Wall clock time and date at job start Tue Mar 31 2020 05:05:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48499 * 109.47011 * 239.99937 * 3 2 1 5 5 H 1.48491 * 109.47294 * 0.02562 * 3 2 1 6 6 H 1.48507 * 109.46525 * 120.00234 * 3 2 1 7 7 C 1.37878 * 119.99530 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99509 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00511 * 359.97438 * 7 2 1 10 10 H 1.08996 * 109.47202 * 300.00680 * 9 7 2 11 11 O 1.42905 * 109.46640 * 60.00642 * 9 7 2 12 12 C 1.53000 * 109.47198 * 180.02562 * 9 7 2 13 13 N 1.46906 * 109.47072 * 180.02562 * 12 9 7 14 14 C 1.46961 * 110.99734 * 293.80266 * 13 12 9 15 15 C 1.53049 * 109.36292 * 176.81247 * 14 13 12 16 16 N 1.46955 * 109.36716 * 58.39846 * 15 14 13 17 17 C 1.46896 * 111.00246 * 176.81294 * 16 15 14 18 18 C 1.50700 * 109.47191 * 293.79978 * 17 16 15 19 19 O 1.21283 * 119.99698 * 359.97438 * 18 17 16 20 20 N 1.34778 * 120.00222 * 179.97438 * 18 17 16 21 21 C 1.46496 * 119.99761 * 180.02562 * 20 18 17 22 22 C 1.53010 * 117.49394 * 223.74546 * 21 20 18 23 23 C 1.52999 * 117.49602 * 155.09002 * 21 20 18 24 24 C 1.46961 * 110.88206 * 300.68030 * 16 15 14 25 25 C 1.46952 * 110.99889 * 170.00107 * 13 12 9 26 26 H 0.97001 * 119.99851 * 0.02562 * 1 2 3 27 27 H 0.96699 * 114.00063 * 60.00410 * 11 9 7 28 28 H 1.08993 * 109.47007 * 60.00472 * 12 9 7 29 29 H 1.08996 * 109.47340 * 300.00278 * 12 9 7 30 30 H 1.09003 * 109.48904 * 296.77641 * 14 13 12 31 31 H 1.09002 * 109.49205 * 56.84173 * 14 13 12 32 32 H 1.09008 * 109.48964 * 298.43140 * 15 14 13 33 33 H 1.09002 * 109.49130 * 178.36713 * 15 14 13 34 34 H 1.09004 * 109.47192 * 53.79854 * 17 16 15 35 35 H 1.08996 * 109.47259 * 173.79971 * 17 16 15 36 36 H 0.97002 * 119.99894 * 0.02562 * 20 18 17 37 37 H 1.08994 * 115.55586 * 9.41644 * 21 20 18 38 38 H 1.08993 * 117.50197 * 0.02562 * 22 21 20 39 39 H 1.09008 * 117.49309 * 145.02214 * 22 21 20 40 40 H 1.09003 * 117.49531 * 214.97260 * 23 21 20 41 41 H 1.08999 * 117.50541 * 359.97191 * 23 21 20 42 42 H 1.09003 * 109.48904 * 299.35325 * 24 16 15 43 43 H 1.08989 * 109.49349 * 179.28524 * 24 16 15 44 44 H 1.08999 * 109.49234 * 303.15264 * 25 13 12 45 45 H 1.08996 * 109.49284 * 63.22180 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2842 2.7464 0.0006 6 1 3.1029 1.6962 1.2126 7 6 2.0044 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 1 0.6246 -2.5571 0.8896 11 8 0.4291 -2.5746 -1.1672 12 6 2.2452 -3.6621 -0.0005 13 7 1.5106 -4.9343 -0.0012 14 6 0.7674 -5.1139 1.2539 15 6 -0.0451 -6.4089 1.1816 16 7 0.8616 -7.5405 0.9434 17 6 0.1271 -8.8126 0.9427 18 6 -0.4180 -9.0786 2.3223 19 8 -0.2143 -8.2866 3.2179 20 7 -1.1320 -10.1966 2.5608 21 6 -1.6624 -10.4548 3.9017 22 6 -1.5239 -11.8747 4.4548 23 6 -2.8943 -11.3552 4.0128 24 6 1.6049 -7.3609 -0.3116 25 6 2.4175 -6.0659 -0.2394 26 1 -0.4850 0.8401 -0.0004 27 1 0.9210 -2.5291 -1.9984 28 1 2.8717 -3.6044 0.8894 29 1 2.8719 -3.6044 -0.8904 30 1 1.4683 -5.1704 2.0867 31 1 0.0938 -4.2697 1.4016 32 1 -0.7649 -6.3416 0.3657 33 1 -0.5746 -6.5590 2.1225 34 1 -0.6967 -8.7562 0.2312 35 1 0.8002 -9.6206 0.6561 36 1 -1.2946 -10.8302 1.8445 37 1 -1.5773 -9.6290 4.6081 38 1 -1.0379 -12.6165 3.8212 39 1 -1.3481 -11.9829 5.5252 40 1 -3.6195 -11.1220 4.7925 41 1 -3.3105 -11.7552 3.0882 42 1 0.9040 -7.3044 -1.1445 43 1 2.2784 -8.2050 -0.4594 44 1 2.9469 -5.9158 -1.1803 45 1 3.1371 -6.1332 0.5765 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001347140551.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:05:16 Heat of formation + Delta-G solvation = -37.316797 kcal Electronic energy + Delta-G solvation = -24354.977076 eV Core-core repulsion = 20794.728159 eV Total energy + Delta-G solvation = -3560.248917 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.19978 -38.75095 -37.31885 -35.97419 -34.14947 -33.09802 -32.01373 -30.61178 -29.57838 -27.53146 -25.20040 -23.43408 -23.24891 -22.79805 -22.00782 -20.78161 -20.29671 -19.36387 -17.35444 -17.01915 -16.80424 -15.71895 -15.64474 -14.81333 -14.71629 -14.67165 -14.56663 -14.50366 -14.20774 -13.77121 -13.41975 -13.29391 -13.05034 -12.87781 -12.40744 -12.16645 -11.99093 -11.72003 -11.58368 -11.09428 -10.98563 -10.93204 -10.89057 -10.83453 -10.79091 -10.48543 -10.36732 -9.97499 -9.76025 -9.04355 -8.91329 -8.50459 -8.28689 -8.02200 -7.54934 -5.94780 -4.12912 2.42968 2.70613 3.32563 3.37630 3.39429 3.53988 3.96321 4.37824 4.38601 4.51741 4.55910 4.58781 4.60657 4.97798 5.07303 5.20048 5.21092 5.32491 5.38266 5.41677 5.53021 5.57012 5.65571 5.66236 5.76532 5.88642 6.02319 6.15844 6.17436 6.25711 6.35016 6.41150 6.51876 6.66214 6.87326 6.94174 7.11571 7.26987 7.63350 7.71804 7.84569 7.95618 8.07849 8.26922 8.90914 9.52206 9.68772 11.09347 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.029460 B = 0.002692 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 950.204764 B =10398.154690 C =10900.034602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.859 5.859 2 C 0.080 3.920 3 Si 0.889 3.111 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.574 4.574 8 H 0.054 0.946 9 C 0.237 3.763 10 H 0.054 0.946 11 O -0.554 6.554 12 C 0.032 3.968 13 N -0.529 5.529 14 C 0.062 3.938 15 C 0.056 3.944 16 N -0.524 5.524 17 C 0.038 3.962 18 C 0.517 3.483 19 O -0.512 6.512 20 N -0.709 5.709 21 C 0.083 3.917 22 C -0.195 4.195 23 C -0.191 4.191 24 C 0.061 3.939 25 C 0.056 3.944 26 H 0.260 0.740 27 H 0.341 0.659 28 H 0.027 0.973 29 H 0.062 0.938 30 H 0.035 0.965 31 H 0.088 0.912 32 H 0.038 0.962 33 H 0.091 0.909 34 H 0.064 0.936 35 H 0.102 0.898 36 H 0.400 0.600 37 H 0.138 0.862 38 H 0.096 0.904 39 H 0.101 0.899 40 H 0.103 0.897 41 H 0.097 0.903 42 H 0.043 0.957 43 H 0.073 0.927 44 H 0.075 0.925 45 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.362 -24.649 2.693 24.908 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.495 5.495 2 C -0.127 4.127 3 Si 0.716 3.284 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.612 4.612 8 H 0.072 0.928 9 C 0.179 3.821 10 H 0.072 0.928 11 O -0.356 6.356 12 C -0.096 4.096 13 N -0.254 5.254 14 C -0.066 4.066 15 C -0.071 4.071 16 N -0.249 5.249 17 C -0.093 4.093 18 C 0.303 3.697 19 O -0.385 6.385 20 N -0.361 5.361 21 C -0.023 4.023 22 C -0.234 4.234 23 C -0.229 4.229 24 C -0.066 4.066 25 C -0.073 4.073 26 H 0.070 0.930 27 H 0.184 0.816 28 H 0.045 0.955 29 H 0.080 0.920 30 H 0.053 0.947 31 H 0.106 0.894 32 H 0.056 0.944 33 H 0.109 0.891 34 H 0.082 0.918 35 H 0.120 0.880 36 H 0.234 0.766 37 H 0.156 0.844 38 H 0.114 0.886 39 H 0.120 0.880 40 H 0.121 0.879 41 H 0.115 0.885 42 H 0.061 0.939 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -2.841 -23.952 3.801 24.418 hybrid contribution 0.935 0.509 -0.697 1.273 sum -1.906 -23.443 3.104 23.724 Atomic orbital electron populations 1.70075 1.05894 1.26434 1.47053 1.25023 0.94685 0.99031 0.93915 0.86738 0.79710 0.83268 0.78638 1.20178 1.21228 1.20223 1.21628 0.93095 0.91671 1.54829 0.92823 1.19313 0.87829 0.88520 0.86444 0.92804 1.86557 1.37737 1.96320 1.14961 1.23055 0.97242 0.89786 0.99482 1.62218 1.27004 1.01872 1.34313 1.22095 0.97405 0.96708 0.90417 1.22356 0.93917 0.89348 1.01501 1.61894 1.27555 1.00720 1.34729 1.21909 0.98645 0.95277 0.93516 1.20685 0.77417 0.80586 0.90980 1.90709 1.56329 1.45334 1.46115 1.45406 1.55496 1.24223 1.11004 1.21575 0.99172 0.94855 0.86695 1.23435 0.99961 0.97787 1.02205 1.23388 0.91735 1.04089 1.03716 1.22175 0.96876 0.97837 0.89760 1.22106 0.94220 0.90347 1.00596 0.92991 0.81560 0.95516 0.91959 0.94709 0.89356 0.94363 0.89112 0.91810 0.88020 0.76618 0.84433 0.88565 0.88028 0.87869 0.88500 0.93854 0.90867 0.90702 0.94766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.86 -25.87 12.84 55.43 0.71 -25.15 16 2 C 0.08 2.27 5.40 -17.82 -0.10 2.17 16 3 Si 0.89 21.52 29.54 -169.99 -5.02 16.50 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 5 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 6 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 7 C -0.57 -16.06 8.76 -34.44 -0.30 -16.36 16 8 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 9 C 0.24 6.16 2.70 -27.88 -0.08 6.08 16 10 H 0.05 1.54 6.49 -51.93 -0.34 1.21 16 11 O -0.55 -14.74 12.60 -35.23 -0.44 -15.18 16 12 C 0.03 0.68 4.56 -3.82 -0.02 0.67 16 13 N -0.53 -10.12 4.58 -234.46 -1.07 -11.20 16 14 C 0.06 1.19 5.41 -3.77 -0.02 1.16 16 15 C 0.06 0.92 5.26 -3.77 -0.02 0.90 16 16 N -0.52 -7.38 4.44 -235.91 -1.05 -8.43 16 17 C 0.04 0.39 5.45 -4.98 -0.03 0.36 16 18 C 0.52 6.04 7.53 -10.98 -0.08 5.95 16 19 O -0.51 -8.28 13.91 5.56 0.08 -8.20 16 20 N -0.71 -5.81 5.57 -53.81 -0.30 -6.11 16 21 C 0.08 0.68 6.43 -67.93 -0.44 0.25 16 22 C -0.20 -1.20 10.46 -26.69 -0.28 -1.48 16 23 C -0.19 -1.12 10.46 -26.69 -0.28 -1.40 16 24 C 0.06 0.80 5.61 -3.76 -0.02 0.78 16 25 C 0.06 0.87 5.61 -3.77 -0.02 0.85 16 26 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 27 H 0.34 8.17 9.04 45.56 0.41 8.58 16 28 H 0.03 0.58 8.12 -51.93 -0.42 0.16 16 29 H 0.06 1.29 8.03 -51.93 -0.42 0.87 16 30 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.09 1.88 6.34 -51.93 -0.33 1.55 16 32 H 0.04 0.64 8.14 -51.92 -0.42 0.22 16 33 H 0.09 1.56 5.85 -51.93 -0.30 1.25 16 34 H 0.06 0.57 8.12 -51.93 -0.42 0.15 16 35 H 0.10 0.77 8.03 -51.93 -0.42 0.36 16 36 H 0.40 2.03 8.83 -40.82 -0.36 1.67 16 37 H 0.14 1.40 7.40 -51.93 -0.38 1.01 16 38 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.10 0.57 8.14 -51.92 -0.42 0.15 16 40 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.10 0.48 8.14 -51.93 -0.42 0.05 16 42 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 43 H 0.07 0.76 8.07 -51.94 -0.42 0.34 16 44 H 0.07 1.07 8.07 -51.93 -0.42 0.65 16 45 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 361.99 15.07 5.46 5.46 Total: -1.00 -34.02 361.99 -10.06 -44.08 By element: Atomic # 1 Polarization: 15.03 SS G_CDS: -6.74 Total: 8.29 kcal Atomic # 6 Polarization: 1.62 SS G_CDS: -1.68 Total: -0.05 kcal Atomic # 7 Polarization: -49.18 SS G_CDS: -1.71 Total: -50.89 kcal Atomic # 8 Polarization: -23.02 SS G_CDS: -0.37 Total: -23.39 kcal Atomic # 14 Polarization: 21.52 SS G_CDS: -5.02 Total: 16.50 kcal Total LS contribution 5.46 Total: 5.46 kcal Total: -34.02 -10.06 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001347140551.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.764 kcal (2) G-P(sol) polarization free energy of solvation -34.020 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.256 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.061 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.081 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.317 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds