Wall clock time and date at job start Tue Mar 31 2020 04:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.34773 * 120.00084 * 2 1 4 4 O 1.21274 * 120.00200 * 5.05305 * 3 2 1 5 5 C 1.50705 * 119.99878 * 185.05335 * 3 2 1 6 6 C 1.50700 * 115.54951 * 294.13819 * 5 3 2 7 7 O 1.21282 * 120.00054 * 99.04046 * 6 5 3 8 8 N 1.34774 * 120.00309 * 279.03790 * 6 5 3 9 9 C 1.46500 * 120.00351 * 174.97467 * 8 6 5 10 10 H 1.08996 * 110.88266 * 37.42384 * 9 8 6 11 11 C 1.54909 * 110.99960 * 273.54870 * 9 8 6 12 12 N 1.47429 * 104.82655 * 204.87732 * 11 9 8 13 13 C 1.36936 * 125.64608 * 204.09551 * 12 11 9 14 14 H 1.07999 * 120.00196 * 354.85732 * 13 12 11 15 15 C 1.38812 * 119.99982 * 174.86526 * 13 12 11 16 16 N 1.31618 * 120.00114 * 7.18076 * 15 13 12 17 17 Si 1.86808 * 120.00156 * 187.18798 * 15 13 12 18 18 H 1.48498 * 109.47137 * 94.98164 * 17 15 13 19 19 H 1.48501 * 109.47042 * 214.98417 * 17 15 13 20 20 H 1.48506 * 109.46876 * 334.98177 * 17 15 13 21 21 C 1.47017 * 108.70491 * 24.12599 * 12 11 9 22 22 C 1.54322 * 107.40322 * 358.86896 * 21 12 11 23 23 H 1.08991 * 110.72484 * 96.24273 * 22 21 12 24 24 O 1.42908 * 110.71886 * 219.52316 * 22 21 12 25 25 C 1.52997 * 117.51550 * 79.84082 * 5 3 2 26 26 C 1.52992 * 60.00036 * 107.47881 * 25 5 3 27 27 H 1.08999 * 109.46844 * 300.00646 * 1 2 3 28 28 H 1.08997 * 109.46465 * 59.99968 * 1 2 3 29 29 H 1.08994 * 109.47077 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99703 * 179.97438 * 2 1 3 31 31 H 0.97006 * 119.99900 * 354.97468 * 8 6 5 32 32 H 1.08998 * 110.36927 * 86.04525 * 11 9 8 33 33 H 1.08993 * 110.46160 * 323.75570 * 11 9 8 34 34 H 0.97001 * 120.00504 * 179.97438 * 16 15 13 35 35 H 1.09003 * 109.88172 * 118.36030 * 21 12 11 36 36 H 1.09001 * 109.88872 * 239.36876 * 21 12 11 37 37 H 0.96701 * 113.99597 * 298.53544 * 24 22 21 38 38 H 1.08998 * 117.49717 * 214.97039 * 25 5 3 39 39 H 1.09000 * 117.50024 * 359.97438 * 25 5 3 40 40 H 1.09002 * 117.50411 * 252.50642 * 26 25 5 41 41 H 1.09005 * 117.50096 * 107.48691 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1389 1.1672 0.0000 4 8 1.5362 2.2154 0.0925 5 6 3.6416 1.1696 -0.1150 6 6 4.3833 0.5606 1.0469 7 8 4.7914 -0.5793 0.9754 8 7 4.5933 1.2826 2.1654 9 6 5.2160 0.6573 3.3348 10 1 5.9929 -0.0449 3.0324 11 6 4.1548 -0.0378 4.2238 12 7 4.7523 -0.0676 5.5712 13 6 4.4341 -0.9534 6.5659 14 1 3.6293 -1.6593 6.4232 15 6 5.1458 -0.9438 7.7576 16 7 6.0293 0.0039 7.9889 17 14 4.8499 -2.2763 9.0330 18 1 5.8484 -3.3612 8.8563 19 1 4.9836 -1.6973 10.3939 20 1 3.4823 -2.8296 8.8626 21 6 5.7458 1.0115 5.6704 22 6 5.7852 1.7295 4.3050 23 1 5.1497 2.6149 4.3163 24 8 7.1270 2.0730 3.9529 25 6 4.2441 0.9905 -1.5099 26 6 4.2938 2.3577 -0.8249 27 1 -0.3633 0.5139 0.8899 28 1 -0.3632 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.9500 -0.8401 0.0004 31 1 4.3322 2.2163 2.1962 32 1 3.9678 -1.0514 3.8692 33 1 3.2289 0.5373 4.2321 34 1 6.5264 0.0109 8.8218 35 1 5.4531 1.7143 6.4505 36 1 6.7263 0.5931 5.8977 37 1 7.5532 2.6800 4.5733 38 1 5.1770 0.4322 -1.5872 39 1 3.5536 0.8704 -2.3447 40 1 3.6360 3.1374 -1.2091 41 1 5.2594 2.6988 -0.4516 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001196898726.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:24:08 Heat of formation + Delta-G solvation = -89.997100 kcal Electronic energy + Delta-G solvation = -24758.338969 eV Core-core repulsion = 21059.972568 eV Total energy + Delta-G solvation = -3698.366401 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.84782 -40.48831 -39.40283 -37.13530 -36.69535 -35.73872 -35.58225 -33.62945 -30.33166 -29.00662 -28.53178 -26.65993 -25.30573 -23.44490 -22.98904 -22.35013 -21.84954 -20.90770 -19.51030 -18.93547 -18.26063 -17.46241 -17.32856 -17.03160 -16.67906 -16.24791 -16.05304 -15.78272 -15.55902 -15.15212 -14.91736 -14.53306 -14.28053 -14.19721 -13.85149 -13.77557 -13.22539 -13.16772 -13.15963 -12.81579 -12.75479 -12.59088 -12.27559 -12.10825 -11.92176 -11.76720 -11.53506 -11.26780 -11.03657 -10.81218 -10.77733 -10.27867 -10.23534 -9.00476 -7.92669 -5.28770 1.11625 1.44818 1.46571 1.47387 1.55696 1.85789 2.07363 2.45006 2.65636 3.06742 3.27617 3.46018 3.47576 3.55930 3.69371 3.78912 3.86691 4.01744 4.13409 4.38386 4.40030 4.49759 4.57597 4.59685 4.65983 4.74922 4.85855 4.89777 4.92525 5.10829 5.29848 5.30909 5.34641 5.43130 5.62559 6.10193 6.30449 6.37874 6.82093 6.99411 7.01771 7.05079 7.65766 8.28649 9.17784 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.018836 B = 0.004073 C = 0.003600 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.187910 B = 6872.874102 C = 7775.261508 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.721 5.721 3 C 0.559 3.441 4 O -0.560 6.560 5 C -0.212 4.212 6 C 0.558 3.442 7 O -0.560 6.560 8 N -0.696 5.696 9 C 0.153 3.847 10 H 0.079 0.921 11 C 0.133 3.867 12 N -0.620 5.620 13 C -0.252 4.252 14 H 0.082 0.918 15 C -0.057 4.057 16 N -0.945 5.945 17 Si 0.979 3.021 18 H -0.287 1.287 19 H -0.290 1.290 20 H -0.268 1.268 21 C 0.159 3.841 22 C 0.092 3.908 23 H 0.089 0.911 24 O -0.566 6.566 25 C -0.112 4.112 26 C -0.120 4.120 27 H 0.049 0.951 28 H 0.066 0.934 29 H 0.107 0.893 30 H 0.414 0.586 31 H 0.414 0.586 32 H 0.038 0.962 33 H 0.033 0.967 34 H 0.250 0.750 35 H 0.024 0.976 36 H 0.027 0.973 37 H 0.397 0.603 38 H 0.113 0.887 39 H 0.127 0.873 40 H 0.121 0.879 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.792 4.951 -19.033 20.501 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.372 5.372 3 C 0.344 3.656 4 O -0.438 6.438 5 C -0.218 4.218 6 C 0.344 3.656 7 O -0.438 6.438 8 N -0.346 5.346 9 C 0.047 3.953 10 H 0.097 0.903 11 C 0.006 3.994 12 N -0.348 5.348 13 C -0.380 4.380 14 H 0.099 0.901 15 C -0.250 4.250 16 N -0.593 5.593 17 Si 0.807 3.193 18 H -0.214 1.214 19 H -0.217 1.217 20 H -0.193 1.193 21 C 0.034 3.966 22 C 0.031 3.969 23 H 0.107 0.893 24 O -0.374 6.374 25 C -0.149 4.149 26 C -0.157 4.157 27 H 0.067 0.933 28 H 0.084 0.916 29 H 0.125 0.875 30 H 0.249 0.751 31 H 0.251 0.749 32 H 0.057 0.943 33 H 0.050 0.950 34 H 0.060 0.940 35 H 0.042 0.958 36 H 0.045 0.955 37 H 0.247 0.753 38 H 0.132 0.868 39 H 0.145 0.855 40 H 0.139 0.861 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -6.049 4.436 -19.311 20.717 hybrid contribution 0.182 -0.394 1.799 1.851 sum -5.867 4.041 -17.511 18.905 Atomic orbital electron populations 1.21761 0.77852 1.04439 1.01996 1.45840 1.08883 1.08594 1.73833 1.19147 0.87057 0.83891 0.75497 1.90697 1.70006 1.32569 1.50547 1.21318 0.92320 1.11906 0.96290 1.19450 0.78488 0.85177 0.82490 1.90721 1.51715 1.19346 1.82005 1.45728 1.61502 1.15165 1.12247 1.21852 0.94481 0.94651 0.84305 0.90255 1.21892 0.94575 0.98235 0.84714 1.44486 1.45346 1.35398 1.09569 1.19430 1.13961 1.10734 0.93871 0.90053 1.25648 0.98565 1.00711 1.00120 1.70121 1.29415 1.34193 1.25613 0.85064 0.78002 0.78415 0.77863 1.21446 1.21664 1.19268 1.21663 0.93006 0.89371 0.92609 1.23144 0.84263 0.96180 0.93275 0.89298 1.86409 1.26917 1.70108 1.53949 1.23202 1.02862 0.99027 0.89805 1.23246 1.02188 0.91306 0.98983 0.93256 0.91569 0.87456 0.75109 0.74925 0.94328 0.94961 0.94036 0.95790 0.95469 0.75258 0.86850 0.85476 0.86059 0.86251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.30 10.71 127.77 1.37 2.67 16 2 N -0.72 -14.38 5.71 -484.53 -2.77 -17.15 16 3 C 0.56 13.56 7.06 87.66 0.62 14.18 16 4 O -0.56 -16.63 16.71 -3.01 -0.05 -16.68 16 5 C -0.21 -4.64 2.25 -53.67 -0.12 -4.76 16 6 C 0.56 16.23 6.97 87.66 0.61 16.84 16 7 O -0.56 -20.11 16.72 -3.04 -0.05 -20.16 16 8 N -0.70 -20.43 5.23 -435.57 -2.28 -22.71 16 9 C 0.15 5.72 3.09 46.47 0.14 5.86 16 10 H 0.08 3.41 7.66 -2.39 -0.02 3.40 16 11 C 0.13 5.73 6.93 86.85 0.60 6.33 16 12 N -0.62 -32.29 3.39 -692.00 -2.35 -34.64 16 13 C -0.25 -14.26 10.27 84.03 0.86 -13.40 16 14 H 0.08 4.45 7.84 -2.91 -0.02 4.43 16 15 C -0.06 -3.21 5.48 84.86 0.46 -2.75 16 16 N -0.95 -55.73 10.36 21.65 0.22 -55.51 16 17 Si 0.98 45.59 29.56 68.60 2.03 47.61 16 18 H -0.29 -13.32 7.11 99.48 0.71 -12.61 16 19 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 20 H -0.27 -11.84 7.11 99.48 0.71 -11.13 16 21 C 0.16 7.66 5.15 86.73 0.45 8.11 16 22 C 0.09 3.30 3.97 31.87 0.13 3.42 16 23 H 0.09 2.72 8.00 -2.39 -0.02 2.70 16 24 O -0.57 -18.49 13.40 -148.98 -2.00 -20.49 16 25 C -0.11 -1.76 9.87 30.59 0.30 -1.45 16 26 C -0.12 -1.95 9.76 30.59 0.30 -1.65 16 27 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 28 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 29 H 0.11 1.04 8.14 -2.39 -0.02 1.02 16 30 H 0.41 7.49 8.83 -92.71 -0.82 6.67 16 31 H 0.41 10.20 8.53 -92.70 -0.79 9.41 16 32 H 0.04 1.73 8.14 -2.39 -0.02 1.72 16 33 H 0.03 1.35 8.14 -2.39 -0.02 1.33 16 34 H 0.25 14.29 8.31 -92.71 -0.77 13.52 16 35 H 0.02 1.25 7.61 -2.39 -0.02 1.23 16 36 H 0.03 1.49 7.21 -2.39 -0.02 1.47 16 37 H 0.40 9.73 9.11 -74.06 -0.67 9.06 16 38 H 0.11 1.83 8.14 -2.39 -0.02 1.81 16 39 H 0.13 1.50 8.14 -2.39 -0.02 1.48 16 40 H 0.12 1.84 8.00 -2.39 -0.02 1.82 16 41 H 0.12 1.75 8.14 -2.38 -0.02 1.73 16 Total: -1.00 -75.40 350.14 -2.72 -78.12 By element: Atomic # 1 Polarization: 29.40 SS G_CDS: -1.20 Total: 28.19 kcal Atomic # 6 Polarization: 27.68 SS G_CDS: 5.72 Total: 33.40 kcal Atomic # 7 Polarization: -122.83 SS G_CDS: -7.17 Total: -130.00 kcal Atomic # 8 Polarization: -55.23 SS G_CDS: -2.10 Total: -57.33 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 2.03 Total: 47.61 kcal Total: -75.40 -2.72 -78.12 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001196898726.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.882 kcal (2) G-P(sol) polarization free energy of solvation -75.397 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.278 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.997 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds