Wall clock time and date at job start Tue Mar 31 2020 03:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08994 * 110.53221 * 2 1 4 4 N 1.47317 * 110.59493 * 122.82999 * 2 1 3 5 5 C 1.34522 * 106.61777 * 118.68485 * 4 2 1 6 6 O 1.21537 * 123.77089 * 179.97438 * 5 4 2 7 7 N 1.33798 * 112.46095 * 359.97438 * 5 4 2 8 8 C 1.46499 * 124.17782 * 179.97438 * 7 5 4 9 9 C 1.53000 * 109.46840 * 90.02944 * 8 7 5 10 10 N 1.46901 * 109.46769 * 179.97438 * 9 8 7 11 11 C 1.47439 * 111.00392 * 69.87306 * 10 9 8 12 12 C 1.54314 * 107.23886 * 123.25418 * 11 10 9 13 13 C 1.55147 * 103.01489 * 22.28261 * 12 11 10 14 14 O 1.42904 * 110.98517 * 82.47856 * 13 12 11 15 15 C 1.50696 * 110.99147 * 206.25282 * 13 12 11 16 16 H 1.07997 * 120.00243 * 118.55217 * 15 13 12 17 17 C 1.37882 * 120.00439 * 298.54911 * 15 13 12 18 18 N 1.31512 * 119.99580 * 0.02562 * 17 15 13 19 19 Si 1.86799 * 120.00327 * 179.97438 * 17 15 13 20 20 H 1.48502 * 109.46772 * 60.00085 * 19 17 15 21 21 H 1.48499 * 109.46899 * 180.02562 * 19 17 15 22 22 H 1.48498 * 109.47148 * 300.00058 * 19 17 15 23 23 C 1.47849 * 111.00085 * 190.71420 * 10 9 8 24 24 C 1.34765 * 111.63852 * 0.23508 * 7 5 4 25 25 O 1.21243 * 127.15158 * 179.73580 * 24 7 5 26 26 H 1.08997 * 109.47170 * 298.62516 * 1 2 3 27 27 H 1.09003 * 109.47023 * 58.62773 * 1 2 3 28 28 H 1.09001 * 109.46877 * 178.62547 * 1 2 3 29 29 H 0.97003 * 126.68889 * 298.64003 * 4 2 1 30 30 H 1.09002 * 109.47391 * 330.02613 * 8 7 5 31 31 H 1.09001 * 109.46813 * 210.02670 * 8 7 5 32 32 H 1.09001 * 109.47194 * 299.99493 * 9 8 7 33 33 H 1.08992 * 109.47399 * 59.99666 * 9 8 7 34 34 H 1.09001 * 109.88858 * 242.66568 * 11 10 9 35 35 H 1.09005 * 109.88985 * 3.68918 * 11 10 9 36 36 H 1.08996 * 110.71197 * 140.66376 * 12 11 10 37 37 H 1.09004 * 110.70891 * 263.90659 * 12 11 10 38 38 H 0.96697 * 114.00641 * 61.45588 * 14 13 12 39 39 H 0.97008 * 120.00270 * 180.02562 * 18 17 15 40 40 H 1.08999 * 110.36998 * 332.46630 * 23 10 9 41 41 H 1.08999 * 110.37150 * 94.79905 * 23 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9123 1.0207 0.0000 4 7 2.0482 -0.7476 1.1588 5 6 2.7628 -1.7751 0.6654 6 8 3.3327 -2.5956 1.3575 7 7 2.7759 -1.7929 -0.6724 8 6 3.4761 -2.7985 -1.4752 9 6 2.5355 -3.9721 -1.7560 10 7 3.2374 -4.9802 -2.5616 11 6 4.2827 -5.6548 -1.7703 12 6 3.9831 -7.1680 -1.8124 13 6 3.1161 -7.3171 -3.0904 14 8 3.9353 -7.3907 -4.2589 15 6 2.2117 -8.5185 -2.9920 16 1 1.1397 -8.3912 -3.0210 17 6 2.7529 -9.7803 -2.8650 18 7 4.0584 -9.9352 -2.8292 19 14 1.6318 -11.2694 -2.7424 20 1 0.7936 -11.3599 -3.9649 21 1 2.4545 -12.4990 -2.6134 22 1 0.7562 -11.1330 -1.5508 23 6 2.2970 -6.0026 -3.0679 24 6 2.0702 -0.7681 -1.1899 25 8 1.9014 -0.5140 -2.3634 26 1 -0.3633 0.4923 0.9020 27 1 -0.3633 0.5350 -0.8775 28 1 -0.3633 -1.0274 -0.0247 29 1 1.9031 -0.5392 2.0950 30 1 4.3496 -3.1554 -0.9295 31 1 3.7937 -2.3537 -2.4183 32 1 2.2179 -4.4169 -0.8130 33 1 1.6621 -3.6152 -2.3017 34 1 5.2624 -5.4584 -2.2061 35 1 4.2568 -5.2978 -0.7407 36 1 4.9057 -7.7412 -1.9037 37 1 3.4232 -7.4748 -0.9290 38 1 4.5363 -8.1481 -4.2709 39 1 4.4392 -10.8230 -2.7403 40 1 1.4436 -6.0987 -2.3966 41 1 1.9630 -5.7462 -4.0733 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001326797102.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:04 Heat of formation + Delta-G solvation = -82.684884 kcal Electronic energy + Delta-G solvation = -24757.892326 eV Core-core repulsion = 21059.843006 eV Total energy + Delta-G solvation = -3698.049320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.59016 -38.74891 -38.47714 -36.50414 -35.76459 -34.37972 -32.11141 -31.06859 -30.56729 -28.31402 -27.70154 -25.20166 -24.46940 -23.15616 -22.43642 -20.67768 -19.78911 -19.48155 -18.20151 -17.29899 -17.01076 -16.64332 -15.77477 -15.73370 -15.23602 -14.86428 -14.76553 -14.60922 -14.29511 -13.90413 -13.60503 -13.41177 -13.17948 -12.94936 -12.46233 -12.41283 -11.97030 -11.83081 -11.51532 -11.23034 -11.13509 -10.94150 -10.91669 -10.68906 -10.43661 -10.34073 -10.27161 -9.90973 -9.82485 -9.73430 -9.15967 -8.57615 -8.06209 -7.66309 -6.18981 -4.27257 1.41525 2.00934 2.82554 2.85750 3.25128 3.29938 3.32805 3.66337 4.29226 4.30744 4.44408 4.62147 4.86416 5.04660 5.07191 5.16534 5.17572 5.37496 5.42192 5.56058 5.56993 5.73153 5.85705 5.95289 6.08306 6.17335 6.20754 6.48747 6.49800 6.67821 6.87403 6.88478 7.10125 7.17521 7.43879 7.51357 7.60549 7.70991 7.84011 7.93038 8.18398 8.74523 9.41187 9.54355 10.87968 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.025936 B = 0.003371 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1079.335266 B = 8303.841138 C = 8359.689506 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.091 3.909 3 H 0.127 0.873 4 N -0.729 5.729 5 C 0.700 3.300 6 O -0.537 6.537 7 N -0.573 5.573 8 C 0.123 3.877 9 C 0.039 3.961 10 N -0.523 5.523 11 C 0.037 3.963 12 C -0.143 4.143 13 C 0.252 3.748 14 O -0.578 6.578 15 C -0.538 4.538 16 H 0.060 0.940 17 C 0.072 3.928 18 N -0.894 5.894 19 Si 0.900 3.100 20 H -0.275 1.275 21 H -0.286 1.286 22 H -0.277 1.277 23 C 0.061 3.939 24 C 0.522 3.478 25 O -0.461 6.461 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.068 0.932 29 H 0.439 0.561 30 H 0.097 0.903 31 H 0.103 0.897 32 H 0.038 0.962 33 H 0.071 0.929 34 H 0.067 0.933 35 H 0.041 0.959 36 H 0.078 0.922 37 H 0.055 0.945 38 H 0.377 0.623 39 H 0.267 0.733 40 H 0.046 0.954 41 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.247 19.725 7.962 21.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.018 4.018 3 H 0.144 0.856 4 N -0.394 5.394 5 C 0.400 3.600 6 O -0.409 6.409 7 N -0.320 5.320 8 C 0.002 3.998 9 C -0.091 4.091 10 N -0.247 5.247 11 C -0.090 4.090 12 C -0.182 4.182 13 C 0.212 3.788 14 O -0.386 6.386 15 C -0.576 4.576 16 H 0.078 0.922 17 C -0.130 4.130 18 N -0.533 5.533 19 Si 0.727 3.273 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.202 1.202 23 C -0.066 4.066 24 C 0.308 3.692 25 O -0.330 6.330 26 H 0.097 0.903 27 H 0.103 0.897 28 H 0.087 0.913 29 H 0.283 0.717 30 H 0.115 0.885 31 H 0.122 0.878 32 H 0.056 0.944 33 H 0.090 0.910 34 H 0.085 0.915 35 H 0.059 0.941 36 H 0.097 0.903 37 H 0.074 0.926 38 H 0.226 0.774 39 H 0.077 0.923 40 H 0.065 0.935 41 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -3.928 20.022 7.047 21.586 hybrid contribution -0.714 -1.678 1.494 2.357 sum -4.643 18.344 8.540 20.760 Atomic orbital electron populations 1.21964 0.90659 1.04125 1.04247 1.22079 0.97662 0.98010 0.84082 0.85594 1.45603 1.55182 1.29503 1.09125 1.15931 0.79955 0.82206 0.81880 1.91048 1.48128 1.41030 1.60730 1.46439 1.49399 1.28322 1.07799 1.21767 0.95199 0.87382 0.95484 1.22464 0.96463 0.93275 0.96905 1.63525 1.12730 1.14299 1.34194 1.22943 0.95424 0.95973 0.94653 1.23244 1.02125 0.92197 1.00650 1.19514 0.87086 0.90188 0.82035 1.86141 1.56792 1.52046 1.43628 1.21501 0.93421 0.91440 1.51245 0.92198 1.24992 0.95245 0.99091 0.93695 1.69729 1.10057 1.23606 1.49932 0.86535 0.80514 0.81496 0.78740 1.20035 1.21132 1.20219 1.22987 0.93693 0.90867 0.99024 1.20873 0.77537 0.80724 0.90026 1.90835 1.56502 1.69131 1.16540 0.90313 0.89657 0.91290 0.71703 0.88496 0.87828 0.94407 0.91038 0.91468 0.94060 0.90331 0.92631 0.77414 0.92322 0.93526 0.90924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.76 9.65 37.16 0.36 -0.40 16 2 C 0.09 0.59 4.31 -68.20 -0.29 0.29 16 3 H 0.13 0.48 8.14 -51.93 -0.42 0.06 16 4 N -0.73 -5.47 6.24 -59.19 -0.37 -5.84 16 5 C 0.70 8.64 8.62 -88.02 -0.76 7.88 16 6 O -0.54 -8.75 17.48 5.33 0.09 -8.66 16 7 N -0.57 -7.14 2.60 -120.73 -0.31 -7.46 16 8 C 0.12 1.75 5.73 -4.04 -0.02 1.73 16 9 C 0.04 0.65 4.86 -3.82 -0.02 0.63 16 10 N -0.52 -10.38 5.16 -231.26 -1.19 -11.57 16 11 C 0.04 0.76 6.21 -2.84 -0.02 0.74 16 12 C -0.14 -3.38 5.37 -24.91 -0.13 -3.51 16 13 C 0.25 6.38 0.87 -89.64 -0.08 6.30 16 14 O -0.58 -15.32 13.16 -35.23 -0.46 -15.79 16 15 C -0.54 -14.62 8.27 -34.44 -0.28 -14.91 16 16 H 0.06 1.61 7.79 -52.49 -0.41 1.21 16 17 C 0.07 1.94 5.29 -17.82 -0.09 1.84 16 18 N -0.89 -24.11 10.75 55.43 0.60 -23.51 16 19 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 23 C 0.06 1.37 5.86 -2.30 -0.01 1.35 16 24 C 0.52 5.73 7.67 -10.56 -0.08 5.64 16 25 O -0.46 -6.33 17.75 5.59 0.10 -6.23 16 26 H 0.08 0.23 8.14 -51.93 -0.42 -0.20 16 27 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.44 2.14 8.96 -40.82 -0.37 1.78 16 30 H 0.10 1.43 6.86 -51.93 -0.36 1.07 16 31 H 0.10 1.46 8.00 -51.93 -0.42 1.04 16 32 H 0.04 0.67 7.96 -51.93 -0.41 0.26 16 33 H 0.07 1.17 8.07 -51.93 -0.42 0.75 16 34 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 35 H 0.04 0.78 6.91 -51.93 -0.36 0.42 16 36 H 0.08 1.95 7.54 -51.93 -0.39 1.56 16 37 H 0.05 1.36 8.03 -51.93 -0.42 0.94 16 38 H 0.38 10.01 7.56 45.56 0.34 10.36 16 39 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 40 H 0.05 1.01 7.70 -51.93 -0.40 0.61 16 41 H 0.07 1.64 8.14 -51.93 -0.42 1.22 16 LS Contribution 339.24 15.07 5.11 5.11 Total: -1.00 -31.88 339.24 -8.17 -40.05 By element: Atomic # 1 Polarization: 15.74 SS G_CDS: -5.27 Total: 10.47 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.44 Total: 7.59 kcal Atomic # 7 Polarization: -47.11 SS G_CDS: -1.28 Total: -48.39 kcal Atomic # 8 Polarization: -30.41 SS G_CDS: -0.27 Total: -30.68 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -31.88 -8.17 -40.05 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001326797102.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.637 kcal (2) G-P(sol) polarization free energy of solvation -31.876 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.513 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.685 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds