Wall clock time and date at job start Tue Mar 31 2020 04:21:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46490 * 1 3 3 C 1.46497 * 120.00322 * 2 1 4 4 C 1.53006 * 109.46992 * 269.99874 * 3 2 1 5 5 N 1.46505 * 109.46992 * 179.97438 * 4 3 2 6 6 C 1.36933 * 119.99754 * 179.97438 * 5 4 3 7 7 H 1.08004 * 120.00478 * 0.02562 * 6 5 4 8 8 C 1.38809 * 119.99910 * 179.97438 * 6 5 4 9 9 N 1.31622 * 120.00388 * 179.97438 * 8 6 5 10 10 Si 1.86798 * 120.00069 * 0.02562 * 8 6 5 11 11 H 1.48505 * 109.47550 * 89.99737 * 10 8 6 12 12 H 1.48503 * 109.47369 * 209.99811 * 10 8 6 13 13 H 1.48503 * 109.47152 * 329.99569 * 10 8 6 14 14 C 1.34780 * 120.00111 * 179.97438 * 2 1 3 15 15 O 1.21280 * 120.00423 * 179.97438 * 14 2 1 16 16 C 1.50701 * 119.99795 * 0.02562 * 14 2 1 17 17 C 1.52997 * 109.47212 * 179.97438 * 16 14 2 18 18 N 1.46500 * 109.47473 * 179.97438 * 17 16 14 19 19 C 1.33875 * 122.76488 * 269.71158 * 18 17 16 20 20 O 1.21230 * 125.39200 * 359.97438 * 19 18 17 21 21 C 1.51315 * 109.20750 * 179.83865 * 19 18 17 22 22 C 1.54230 * 103.55426 * 0.38916 * 21 19 18 23 23 C 1.33875 * 122.75903 * 89.99982 * 18 17 16 24 24 O 1.21226 * 125.40090 * 359.97438 * 23 18 17 25 25 H 1.08995 * 109.47620 * 270.00337 * 1 2 3 26 26 H 1.09006 * 109.47028 * 30.00444 * 1 2 3 27 27 H 1.09002 * 109.47109 * 150.00022 * 1 2 3 28 28 H 1.09000 * 109.47018 * 29.99405 * 3 2 1 29 29 H 1.09000 * 109.47828 * 149.99700 * 3 2 1 30 30 H 1.09000 * 109.46856 * 299.99630 * 4 3 2 31 31 H 1.09002 * 109.47088 * 59.99836 * 4 3 2 32 32 H 0.97002 * 119.99939 * 359.97438 * 5 4 3 33 33 H 0.96993 * 120.00363 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.47060 * 299.99722 * 16 14 2 35 35 H 1.09001 * 109.47380 * 59.99809 * 16 14 2 36 36 H 1.09002 * 109.47153 * 299.99998 * 17 16 14 37 37 H 1.08998 * 109.47533 * 59.99628 * 17 16 14 38 38 H 1.08998 * 110.79380 * 241.77795 * 21 19 18 39 39 H 1.09002 * 110.54273 * 118.87508 * 21 19 18 40 40 H 1.08995 * 110.60329 * 241.25892 * 22 21 19 41 41 H 1.08997 * 110.60287 * 118.29489 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4649 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7103 -1.4426 5 7 3.1846 2.9793 -1.4426 6 6 3.5273 3.5720 -2.6285 7 1 3.2576 3.1042 -3.5638 8 6 4.2204 4.7746 -2.6285 9 7 4.5504 5.3441 -3.7684 10 14 4.6863 5.5842 -1.0108 11 1 6.0228 5.0996 -0.5815 12 1 4.7278 7.0580 -1.1887 13 1 3.6786 5.2387 0.0239 14 6 2.1388 -1.1672 0.0005 15 8 3.3516 -1.1673 0.0001 16 6 1.3853 -2.4723 0.0005 17 6 2.3795 -3.6352 0.0005 18 7 1.6470 -4.9040 0.0011 19 6 1.2901 -5.5340 1.1272 20 8 1.5213 -5.1461 2.2522 21 6 0.5495 -6.8051 0.7731 22 6 0.5490 -6.8055 -0.7692 23 6 1.2845 -5.5317 -1.1244 24 8 1.5092 -5.1412 -2.2498 25 1 -0.3634 0.0001 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5138 28 1 1.6084 2.0283 0.5137 29 1 3.1499 1.1384 0.5139 30 1 3.0416 0.9506 -1.9563 31 1 1.5001 1.8406 -1.9564 32 1 3.4265 3.3997 -0.6025 33 1 5.0350 6.1843 -3.7684 34 1 0.7583 -2.5299 0.8903 35 1 0.7589 -2.5303 -0.8897 36 1 3.0062 -3.5775 -0.8895 37 1 3.0062 -3.5776 0.8904 38 1 -0.4703 -6.7785 1.1571 39 1 1.0801 -7.6765 1.1568 40 1 -0.4710 -6.7792 -1.1524 41 1 1.0817 -7.6757 -1.1526 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001493621104.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:21:17 Heat of formation + Delta-G solvation = -108.312525 kcal Electronic energy + Delta-G solvation = -23706.932958 eV Core-core repulsion = 20007.772340 eV Total energy + Delta-G solvation = -3699.160618 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -42.89903 -41.06519 -39.66155 -37.65226 -36.99714 -36.22264 -35.18832 -33.71318 -31.89477 -30.10887 -27.63803 -27.08659 -26.34361 -24.67950 -23.29034 -23.17452 -20.59931 -20.38474 -19.66757 -18.72504 -17.97867 -17.61643 -17.58587 -17.28931 -16.84344 -16.43836 -15.85157 -15.77162 -15.30157 -15.27598 -14.96776 -14.93147 -14.77728 -14.62931 -14.36139 -13.87052 -13.70075 -13.46630 -13.44075 -13.22828 -12.99209 -12.85753 -12.43305 -12.39666 -12.13434 -12.06473 -11.86396 -11.69266 -11.14904 -11.08646 -11.06101 -10.87234 -9.79901 -9.41359 -8.08761 -5.45210 0.49359 1.34319 1.37320 1.40453 1.46212 1.47167 1.67531 1.97847 2.44284 3.21944 3.22464 3.28444 3.41009 3.61696 3.66373 3.71991 3.78614 4.04471 4.11423 4.20192 4.22776 4.28697 4.37017 4.46910 4.47887 4.68688 4.73848 4.82226 4.89592 4.93455 4.94646 4.98246 5.00049 5.39911 5.66846 5.81705 6.13946 6.26642 6.32729 6.72009 6.98354 7.02418 7.72049 7.93945 9.12583 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.029750 B = 0.002708 C = 0.002626 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 940.944482 B =10335.588183 C =10660.957403 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.069 3.931 2 N -0.610 5.610 3 C 0.116 3.884 4 C 0.149 3.851 5 N -0.754 5.754 6 C -0.244 4.244 7 H 0.051 0.949 8 C -0.063 4.063 9 N -0.982 5.982 10 Si 0.961 3.039 11 H -0.281 1.281 12 H -0.289 1.289 13 H -0.244 1.244 14 C 0.509 3.491 15 O -0.583 6.583 16 C -0.136 4.136 17 C 0.113 3.887 18 N -0.579 5.579 19 C 0.519 3.481 20 O -0.522 6.522 21 C -0.139 4.139 22 C -0.139 4.139 23 C 0.516 3.484 24 O -0.525 6.525 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.106 0.894 29 H 0.067 0.933 30 H 0.001 0.999 31 H 0.034 0.966 32 H 0.369 0.631 33 H 0.261 0.739 34 H 0.122 0.878 35 H 0.115 0.885 36 H 0.079 0.921 37 H 0.087 0.913 38 H 0.152 0.848 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.288 -29.392 13.999 36.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.342 5.342 3 C -0.008 4.008 4 C 0.022 3.978 5 N -0.401 5.401 6 C -0.375 4.375 7 H 0.069 0.931 8 C -0.254 4.254 9 N -0.632 5.632 10 Si 0.787 3.213 11 H -0.207 1.207 12 H -0.215 1.215 13 H -0.168 1.168 14 C 0.298 3.702 15 O -0.463 6.463 16 C -0.176 4.176 17 C -0.010 4.010 18 N -0.321 5.321 19 C 0.312 3.688 20 O -0.396 6.396 21 C -0.178 4.178 22 C -0.178 4.178 23 C 0.308 3.692 24 O -0.399 6.399 25 H 0.101 0.899 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.124 0.876 29 H 0.086 0.914 30 H 0.019 0.981 31 H 0.052 0.948 32 H 0.203 0.797 33 H 0.070 0.930 34 H 0.140 0.860 35 H 0.133 0.867 36 H 0.098 0.902 37 H 0.105 0.895 38 H 0.169 0.831 39 H 0.163 0.837 40 H 0.168 0.832 41 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -16.437 -28.955 13.776 36.033 hybrid contribution 1.063 1.353 0.134 1.726 sum -15.374 -27.603 13.910 34.522 Atomic orbital electron populations 1.22175 0.76304 1.04914 1.03870 1.47871 1.08917 1.04865 1.72561 1.21454 0.98010 0.85486 0.95819 1.20954 0.94413 0.86137 0.96309 1.42499 1.69159 1.24234 1.04223 1.18975 1.29498 1.02976 0.86049 0.93102 1.25602 1.00633 0.98381 1.00816 1.69892 1.46072 1.20343 1.26887 0.85326 0.78860 0.77345 0.79759 1.20729 1.21526 1.16837 1.20990 0.87620 0.86394 0.75246 1.90730 1.16102 1.88006 1.51451 1.21851 0.99251 0.89882 1.06607 1.21261 0.93943 0.81223 1.04567 1.47048 1.51889 1.22528 1.10680 1.21847 0.77252 0.87092 0.82658 1.90792 1.54909 1.71180 1.22768 1.22611 1.04845 0.94676 0.95630 1.22619 1.04792 0.94481 0.95945 1.21918 0.77248 0.87267 0.82721 1.90815 1.54947 1.71175 1.22980 0.89870 0.90040 0.89045 0.87589 0.91404 0.98083 0.94813 0.79741 0.93048 0.85980 0.86742 0.90211 0.89465 0.83066 0.83697 0.83217 0.83773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.06 10.24 127.77 1.31 2.37 16 2 N -0.61 -15.90 2.87 -846.77 -2.43 -18.34 16 3 C 0.12 3.72 5.52 86.38 0.48 4.20 16 4 C 0.15 6.27 6.58 86.38 0.57 6.84 16 5 N -0.75 -37.83 5.41 -343.43 -1.86 -39.69 16 6 C -0.24 -14.84 10.47 84.03 0.88 -13.96 16 7 H 0.05 3.40 8.06 -2.91 -0.02 3.38 16 8 C -0.06 -3.85 5.50 84.86 0.47 -3.38 16 9 N -0.98 -65.03 13.97 21.65 0.30 -64.72 16 10 Si 0.96 46.73 27.74 68.60 1.90 48.63 16 11 H -0.28 -13.55 7.11 99.48 0.71 -12.84 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 H -0.24 -10.46 6.52 99.48 0.65 -9.81 16 14 C 0.51 14.80 7.67 87.66 0.67 15.47 16 15 O -0.58 -22.77 15.56 -3.03 -0.05 -22.82 16 16 C -0.14 -2.69 4.58 29.85 0.14 -2.55 16 17 C 0.11 2.53 4.84 86.38 0.42 2.95 16 18 N -0.58 -9.23 2.55 -756.66 -1.93 -11.16 16 19 C 0.52 6.76 8.08 87.99 0.71 7.47 16 20 O -0.52 -11.23 17.47 -2.87 -0.05 -11.28 16 21 C -0.14 -0.06 7.03 30.46 0.21 0.16 16 22 C -0.14 -0.15 7.03 30.46 0.21 0.07 16 23 C 0.52 7.35 8.08 87.99 0.71 8.06 16 24 O -0.53 -12.62 17.48 -2.86 -0.05 -12.67 16 25 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 26 H 0.08 1.26 8.07 -2.38 -0.02 1.24 16 27 H 0.09 1.02 6.44 -2.39 -0.02 1.00 16 28 H 0.11 2.82 8.07 -2.39 -0.02 2.80 16 29 H 0.07 2.44 7.42 -2.39 -0.02 2.42 16 30 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 31 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.37 17.20 5.53 -92.71 -0.51 16.69 16 33 H 0.26 16.28 8.31 -92.71 -0.77 15.51 16 34 H 0.12 1.83 8.11 -2.39 -0.02 1.81 16 35 H 0.11 1.95 7.40 -2.39 -0.02 1.93 16 36 H 0.08 2.16 7.79 -2.39 -0.02 2.15 16 37 H 0.09 2.20 7.78 -2.39 -0.02 2.19 16 38 H 0.15 -0.68 8.14 -2.39 -0.02 -0.70 16 39 H 0.15 -0.49 8.14 -2.39 -0.02 -0.51 16 40 H 0.15 -0.54 8.14 -2.39 -0.02 -0.56 16 41 H 0.14 -0.37 8.14 -2.39 -0.02 -0.39 16 Total: -1.00 -92.10 349.38 3.09 -89.01 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.47 Total: 15.35 kcal Atomic # 6 Polarization: 20.92 SS G_CDS: 6.78 Total: 27.69 kcal Atomic # 7 Polarization: -127.99 SS G_CDS: -5.92 Total: -133.91 kcal Atomic # 8 Polarization: -46.63 SS G_CDS: -0.15 Total: -46.78 kcal Atomic # 14 Polarization: 46.73 SS G_CDS: 1.90 Total: 48.63 kcal Total: -92.10 3.09 -89.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001493621104.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.305 kcal (2) G-P(sol) polarization free energy of solvation -92.095 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.087 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -89.008 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds