from point charges -0.824 -19.627 -4.211 20.091
hybrid contribution 0.231 0.664 0.181 0.726
sum -0.593 -18.963 -4.030 19.395
Atomic orbital electron populations
1.21424 0.79554 0.99998 1.01053 1.43884 1.06709 1.04955 1.62948
1.19697 0.99273 0.85789 1.42337 0.90661 1.26114 0.97008 1.02961
0.94625 1.70093 1.18001 1.30270 1.35472 0.84923 0.78346 0.77210
0.78139 1.19577 1.19242 1.20252 1.20965 0.87976 0.86206 0.82012
1.90459 1.15601 1.88100 1.57397 1.21143 0.98110 0.90268 1.04564
1.21336 0.98423 0.89797 1.06033 1.20825 0.87542 0.86066 0.74402
1.90671 1.15120 1.87747 1.50911 1.47875 1.07002 1.05901 1.73506
1.22126 0.98643 0.84197 0.98879 1.22283 0.85828 0.97350 0.97185
1.45963 1.06163 1.11518 1.72839 1.20902 0.83022 0.91356 0.74389
1.90749 1.34398 1.70519 1.52203 1.22313 1.06031 0.90433 1.00567
1.21552 0.78408 1.04268 0.96963 0.93753 0.92941 0.91573 0.91815
0.88648 0.89583 0.88134 0.87313 0.89886 0.87692 0.84988 0.89937
0.75500 0.86485 0.87344 0.86874 0.90017
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C 0.12 5.54 8.52 127.77 1.09 6.63 16
2 N -0.47 -24.11 3.02 -658.89 -1.99 -26.10 16
3 C -0.34 -19.46 9.29 84.04 0.78 -18.68 16
4 H 0.08 4.52 7.41 -2.91 -0.02 4.50 16
5 C -0.01 -0.31 5.11 84.93 0.43 0.13 16
6 N -0.90 -48.07 10.62 21.66 0.23 -47.84 16
7 Si 0.99 42.43 29.57 68.60 2.03 44.46 16
8 H -0.27 -11.66 7.11 99.48 0.71 -10.95 16
9 H -0.27 -10.82 7.11 99.48 0.71 -10.12 16
10 H -0.28 -11.60 7.11 99.48 0.71 -10.89 16
11 C 0.44 20.76 7.63 87.66 0.67 21.43 16
12 O -0.63 -33.27 15.67 -3.06 -0.05 -33.32 16
13 C -0.10 -3.51 3.51 29.85 0.10 -3.41 16
14 C -0.12 -3.20 3.26 29.85 0.10 -3.10 16
15 C 0.52 12.74 7.63 87.66 0.67 13.41 16
16 O -0.57 -17.08 15.18 -3.03 -0.05 -17.13 16
17 N -0.61 -10.63 2.78 -823.77 -2.29 -12.92 16
18 C 0.08 1.09 6.18 86.54 0.53 1.63 16
19 C 0.10 0.81 6.48 86.38 0.56 1.37 16
20 N -0.71 -8.30 5.30 -462.74 -2.45 -10.75 16
21 C 0.52 9.40 7.11 87.99 0.63 10.02 16
22 O -0.60 -16.43 17.91 -3.02 -0.05 -16.48 16
23 C -0.15 -2.21 5.58 29.93 0.17 -2.04 16
24 C 0.11 1.69 5.96 86.37 0.52 2.20 16
25 H 0.04 2.09 7.54 -2.39 -0.02 2.07 16
26 H 0.05 2.49 7.06 -2.39 -0.02 2.47 16
27 H 0.07 2.44 6.36 -2.39 -0.02 2.42 16
28 H 0.27 13.60 8.31 -92.70 -0.77 12.83 16
29 H 0.10 3.12 7.36 -2.39 -0.02 3.10 16
30 H 0.09 3.02 8.07 -2.38 -0.02 3.00 16
31 H 0.10 2.78 7.63 -2.39 -0.02 2.77 16
32 H 0.11 2.81 7.75 -2.39 -0.02 2.79 16
33 H 0.08 0.97 8.10 -2.39 -0.02 0.95 16
34 H 0.10 1.59 6.78 -2.38 -0.02 1.57 16
35 H 0.13 0.32 8.14 -2.39 -0.02 0.30 16
36 H 0.08 0.78 7.04 -2.39 -0.02 0.76 16
37 H 0.41 3.82 8.91 -92.70 -0.83 2.99 16
38 H 0.12 1.66 8.13 -2.39 -0.02 1.64 16
39 H 0.11 1.34 7.09 -2.39 -0.02 1.33 16
40 H 0.11 1.75 5.57 -2.39 -0.01 1.74 16
41 H 0.08 1.21 7.95 -2.39 -0.02 1.19 16
Total: -1.00 -75.90 332.82 1.86 -74.04
By element:
Atomic # 1 Polarization: 16.22 SS G_CDS: 0.24 Total: 16.45 kcal
Atomic # 6 Polarization: 23.33 SS G_CDS: 6.25 Total: 29.58 kcal
Atomic # 7 Polarization: -91.10 SS G_CDS: -6.50 Total: -97.61 kcal
Atomic # 8 Polarization: -66.78 SS G_CDS: -0.15 Total: -66.93 kcal
Atomic # 14 Polarization: 42.43 SS G_CDS: 2.03 Total: 44.46 kcal
Total: -75.90 1.86 -74.04 kcal
The number of atoms in the molecule is 41
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001180267790.mol2 41
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -46.002 kcal
(2) G-P(sol) polarization free energy of solvation -75.904 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.906 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.865 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.039 kcal
(6) G-S(sol) free energy of system = (1) + (5) -120.041 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.66 seconds