Wall clock time and date at job start Tue Mar 31 2020 04:13:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21281 * 119.99872 * 2 1 4 4 N 1.34771 * 120.00147 * 179.97438 * 2 1 3 5 5 C 1.46500 * 120.00447 * 179.97438 * 4 2 1 6 6 H 1.09008 * 109.46644 * 35.00365 * 5 4 2 7 7 C 1.53002 * 109.47500 * 155.00083 * 5 4 2 8 8 C 1.50699 * 109.46911 * 295.00219 * 7 5 4 9 9 O 1.21276 * 120.00596 * 354.55638 * 8 7 5 10 10 N 1.34782 * 119.99687 * 174.55130 * 8 7 5 11 11 C 1.46498 * 119.99667 * 174.81284 * 10 8 7 12 12 C 1.53009 * 109.46864 * 185.11905 * 11 10 8 13 13 C 1.50703 * 115.54808 * 64.91163 * 12 11 10 14 14 H 1.08000 * 120.00092 * 266.87976 * 13 12 11 15 15 C 1.37880 * 119.99585 * 86.87447 * 13 12 11 16 16 N 1.31516 * 119.99370 * 180.52296 * 15 13 12 17 17 Si 1.86799 * 120.00389 * 0.53156 * 15 13 12 18 18 H 1.48501 * 109.46892 * 84.73087 * 17 15 13 19 19 H 1.48494 * 109.47036 * 204.73339 * 17 15 13 20 20 H 1.48501 * 109.46663 * 324.73059 * 17 15 13 21 21 C 1.52994 * 117.49901 * 279.24147 * 12 11 10 22 22 C 1.52997 * 117.49905 * 210.57818 * 12 11 10 23 23 C 1.50695 * 109.47198 * 275.00369 * 5 4 2 24 24 N 1.34778 * 119.99929 * 179.97438 * 23 5 4 25 25 O 1.21275 * 120.00220 * 359.97438 * 23 5 4 26 26 H 1.09003 * 109.47011 * 240.00504 * 1 2 3 27 27 H 1.08998 * 109.47054 * 359.97438 * 1 2 3 28 28 H 1.08998 * 109.46633 * 120.00138 * 1 2 3 29 29 H 0.97003 * 120.00445 * 0.02562 * 4 2 1 30 30 H 1.09001 * 109.46977 * 175.00249 * 7 5 4 31 31 H 1.08999 * 109.47084 * 55.00423 * 7 5 4 32 32 H 0.97003 * 120.00183 * 355.09432 * 10 8 7 33 33 H 1.08993 * 109.47497 * 305.12234 * 11 10 8 34 34 H 1.08997 * 109.47263 * 65.12775 * 11 10 8 35 35 H 0.97003 * 120.00068 * 179.97438 * 16 15 13 36 36 H 1.09002 * 117.50018 * 0.02562 * 21 12 11 37 37 H 1.09007 * 117.49648 * 145.02198 * 21 12 11 38 38 H 1.08995 * 117.50148 * 214.97840 * 22 12 11 39 39 H 1.08998 * 117.49919 * 359.97438 * 22 12 11 40 40 H 0.97000 * 120.00147 * 359.97438 * 24 23 5 41 41 H 0.97006 * 120.00190 * 180.02562 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1134 1.0503 0.0000 4 7 2.1809 -1.1671 0.0005 5 6 3.6459 -1.1672 0.0000 6 1 4.0095 -0.3250 0.5888 7 6 4.1562 -2.4742 0.6102 8 6 3.7580 -2.5396 2.0622 9 8 3.2155 -1.5897 2.5857 10 7 4.0049 -3.6540 2.7790 11 6 3.7224 -3.6779 4.2163 12 6 4.2071 -5.0025 4.8094 13 6 5.6965 -5.2281 4.7651 14 1 6.1376 -5.7603 3.9353 15 6 6.4959 -4.7549 5.7840 16 7 7.7969 -4.9428 5.7402 17 14 5.7313 -3.8473 7.2265 18 1 5.2608 -4.8295 8.2360 19 1 6.7442 -2.9522 7.8412 20 1 4.5810 -3.0387 6.7488 21 6 3.3022 -6.2246 4.6418 22 6 3.4438 -5.5590 6.0129 23 6 4.1477 -1.0443 -1.4157 24 7 5.4727 -1.0225 -1.6615 25 8 3.3593 -0.9649 -2.3338 26 1 -0.3633 -0.5138 0.8901 27 1 -0.3633 1.0277 0.0005 28 1 -0.3632 -0.5139 -0.8900 29 1 1.6960 -2.0072 0.0005 30 1 5.2425 -2.5132 0.5292 31 1 3.7214 -3.3188 0.0758 32 1 4.3733 -4.4388 2.3440 33 1 4.2403 -2.8511 4.7022 34 1 2.6489 -3.5790 4.3774 35 1 8.3594 -4.6097 6.4567 36 1 2.3617 -6.0853 4.1087 37 1 3.7841 -7.1920 4.4999 38 1 4.0187 -6.0886 6.7725 39 1 2.5966 -4.9813 6.3825 40 1 6.1033 -1.0856 -0.9271 41 1 5.7958 -0.9430 -2.5727 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001321279052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:40 Heat of formation + Delta-G solvation = -124.728507 kcal Electronic energy + Delta-G solvation = -24384.997802 eV Core-core repulsion = 20685.125334 eV Total energy + Delta-G solvation = -3699.872468 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.63819 -40.39589 -39.78708 -38.71070 -36.03831 -34.96135 -34.77107 -34.18709 -32.48843 -30.22394 -28.47913 -27.34965 -25.61118 -23.33135 -22.18970 -21.41550 -21.26601 -20.88978 -19.04925 -18.45415 -18.24925 -17.86552 -17.41298 -17.01916 -16.76786 -16.53108 -16.10087 -15.96351 -15.69347 -15.24020 -14.88060 -14.74552 -14.60409 -14.31172 -14.13935 -13.94499 -13.48828 -13.09857 -13.04585 -13.02202 -12.70239 -12.57313 -12.15966 -11.98208 -11.58189 -11.49113 -11.01906 -10.98342 -10.92979 -10.69778 -10.63114 -10.31949 -10.11506 -9.83216 -8.28343 -6.33599 1.34693 1.41272 1.45607 1.48612 1.63663 1.71932 2.10039 2.26615 2.37115 2.73554 3.07797 3.27257 3.46220 3.78258 3.93692 4.04402 4.06857 4.20775 4.39294 4.44128 4.45915 4.52404 4.56929 4.64052 4.67187 4.88648 4.90474 5.04185 5.13388 5.32979 5.34144 5.52096 5.62108 5.72549 5.85601 6.31024 6.34473 6.50999 6.72958 6.78228 7.22378 7.27484 7.36498 7.38686 8.85938 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.019032 B = 0.003860 C = 0.003604 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1470.840088 B = 7251.248422 C = 7767.539657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.510 3.490 3 O -0.602 6.602 4 N -0.694 5.694 5 C 0.144 3.856 6 H 0.100 0.900 7 C -0.134 4.134 8 C 0.506 3.494 9 O -0.581 6.581 10 N -0.698 5.698 11 C 0.166 3.834 12 C -0.040 4.040 13 C -0.474 4.474 14 H 0.051 0.949 15 C 0.030 3.970 16 N -0.943 5.943 17 Si 0.924 3.076 18 H -0.266 1.266 19 H -0.306 1.306 20 H -0.247 1.247 21 C -0.147 4.147 22 C -0.200 4.200 23 C 0.512 3.488 24 N -0.831 5.831 25 O -0.575 6.575 26 H 0.107 0.893 27 H 0.088 0.912 28 H 0.112 0.888 29 H 0.416 0.584 30 H 0.142 0.858 31 H 0.137 0.863 32 H 0.413 0.587 33 H 0.033 0.967 34 H 0.056 0.944 35 H 0.263 0.737 36 H 0.106 0.894 37 H 0.086 0.914 38 H 0.075 0.925 39 H 0.096 0.904 40 H 0.417 0.583 41 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.360 1.548 -12.132 16.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.300 3.700 3 O -0.484 6.484 4 N -0.345 5.345 5 C 0.033 3.967 6 H 0.118 0.882 7 C -0.175 4.175 8 C 0.293 3.707 9 O -0.462 6.462 10 N -0.348 5.348 11 C 0.041 3.959 12 C -0.041 4.041 13 C -0.511 4.511 14 H 0.069 0.931 15 C -0.169 4.169 16 N -0.583 5.583 17 Si 0.751 3.249 18 H -0.191 1.191 19 H -0.234 1.234 20 H -0.171 1.171 21 C -0.184 4.184 22 C -0.238 4.238 23 C 0.295 3.705 24 N -0.396 5.396 25 O -0.454 6.454 26 H 0.125 0.875 27 H 0.107 0.893 28 H 0.130 0.870 29 H 0.253 0.747 30 H 0.160 0.840 31 H 0.155 0.845 32 H 0.249 0.751 33 H 0.052 0.948 34 H 0.075 0.925 35 H 0.072 0.928 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.094 0.906 39 H 0.114 0.886 40 H 0.249 0.751 41 H 0.244 0.756 Dipole moment (debyes) X Y Z Total from point charges -10.782 3.003 -12.096 16.480 hybrid contribution 0.922 -0.186 0.932 1.324 sum -9.860 2.817 -11.165 15.159 Atomic orbital electron populations 1.21893 0.88179 1.06015 1.06188 1.21538 0.92463 0.82800 0.73243 1.90657 1.72207 1.33280 1.52225 1.45443 1.05193 1.09527 1.74326 1.20478 0.83034 1.00632 0.92506 0.88233 1.21956 1.06036 0.97895 0.91565 1.20839 0.78418 0.82034 0.89387 1.90726 1.44356 1.37722 1.73394 1.45761 1.64287 1.15773 1.08933 1.20827 0.97690 0.96678 0.80657 1.19493 0.92548 0.91900 1.00135 1.20366 0.89072 1.34911 1.06798 0.93074 1.25621 0.94711 0.96076 1.00458 1.69998 1.05332 1.48283 1.34646 0.86135 0.78654 0.79346 0.80744 1.19141 1.23413 1.17098 1.22876 1.00542 0.96861 0.98161 1.23027 1.02729 1.05673 0.92357 1.21034 0.83519 0.74852 0.91119 1.43694 1.06226 1.75595 1.14117 1.90707 1.56637 1.51051 1.46992 0.87463 0.89272 0.86973 0.74712 0.83999 0.84510 0.75073 0.94837 0.92545 0.92777 0.87551 0.89591 0.90647 0.88576 0.75118 0.75640 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.91 10.32 71.24 0.74 -2.17 16 2 C 0.51 14.40 7.77 87.66 0.68 15.08 16 3 O -0.60 -22.92 16.75 -3.03 -0.05 -22.97 16 4 N -0.69 -16.34 3.88 -446.10 -1.73 -18.07 16 5 C 0.14 3.32 1.94 44.24 0.09 3.40 16 6 H 0.10 2.88 7.31 -2.38 -0.02 2.86 16 7 C -0.13 -2.35 5.19 29.85 0.15 -2.19 16 8 C 0.51 13.96 7.64 87.66 0.67 14.63 16 9 O -0.58 -21.04 15.46 -3.02 -0.05 -21.08 16 10 N -0.70 -20.39 5.45 -463.06 -2.53 -22.91 16 11 C 0.17 6.02 5.21 86.38 0.45 6.47 16 12 C -0.04 -1.53 0.85 -52.93 -0.04 -1.58 16 13 C -0.47 -23.20 9.30 25.60 0.24 -22.96 16 14 H 0.05 2.73 8.06 -2.91 -0.02 2.71 16 15 C 0.03 1.57 5.47 84.66 0.46 2.04 16 16 N -0.94 -54.74 13.96 21.45 0.30 -54.44 16 17 Si 0.92 42.49 24.78 68.60 1.70 44.19 16 18 H -0.27 -11.69 7.01 99.48 0.70 -11.00 16 19 H -0.31 -14.59 7.11 99.48 0.71 -13.88 16 20 H -0.25 -10.76 5.96 99.48 0.59 -10.17 16 21 C -0.15 -4.65 9.96 30.62 0.30 -4.35 16 22 C -0.20 -7.15 7.60 30.62 0.23 -6.92 16 23 C 0.51 11.69 7.46 87.66 0.65 12.34 16 24 N -0.83 -11.69 8.74 -173.54 -1.52 -13.21 16 25 O -0.57 -17.65 17.16 -3.02 -0.05 -17.70 16 26 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 27 H 0.09 1.62 8.12 -2.39 -0.02 1.60 16 28 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 29 H 0.42 7.23 8.60 -92.71 -0.80 6.43 16 30 H 0.14 1.76 7.43 -2.39 -0.02 1.74 16 31 H 0.14 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.41 10.57 8.45 -92.71 -0.78 9.78 16 33 H 0.03 1.43 6.73 -2.39 -0.02 1.42 16 34 H 0.06 1.91 8.09 -2.39 -0.02 1.89 16 35 H 0.26 14.67 8.31 -92.71 -0.77 13.89 16 36 H 0.11 2.71 8.14 -2.39 -0.02 2.69 16 37 H 0.09 2.78 8.14 -2.38 -0.02 2.76 16 38 H 0.07 2.94 7.09 -2.39 -0.02 2.93 16 39 H 0.10 3.03 8.14 -2.39 -0.02 3.01 16 40 H 0.42 3.76 8.19 -92.71 -0.76 3.00 16 41 H 0.41 4.78 8.93 -92.70 -0.83 3.95 16 Total: -1.00 -80.89 349.12 -1.49 -82.37 By element: Atomic # 1 Polarization: 32.22 SS G_CDS: -2.19 Total: 30.03 kcal Atomic # 6 Polarization: 9.17 SS G_CDS: 4.62 Total: 13.79 kcal Atomic # 7 Polarization: -103.16 SS G_CDS: -5.47 Total: -108.64 kcal Atomic # 8 Polarization: -61.61 SS G_CDS: -0.15 Total: -61.76 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.70 Total: 44.19 kcal Total: -80.89 -1.49 -82.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001321279052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.354 kcal (2) G-P(sol) polarization free energy of solvation -80.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.375 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds