Wall clock time and date at job start Tue Mar 31 2020 04:00:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47586 * 2 1 4 4 C 1.37564 * 123.92583 * 270.55046 * 3 2 1 5 5 O 1.21237 * 128.46211 * 3.10940 * 4 3 2 6 6 C 1.51152 * 104.34496 * 183.24823 * 4 3 2 7 7 H 1.09006 * 111.62572 * 111.91130 * 6 4 3 8 8 C 1.53206 * 111.05701 * 237.07800 * 6 4 3 9 9 N 1.47096 * 108.57551 * 165.11009 * 8 6 4 10 10 C 1.46894 * 111.00025 * 169.90378 * 9 8 6 11 11 C 1.53001 * 109.47132 * 75.91554 * 10 9 8 12 12 H 1.09000 * 109.47312 * 55.26208 * 11 10 9 13 13 O 1.42894 * 109.47052 * 295.25985 * 11 10 9 14 14 C 1.50701 * 109.47105 * 175.26012 * 11 10 9 15 15 H 1.08007 * 119.99895 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00440 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00611 * 180.02562 * 16 14 11 18 18 Si 1.86808 * 119.99552 * 359.97438 * 16 14 11 19 19 H 1.48504 * 109.47028 * 90.00387 * 18 16 14 20 20 H 1.48497 * 109.46895 * 209.99998 * 18 16 14 21 21 H 1.48499 * 109.47369 * 330.00374 * 18 16 14 22 22 C 1.46738 * 112.48397 * 294.95599 * 9 8 6 23 23 C 1.53769 * 109.78426 * 63.74568 * 22 9 8 24 24 N 1.46573 * 106.94819 * 309.95682 * 23 22 9 25 25 C 1.33342 * 130.29253 * 230.70394 * 24 23 22 26 26 O 1.21535 * 124.05685 * 348.61021 * 25 24 23 27 27 H 1.09007 * 109.46697 * 59.99667 * 1 2 3 28 28 H 1.08992 * 109.47228 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46774 * 300.00220 * 1 2 3 30 30 H 1.09003 * 109.46774 * 239.99780 * 2 1 3 31 31 H 1.09001 * 109.47148 * 120.00840 * 2 1 3 32 32 H 1.09005 * 109.61673 * 284.83246 * 8 6 4 33 33 H 1.08997 * 109.61948 * 45.19542 * 8 6 4 34 34 H 1.09011 * 109.47106 * 195.91531 * 10 9 8 35 35 H 1.08994 * 109.47415 * 315.91362 * 10 9 8 36 36 H 0.96704 * 114.00249 * 299.99376 * 13 11 10 37 37 H 0.96996 * 120.00180 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.42030 * 183.84547 * 22 9 8 39 39 H 1.08997 * 109.41461 * 303.65101 * 22 9 8 40 40 H 1.09002 * 109.96102 * 69.31405 * 23 22 9 41 41 H 1.09001 * 109.96233 * 190.50783 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2641 2.1086 -1.1414 5 8 2.0832 1.7847 -2.2956 6 6 2.8210 3.4201 -0.6370 7 1 3.8730 3.5367 -0.8978 8 6 1.9834 4.6020 -1.1356 9 7 2.3357 5.7921 -0.3461 10 6 1.7461 7.0044 -0.9297 11 6 0.2518 7.0521 -0.6049 12 1 0.1120 6.9812 0.4738 13 8 -0.4097 5.9585 -1.2439 14 6 -0.3293 8.3505 -1.1024 15 1 0.3041 9.0700 -1.6001 16 6 -1.6691 8.6206 -0.9213 17 7 -2.1763 9.7535 -1.3559 18 14 -2.7644 7.3764 -0.0599 19 1 -2.7673 7.6468 1.4004 20 1 -4.1485 7.4871 -0.5865 21 1 -2.2482 6.0064 -0.3085 22 6 1.9676 5.6567 1.0679 23 6 2.7692 4.5106 1.7068 24 7 2.6244 3.3462 0.8284 25 6 2.2704 2.0920 1.1104 26 8 2.1862 1.6456 2.2377 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 2.1984 4.7845 -2.1886 33 1 0.9240 4.3778 -1.0119 34 1 2.2369 7.8841 -0.5128 35 1 1.8827 6.9906 -2.0110 36 1 -0.3271 5.9575 -2.2074 37 1 -3.1189 9.9435 -1.2282 38 1 2.1871 6.5877 1.5903 39 1 0.9020 5.4410 1.1458 40 1 3.8201 4.7896 1.7844 41 1 2.3708 4.2840 2.6958 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001333117550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:48 Heat of formation + Delta-G solvation = -67.433219 kcal Electronic energy + Delta-G solvation = -25762.097046 eV Core-core repulsion = 22064.709088 eV Total energy + Delta-G solvation = -3697.387958 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -42.38121 -38.76781 -38.63152 -36.41362 -35.82514 -34.33959 -32.39011 -32.18554 -30.61953 -29.22797 -27.22398 -25.15614 -24.47981 -23.09808 -22.77250 -21.26069 -20.51935 -19.44096 -17.52958 -17.45166 -17.15404 -16.45683 -15.79303 -15.49057 -15.36085 -14.95662 -14.89602 -14.43807 -14.36282 -14.16980 -14.09073 -13.85958 -13.44066 -13.17818 -12.87272 -12.57474 -12.37679 -12.03449 -11.69610 -11.51138 -11.44594 -11.15287 -11.06942 -11.00840 -10.71846 -10.51888 -10.32448 -10.09063 -9.87343 -9.31663 -9.08160 -8.89478 -8.65192 -7.60057 -6.22776 -4.34745 1.53084 1.98179 2.88025 2.91750 3.29195 3.40187 3.63329 3.82514 4.30787 4.42231 4.42873 4.74310 4.82673 4.91623 5.00053 5.05533 5.10271 5.15106 5.24953 5.29657 5.51418 5.53000 5.60047 5.69330 5.72523 5.81902 5.95667 5.97024 5.98641 6.04923 6.22954 6.43269 6.58349 6.95223 7.05529 7.14470 7.23841 7.33602 7.53377 8.06364 8.16592 8.68918 8.85455 9.41460 10.87722 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.004979 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.730844 B = 5622.693233 C = 5944.767977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.118 3.882 3 N -0.590 5.590 4 C 0.535 3.465 5 O -0.458 6.458 6 C 0.089 3.911 7 H 0.133 0.867 8 C 0.055 3.945 9 N -0.539 5.539 10 C 0.041 3.959 11 C 0.160 3.840 12 H 0.058 0.942 13 O -0.582 6.582 14 C -0.565 4.565 15 H 0.074 0.926 16 C 0.086 3.914 17 N -0.890 5.890 18 Si 0.870 3.130 19 H -0.288 1.288 20 H -0.295 1.295 21 H -0.220 1.220 22 C 0.033 3.967 23 C 0.157 3.843 24 N -0.615 5.615 25 C 0.708 3.292 26 O -0.552 6.552 27 H 0.062 0.938 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.077 0.923 34 H 0.082 0.918 35 H 0.073 0.927 36 H 0.357 0.643 37 H 0.266 0.734 38 H 0.094 0.906 39 H 0.053 0.947 40 H 0.082 0.918 41 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.423 -15.402 2.738 18.798 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.003 4.003 3 N -0.338 5.338 4 C 0.322 3.678 5 O -0.326 6.326 6 C -0.019 4.019 7 H 0.150 0.850 8 C -0.074 4.074 9 N -0.263 5.263 10 C -0.086 4.086 11 C 0.102 3.898 12 H 0.076 0.924 13 O -0.389 6.389 14 C -0.603 4.603 15 H 0.092 0.908 16 C -0.119 4.119 17 N -0.527 5.527 18 Si 0.696 3.304 19 H -0.215 1.215 20 H -0.222 1.222 21 H -0.143 1.143 22 C -0.096 4.096 23 C 0.036 3.964 24 N -0.353 5.353 25 C 0.411 3.589 26 O -0.427 6.427 27 H 0.081 0.919 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.110 0.890 33 H 0.095 0.905 34 H 0.100 0.900 35 H 0.091 0.909 36 H 0.204 0.796 37 H 0.075 0.925 38 H 0.112 0.888 39 H 0.071 0.929 40 H 0.100 0.900 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 10.495 -15.804 3.412 19.275 hybrid contribution -1.445 -0.196 -0.109 1.463 sum 9.049 -16.000 3.303 18.676 Atomic orbital electron populations 1.22144 0.94620 1.02966 1.03107 1.21580 0.95399 0.79104 1.04258 1.47281 1.62964 1.15773 1.07825 1.21358 0.75604 0.86279 0.84543 1.90792 1.49427 1.75708 1.16713 1.22528 1.03155 0.94536 0.81698 0.84963 1.22418 0.98722 0.88074 0.98223 1.61822 1.59958 1.02959 1.01539 1.22853 0.95827 0.90302 0.99615 1.20458 0.88502 0.86614 0.94265 0.92429 1.86668 1.77979 1.51079 1.23135 1.21443 0.95383 1.02530 1.40917 0.90795 1.24996 0.98266 0.94840 0.93834 1.69948 1.13961 1.23640 1.45102 0.87048 0.78970 0.85498 0.78834 1.21469 1.22181 1.14294 1.22619 0.98667 0.98413 0.89898 1.21766 1.01249 0.81090 0.92280 1.47579 1.70768 1.08802 1.08185 1.15506 0.77978 0.81430 0.84029 1.90951 1.58428 1.73274 1.20079 0.91930 0.90675 0.91867 0.89140 0.88770 0.88994 0.90493 0.89976 0.90868 0.79649 0.92496 0.88809 0.92926 0.90019 0.88681 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.72 10.24 37.16 0.38 -1.34 16 2 C 0.12 1.20 6.49 -4.04 -0.03 1.18 16 3 N -0.59 -7.50 2.68 -120.33 -0.32 -7.82 16 4 C 0.53 6.94 7.77 -9.48 -0.07 6.87 16 5 O -0.46 -6.75 17.93 5.59 0.10 -6.65 16 6 C 0.09 1.06 4.01 -67.91 -0.27 0.79 16 7 H 0.13 1.33 8.14 -51.93 -0.42 0.90 16 8 C 0.05 0.75 4.45 -3.61 -0.02 0.73 16 9 N -0.54 -7.64 4.71 -233.97 -1.10 -8.75 16 10 C 0.04 0.69 5.17 -3.83 -0.02 0.67 16 11 C 0.16 3.32 1.82 -27.88 -0.05 3.27 16 12 H 0.06 1.26 5.64 -51.93 -0.29 0.96 16 13 O -0.58 -11.85 7.38 -35.23 -0.26 -12.11 16 14 C -0.56 -14.65 9.34 -34.44 -0.32 -14.98 16 15 H 0.07 2.08 7.99 -52.48 -0.42 1.66 16 16 C 0.09 2.37 5.47 -17.82 -0.10 2.27 16 17 N -0.89 -26.36 13.96 55.43 0.77 -25.59 16 18 Si 0.87 21.22 26.99 -169.99 -4.59 16.63 16 19 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 20 H -0.30 -7.35 7.11 56.52 0.40 -6.94 16 21 H -0.22 -5.25 5.31 56.52 0.30 -4.95 16 22 C 0.03 0.45 4.62 -3.51 -0.02 0.43 16 23 C 0.16 1.82 7.20 -3.60 -0.03 1.79 16 24 N -0.62 -7.95 3.05 -171.67 -0.52 -8.47 16 25 C 0.71 10.14 8.36 -88.68 -0.74 9.40 16 26 O -0.55 -9.30 17.35 5.33 0.09 -9.21 16 27 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 28 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16 29 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 30 H 0.09 0.79 8.11 -51.93 -0.42 0.37 16 31 H 0.09 0.90 7.84 -51.93 -0.41 0.50 16 32 H 0.09 1.18 7.88 -51.93 -0.41 0.77 16 33 H 0.08 1.25 5.97 -51.93 -0.31 0.94 16 34 H 0.08 1.40 8.14 -51.92 -0.42 0.97 16 35 H 0.07 1.21 7.82 -51.93 -0.41 0.80 16 36 H 0.36 6.55 9.04 45.56 0.41 6.96 16 37 H 0.27 7.45 8.31 -40.82 -0.34 7.11 16 38 H 0.09 1.18 8.09 -51.93 -0.42 0.76 16 39 H 0.05 0.86 6.66 -51.93 -0.35 0.52 16 40 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 41 H 0.09 1.07 8.08 -51.93 -0.42 0.65 16 LS Contribution 328.76 15.07 4.95 4.95 Total: -1.00 -32.12 328.76 -7.37 -39.48 By element: Atomic # 1 Polarization: 11.65 SS G_CDS: -5.21 Total: 6.44 kcal Atomic # 6 Polarization: 12.37 SS G_CDS: -1.28 Total: 11.09 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: -1.17 Total: -50.63 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.07 Total: -27.97 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -4.59 Total: 16.63 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -32.12 -7.37 -39.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333117550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.948 kcal (2) G-P(sol) polarization free energy of solvation -32.117 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.485 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.433 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds