Wall clock time and date at job start Tue Mar 31 2020 04:00:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46493 * 109.47586 * 2 1 4 4 C 1.37564 * 123.92583 * 270.55046 * 3 2 1 5 5 O 1.21237 * 128.46211 * 3.10940 * 4 3 2 6 6 C 1.51152 * 104.34496 * 183.24823 * 4 3 2 7 7 H 1.09006 * 111.62572 * 111.91130 * 6 4 3 8 8 C 1.53206 * 111.05701 * 237.07800 * 6 4 3 9 9 N 1.47096 * 108.57551 * 165.11009 * 8 6 4 10 10 C 1.46894 * 111.00025 * 169.90378 * 9 8 6 11 11 C 1.53001 * 109.47132 * 75.91554 * 10 9 8 12 12 H 1.09000 * 109.47312 * 55.26208 * 11 10 9 13 13 O 1.42894 * 109.47052 * 295.25985 * 11 10 9 14 14 C 1.50701 * 109.47105 * 175.26012 * 11 10 9 15 15 H 1.08007 * 119.99895 * 359.97438 * 14 11 10 16 16 C 1.37873 * 120.00440 * 180.02562 * 14 11 10 17 17 N 1.31515 * 120.00611 * 180.02562 * 16 14 11 18 18 Si 1.86808 * 119.99552 * 359.97438 * 16 14 11 19 19 H 1.48504 * 109.47028 * 90.00387 * 18 16 14 20 20 H 1.48497 * 109.46895 * 209.99998 * 18 16 14 21 21 H 1.48499 * 109.47369 * 330.00374 * 18 16 14 22 22 C 1.46738 * 112.48397 * 294.95599 * 9 8 6 23 23 C 1.53769 * 109.78426 * 63.74568 * 22 9 8 24 24 N 1.46573 * 106.94819 * 309.95682 * 23 22 9 25 25 C 1.33342 * 130.29253 * 230.70394 * 24 23 22 26 26 O 1.21535 * 124.05685 * 348.61021 * 25 24 23 27 27 H 1.09007 * 109.46697 * 59.99667 * 1 2 3 28 28 H 1.08992 * 109.47228 * 179.97438 * 1 2 3 29 29 H 1.09003 * 109.46774 * 300.00220 * 1 2 3 30 30 H 1.09003 * 109.46774 * 239.99780 * 2 1 3 31 31 H 1.09001 * 109.47148 * 120.00840 * 2 1 3 32 32 H 1.09005 * 109.61673 * 284.83246 * 8 6 4 33 33 H 1.08997 * 109.61948 * 45.19542 * 8 6 4 34 34 H 1.09011 * 109.47106 * 195.91531 * 10 9 8 35 35 H 1.08994 * 109.47415 * 315.91362 * 10 9 8 36 36 H 0.96704 * 114.00249 * 299.99376 * 13 11 10 37 37 H 0.96996 * 120.00180 * 180.02562 * 17 16 14 38 38 H 1.08998 * 109.42030 * 183.84547 * 22 9 8 39 39 H 1.08997 * 109.41461 * 303.65101 * 22 9 8 40 40 H 1.09002 * 109.96102 * 69.31405 * 23 22 9 41 41 H 1.09001 * 109.96233 * 190.50783 * 23 22 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.2641 2.1086 -1.1414 5 8 2.0832 1.7847 -2.2956 6 6 2.8210 3.4201 -0.6370 7 1 3.8730 3.5367 -0.8978 8 6 1.9834 4.6020 -1.1356 9 7 2.3357 5.7921 -0.3461 10 6 1.7461 7.0044 -0.9297 11 6 0.2518 7.0521 -0.6049 12 1 0.1120 6.9812 0.4738 13 8 -0.4097 5.9585 -1.2439 14 6 -0.3293 8.3505 -1.1024 15 1 0.3041 9.0700 -1.6001 16 6 -1.6691 8.6206 -0.9213 17 7 -2.1763 9.7535 -1.3559 18 14 -2.7644 7.3764 -0.0599 19 1 -2.7673 7.6468 1.4004 20 1 -4.1485 7.4871 -0.5865 21 1 -2.2482 6.0064 -0.3085 22 6 1.9676 5.6567 1.0679 23 6 2.7692 4.5106 1.7068 24 7 2.6244 3.3462 0.8284 25 6 2.2704 2.0920 1.1104 26 8 2.1862 1.6456 2.2377 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.8933 -0.5139 -0.8900 31 1 1.8934 -0.5140 0.8899 32 1 2.1984 4.7845 -2.1886 33 1 0.9240 4.3778 -1.0119 34 1 2.2369 7.8841 -0.5128 35 1 1.8827 6.9906 -2.0110 36 1 -0.3271 5.9575 -2.2074 37 1 -3.1189 9.9435 -1.2282 38 1 2.1871 6.5877 1.5903 39 1 0.9020 5.4410 1.1458 40 1 3.8201 4.7896 1.7844 41 1 2.3708 4.2840 2.6958 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001333117550.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:00:47 Heat of formation + Delta-G solvation = -92.597577 kcal Electronic energy + Delta-G solvation = -25763.188254 eV Core-core repulsion = 22064.709088 eV Total energy + Delta-G solvation = -3698.479166 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -43.42017 -40.00560 -39.75588 -37.78823 -36.91911 -35.58851 -34.44433 -33.18826 -31.71818 -30.60597 -28.65888 -26.35047 -25.76099 -24.08961 -24.01023 -22.63001 -21.61862 -20.63719 -19.38984 -18.54420 -18.15672 -17.53459 -16.97860 -16.85318 -16.71517 -16.47142 -16.26425 -15.72334 -15.64302 -15.36738 -15.01086 -14.99812 -14.91696 -14.45462 -14.30047 -13.77762 -13.45107 -13.24425 -13.05049 -12.98317 -12.78889 -12.42762 -12.30413 -12.27931 -12.21626 -12.02071 -11.78832 -11.20100 -11.18283 -10.90179 -10.87256 -10.57020 -10.06094 -8.97373 -8.37202 -6.50082 0.48661 1.00627 1.32700 1.40456 1.66947 1.85299 1.90389 2.37670 2.72374 3.01014 3.21068 3.43536 3.76076 3.90220 3.94556 4.09633 4.12196 4.13052 4.22916 4.26732 4.37643 4.43535 4.51547 4.60473 4.68153 4.71073 4.89150 4.90516 4.98886 5.05868 5.14097 5.18894 5.36031 5.42717 5.45475 5.93003 6.04127 6.06256 6.12659 6.24022 6.64243 6.99576 7.12927 7.31629 8.76852 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.019072 B = 0.004979 C = 0.004709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1467.730844 B = 5622.693233 C = 5944.767977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.111 3.889 3 N -0.590 5.590 4 C 0.538 3.462 5 O -0.476 6.476 6 C 0.097 3.903 7 H 0.163 0.837 8 C 0.057 3.943 9 N -0.524 5.524 10 C 0.054 3.946 11 C 0.168 3.832 12 H 0.053 0.947 13 O -0.583 6.583 14 C -0.558 4.558 15 H 0.044 0.956 16 C 0.032 3.968 17 N -0.938 5.938 18 Si 0.931 3.069 19 H -0.288 1.288 20 H -0.302 1.302 21 H -0.210 1.210 22 C 0.033 3.967 23 C 0.161 3.839 24 N -0.616 5.616 25 C 0.705 3.295 26 O -0.581 6.581 27 H 0.048 0.952 28 H 0.101 0.899 29 H 0.043 0.957 30 H 0.108 0.892 31 H 0.101 0.899 32 H 0.103 0.897 33 H 0.052 0.948 34 H 0.082 0.918 35 H 0.079 0.921 36 H 0.367 0.633 37 H 0.265 0.735 38 H 0.105 0.895 39 H 0.024 0.976 40 H 0.109 0.891 41 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.866 -17.175 3.063 21.099 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.009 4.009 3 N -0.338 5.338 4 C 0.326 3.674 5 O -0.346 6.346 6 C -0.010 4.010 7 H 0.180 0.820 8 C -0.072 4.072 9 N -0.247 5.247 10 C -0.074 4.074 11 C 0.109 3.891 12 H 0.070 0.930 13 O -0.391 6.391 14 C -0.597 4.597 15 H 0.062 0.938 16 C -0.168 4.168 17 N -0.578 5.578 18 Si 0.757 3.243 19 H -0.215 1.215 20 H -0.230 1.230 21 H -0.132 1.132 22 C -0.096 4.096 23 C 0.041 3.959 24 N -0.353 5.353 25 C 0.408 3.592 26 O -0.458 6.458 27 H 0.067 0.933 28 H 0.120 0.880 29 H 0.063 0.937 30 H 0.126 0.874 31 H 0.120 0.880 32 H 0.121 0.879 33 H 0.070 0.930 34 H 0.100 0.900 35 H 0.097 0.903 36 H 0.215 0.785 37 H 0.074 0.926 38 H 0.123 0.877 39 H 0.042 0.958 40 H 0.127 0.873 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 11.959 -17.593 3.729 21.597 hybrid contribution -1.857 0.359 -0.244 1.907 sum 10.101 -17.234 3.485 20.278 Atomic orbital electron populations 1.22105 0.94570 1.04222 1.01375 1.21824 0.95430 0.78163 1.05490 1.47377 1.62518 1.16545 1.07322 1.21428 0.75138 0.86574 0.84250 1.90789 1.50251 1.76193 1.17346 1.22582 1.04321 0.93196 0.80929 0.82002 1.22374 0.97605 0.88297 0.98946 1.61857 1.58794 1.02233 1.01822 1.22597 0.92861 0.91707 1.00197 1.20325 0.90913 0.84107 0.93710 0.92969 1.86616 1.78217 1.50148 1.24104 1.21848 0.94772 1.03916 1.39120 0.93800 1.25761 0.99969 0.96209 0.94828 1.70074 1.14285 1.25765 1.47677 0.86106 0.76849 0.83812 0.77526 1.21520 1.22970 1.13224 1.22667 0.97347 0.99913 0.89685 1.21851 1.02457 0.79696 0.91886 1.47728 1.70153 1.08662 1.08748 1.15628 0.77802 0.81869 0.83910 1.90929 1.59746 1.73951 1.21203 0.93294 0.88024 0.93750 0.87384 0.88042 0.87857 0.93010 0.89968 0.90288 0.78457 0.92620 0.87681 0.95802 0.87258 0.88362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.10 10.24 71.98 0.74 -2.37 16 2 C 0.11 2.07 6.49 86.38 0.56 2.63 16 3 N -0.59 -13.94 2.68 -769.97 -2.07 -16.01 16 4 C 0.54 12.81 7.77 87.35 0.68 13.49 16 5 O -0.48 -13.11 17.93 -2.90 -0.05 -13.16 16 6 C 0.10 2.05 4.01 44.16 0.18 2.23 16 7 H 0.16 2.57 8.14 -2.38 -0.02 2.55 16 8 C 0.06 1.41 4.45 86.33 0.38 1.79 16 9 N -0.52 -13.51 4.71 -894.14 -4.21 -17.72 16 10 C 0.05 1.72 5.17 86.30 0.45 2.16 16 11 C 0.17 6.80 1.82 29.85 0.05 6.85 16 12 H 0.05 2.21 5.64 -2.39 -0.01 2.20 16 13 O -0.58 -22.86 7.38 -148.98 -1.10 -23.96 16 14 C -0.56 -29.04 9.34 25.60 0.24 -28.80 16 15 H 0.04 2.50 7.99 -2.91 -0.02 2.48 16 16 C 0.03 1.79 5.47 84.65 0.46 2.26 16 17 N -0.94 -56.76 13.96 21.45 0.30 -56.46 16 18 Si 0.93 44.23 26.99 68.60 1.85 46.08 16 19 H -0.29 -13.62 7.11 99.48 0.71 -12.92 16 20 H -0.30 -14.64 7.11 99.48 0.71 -13.93 16 21 H -0.21 -9.53 5.31 99.48 0.53 -9.00 16 22 C 0.03 0.82 4.62 86.59 0.40 1.22 16 23 C 0.16 3.29 7.20 86.62 0.62 3.91 16 24 N -0.62 -14.38 3.05 -816.12 -2.49 -16.87 16 25 C 0.71 18.95 8.36 179.67 1.50 20.45 16 26 O -0.58 -18.80 17.35 -3.83 -0.07 -18.87 16 27 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 28 H 0.10 1.34 8.14 -2.39 -0.02 1.32 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.11 1.64 8.11 -2.39 -0.02 1.62 16 31 H 0.10 1.76 7.84 -2.39 -0.02 1.75 16 32 H 0.10 2.36 7.88 -2.38 -0.02 2.34 16 33 H 0.05 1.59 5.97 -2.39 -0.01 1.57 16 34 H 0.08 2.65 8.14 -2.38 -0.02 2.63 16 35 H 0.08 2.44 7.82 -2.39 -0.02 2.42 16 36 H 0.37 12.89 9.04 -74.05 -0.67 12.22 16 37 H 0.26 15.21 8.31 -92.71 -0.77 14.44 16 38 H 0.11 2.40 8.09 -2.39 -0.02 2.38 16 39 H 0.02 0.74 6.66 -2.39 -0.02 0.73 16 40 H 0.11 1.70 8.14 -2.39 -0.02 1.68 16 41 H 0.10 1.99 8.08 -2.39 -0.02 1.97 16 Total: -1.00 -69.31 328.76 -1.36 -70.67 By element: Atomic # 1 Polarization: 20.26 SS G_CDS: 0.20 Total: 20.46 kcal Atomic # 6 Polarization: 19.57 SS G_CDS: 6.26 Total: 25.84 kcal Atomic # 7 Polarization: -98.59 SS G_CDS: -8.46 Total: -107.06 kcal Atomic # 8 Polarization: -54.78 SS G_CDS: -1.22 Total: -56.00 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 1.85 Total: 46.08 kcal Total: -69.31 -1.36 -70.67 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001333117550.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.929 kcal (2) G-P(sol) polarization free energy of solvation -69.307 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.236 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.361 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.668 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds