Wall clock time and date at job start Tue Mar 31 2020 04:52:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.42901 * 114.00470 * 2 1 4 4 C 1.52998 * 109.47482 * 179.97438 * 3 2 1 5 5 N 1.46504 * 109.46894 * 66.79763 * 4 3 2 6 6 C 1.36932 * 119.99852 * 93.33453 * 5 4 3 7 7 H 1.07992 * 120.00018 * 324.55910 * 6 5 4 8 8 C 1.38795 * 119.99779 * 144.55713 * 6 5 4 9 9 N 1.31567 * 120.00060 * 161.19759 * 8 6 5 10 10 Si 1.86806 * 120.00189 * 341.47312 * 8 6 5 11 11 H 1.48500 * 109.47220 * 87.75526 * 10 8 6 12 12 H 1.48504 * 109.47010 * 207.75830 * 10 8 6 13 13 H 1.48505 * 109.46967 * 327.75777 * 10 8 6 14 14 C 1.38224 * 119.99930 * 273.33242 * 5 4 3 15 15 N 1.31564 * 126.45903 * 277.07210 * 14 5 4 16 16 N 1.28420 * 110.50131 * 180.02562 * 15 14 5 17 17 N 1.28911 * 110.34647 * 0.02562 * 16 15 14 18 18 N 1.35435 * 126.45488 * 96.76404 * 14 5 4 19 19 C 1.46495 * 127.38930 * 359.96416 * 18 14 5 20 20 C 1.52998 * 109.47418 * 100.33167 * 19 18 14 21 21 H 1.09005 * 110.45735 * 50.41817 * 20 19 18 22 22 C 1.54512 * 110.51186 * 173.02410 * 20 19 18 23 23 C 1.54475 * 104.06131 * 118.64749 * 22 20 19 24 24 O 1.44422 * 104.80591 * 23.97498 * 23 22 20 25 25 C 1.44427 * 105.27831 * 319.49164 * 24 23 22 26 26 H 1.09001 * 109.47199 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47420 * 300.00050 * 1 2 3 28 28 H 1.09002 * 109.46905 * 60.00099 * 1 2 3 29 29 H 1.09006 * 109.46662 * 59.99613 * 3 2 1 30 30 H 1.09001 * 109.46352 * 300.00044 * 3 2 1 31 31 H 1.09006 * 109.46885 * 306.79874 * 4 3 2 32 32 H 1.08992 * 109.46960 * 186.79845 * 4 3 2 33 33 H 0.96997 * 119.99783 * 179.97438 * 9 8 6 34 34 H 1.09002 * 109.47001 * 220.33354 * 19 18 14 35 35 H 1.09004 * 109.47195 * 340.32925 * 19 18 14 36 36 H 1.09002 * 110.51131 * 237.28740 * 22 20 19 37 37 H 1.08996 * 110.51236 * 359.86038 * 22 20 19 38 38 H 1.08998 * 110.37596 * 142.81000 * 23 22 20 39 39 H 1.09004 * 110.36858 * 265.14609 * 23 22 20 40 40 H 1.09004 * 110.36555 * 281.68255 * 25 24 23 41 41 H 1.08995 * 110.37539 * 159.34160 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0103 1.3054 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9798 0.6033 -1.2686 6 6 4.3391 1.4202 -2.3072 7 1 3.8173 2.3521 -2.4666 8 6 5.3740 1.0504 -3.1549 9 7 5.4868 1.6122 -4.3393 10 14 6.6022 -0.2505 -2.6175 11 1 6.0903 -1.5957 -2.9831 12 1 7.9020 -0.0143 -3.2957 13 1 6.7906 -0.1756 -1.1464 14 6 4.0363 -0.7697 -1.4177 15 7 5.0174 -1.5580 -1.0343 16 7 4.7514 -2.7805 -1.3240 17 7 3.6031 -2.8642 -1.9037 18 7 3.0897 -1.5577 -1.9809 19 6 1.8073 -1.1381 -2.5516 20 6 1.9239 -1.0744 -4.0758 21 1 2.3499 -1.9994 -4.4644 22 6 0.5426 -0.8047 -4.7136 23 6 0.7257 0.5404 -5.4507 24 8 2.1446 0.6324 -5.7038 25 6 2.7781 0.1398 -4.5030 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5138 0.8899 28 1 -0.3633 0.5138 -0.8900 29 1 1.6886 1.8464 0.8900 30 1 1.6886 1.8463 -0.8900 31 1 3.8487 0.5423 0.8238 32 1 3.9782 2.1731 0.1223 33 1 6.2102 1.3540 -4.9316 34 1 1.0347 -1.8560 -2.2760 35 1 1.5427 -0.1536 -2.1659 36 1 0.2869 -1.5952 -5.4193 37 1 -0.2237 -0.7193 -3.9432 38 1 0.1722 0.5370 -6.3897 39 1 0.3985 1.3666 -4.8194 40 1 2.7656 0.9046 -3.7265 41 1 3.8011 -0.1714 -4.7140 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332540149.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:52:28 Heat of formation + Delta-G solvation = 69.318073 kcal Electronic energy + Delta-G solvation = -27143.028566 eV Core-core repulsion = 23483.863340 eV Total energy + Delta-G solvation = -3659.165226 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.05713 -38.98191 -38.02647 -36.20311 -34.68782 -32.34100 -31.69333 -30.96700 -29.10952 -28.79718 -26.37832 -25.84190 -24.51689 -22.77474 -22.55651 -21.87352 -20.38135 -20.00963 -18.29465 -16.87934 -16.27549 -16.12833 -15.83545 -15.67446 -15.26751 -15.00896 -14.75468 -14.45891 -14.23588 -13.67840 -13.43904 -12.90316 -12.56651 -12.42733 -12.29912 -12.22321 -11.83839 -11.76251 -11.54859 -11.26463 -11.04883 -10.95497 -10.84524 -10.66245 -10.58081 -10.29588 -10.21328 -9.64537 -9.55900 -9.37059 -9.15510 -8.80387 -8.58322 -7.72431 -6.36773 -3.99584 1.95082 2.59229 3.06305 3.52294 3.57922 3.86468 3.93317 4.23863 4.41179 4.47768 4.80794 4.91789 4.96460 5.13888 5.22528 5.25048 5.29533 5.47559 5.53733 5.54901 5.58320 5.61762 5.64661 5.69349 5.79511 5.88962 5.97319 6.04128 6.08310 6.15714 6.32545 6.37203 6.42991 6.69646 6.91845 7.07177 7.27631 7.43089 7.64781 7.84125 8.49552 9.19392 9.37184 9.46655 10.67733 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.011638 B = 0.010429 C = 0.007986 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.233485 B = 2684.130114 C = 3505.358535 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.387 6.387 3 C 0.035 3.965 4 C 0.148 3.852 5 N -0.505 5.505 6 C -0.313 4.313 7 H 0.104 0.896 8 C 0.055 3.945 9 N -0.856 5.856 10 Si 0.889 3.111 11 H -0.291 1.291 12 H -0.308 1.308 13 H -0.243 1.243 14 C 0.509 3.491 15 N -0.362 5.362 16 N -0.054 5.054 17 N -0.117 5.117 18 N -0.373 5.373 19 C 0.153 3.847 20 C -0.151 4.151 21 H 0.081 0.919 22 C -0.143 4.143 23 C 0.045 3.955 24 O -0.372 6.372 25 C 0.058 3.942 26 H 0.079 0.921 27 H 0.038 0.962 28 H 0.039 0.961 29 H 0.050 0.950 30 H 0.057 0.943 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.273 0.727 34 H 0.084 0.916 35 H 0.111 0.889 36 H 0.074 0.926 37 H 0.073 0.927 38 H 0.082 0.918 39 H 0.054 0.946 40 H 0.105 0.895 41 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.087 0.370 4.193 13.747 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.306 6.306 3 C -0.043 4.043 4 C 0.023 3.977 5 N -0.228 5.228 6 C -0.440 4.440 7 H 0.122 0.878 8 C -0.153 4.153 9 N -0.491 5.491 10 Si 0.721 3.279 11 H -0.219 1.219 12 H -0.237 1.237 13 H -0.167 1.167 14 C 0.148 3.852 15 N -0.222 5.222 16 N -0.050 5.050 17 N -0.105 5.105 18 N -0.174 5.174 19 C 0.029 3.971 20 C -0.171 4.171 21 H 0.099 0.901 22 C -0.182 4.182 23 C -0.033 4.033 24 O -0.290 6.290 25 C -0.018 4.018 26 H 0.098 0.902 27 H 0.057 0.943 28 H 0.058 0.942 29 H 0.068 0.932 30 H 0.075 0.925 31 H 0.078 0.922 32 H 0.117 0.883 33 H 0.083 0.917 34 H 0.103 0.897 35 H 0.129 0.871 36 H 0.093 0.907 37 H 0.092 0.908 38 H 0.100 0.900 39 H 0.072 0.928 40 H 0.122 0.878 41 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -12.148 -0.854 3.986 12.814 hybrid contribution -0.277 0.078 -0.039 0.291 sum -12.425 -0.776 3.948 13.060 Atomic orbital electron populations 1.22706 0.82104 1.02179 0.99755 1.87982 1.18805 1.28650 1.95136 1.23390 0.96523 0.84357 1.00067 1.21318 0.90205 0.99824 0.86386 1.40856 1.74539 0.94614 1.12751 1.18697 1.15411 1.03943 1.05922 0.87833 1.25485 0.96642 0.97912 0.95240 1.69835 1.31153 1.42432 1.05707 0.86616 0.80406 0.79769 0.81133 1.21880 1.23701 1.16736 1.21736 0.85291 0.88370 0.89764 1.74856 1.22624 0.97300 1.27406 1.77799 1.06814 1.12464 1.07918 1.82215 1.07891 0.98608 1.21741 1.52342 1.16186 1.05803 1.43094 1.21846 0.81121 1.02205 0.91910 1.23167 0.97216 1.02236 0.94479 0.90097 1.22897 0.96390 0.98945 0.99939 1.23288 0.85012 0.95484 0.99508 1.89160 1.16165 1.85868 1.37827 1.24091 0.96162 0.93757 0.87786 0.90232 0.94346 0.94250 0.93215 0.92514 0.92217 0.88342 0.91664 0.89731 0.87082 0.90737 0.90788 0.89972 0.92783 0.87770 0.88980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.31 10.47 101.05 1.06 1.37 16 2 O -0.39 -5.64 7.47 -35.23 -0.26 -5.90 16 3 C 0.04 0.48 5.80 37.16 0.22 0.70 16 4 C 0.15 2.49 6.09 -4.04 -0.02 2.46 16 5 N -0.51 -10.73 2.21 -116.59 -0.26 -10.99 16 6 C -0.31 -7.38 6.89 -15.07 -0.10 -7.48 16 7 H 0.10 2.51 8.03 -52.49 -0.42 2.09 16 8 C 0.06 1.44 3.74 -17.46 -0.07 1.37 16 9 N -0.86 -23.22 12.99 55.49 0.72 -22.50 16 10 Si 0.89 23.48 23.80 -169.99 -4.05 19.44 16 11 H -0.29 -8.21 6.02 56.52 0.34 -7.87 16 12 H -0.31 -8.28 7.11 56.52 0.40 -7.87 16 13 H -0.24 -6.51 6.59 56.52 0.37 -6.13 16 14 C 0.51 11.58 4.85 -320.36 -1.55 10.03 16 15 N -0.36 -9.08 7.45 30.10 0.22 -8.85 16 16 N -0.05 -1.32 12.72 60.35 0.77 -0.55 16 17 N -0.12 -2.65 13.93 60.35 0.84 -1.81 16 18 N -0.37 -7.82 3.52 -61.85 -0.22 -8.04 16 19 C 0.15 2.56 4.54 -4.05 -0.02 2.54 16 20 C -0.15 -2.60 3.34 -89.05 -0.30 -2.90 16 21 H 0.08 1.50 8.14 -51.93 -0.42 1.08 16 22 C -0.14 -1.88 6.74 -25.16 -0.17 -2.05 16 23 C 0.04 0.65 7.63 37.93 0.29 0.94 16 24 O -0.37 -7.57 11.65 -35.23 -0.41 -7.98 16 25 C 0.06 1.21 5.63 37.93 0.21 1.43 16 26 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.04 0.35 8.14 -51.93 -0.42 -0.08 16 28 H 0.04 0.37 8.14 -51.93 -0.42 -0.05 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.79 8.12 -51.93 -0.42 0.37 16 31 H 0.06 1.03 8.07 -51.93 -0.42 0.61 16 32 H 0.10 1.50 8.01 -51.93 -0.42 1.08 16 33 H 0.27 7.33 8.31 -40.82 -0.34 6.99 16 34 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.11 1.81 5.22 -51.93 -0.27 1.54 16 36 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 37 H 0.07 0.78 7.73 -51.93 -0.40 0.38 16 38 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 39 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 40 H 0.10 2.32 4.83 -51.93 -0.25 2.07 16 41 H 0.09 2.31 6.48 -51.93 -0.34 1.97 16 LS Contribution 319.25 15.07 4.81 4.81 Total: -1.00 -30.90 319.25 -4.26 -35.16 By element: Atomic # 1 Polarization: 4.78 SS G_CDS: -5.97 Total: -1.19 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.46 Total: 8.41 kcal Atomic # 7 Polarization: -54.82 SS G_CDS: 2.08 Total: -52.74 kcal Atomic # 8 Polarization: -13.21 SS G_CDS: -0.67 Total: -13.88 kcal Atomic # 14 Polarization: 23.48 SS G_CDS: -4.05 Total: 19.44 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -30.90 -4.26 -35.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332540149.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 104.475 kcal (2) G-P(sol) polarization free energy of solvation -30.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.574 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.256 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.318 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds