Wall clock time and date at job start Tue Mar 31 2020 04:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47380 * 2 1 4 4 C 1.46497 * 120.00104 * 262.84368 * 3 2 1 5 5 C 1.50708 * 109.46518 * 269.99417 * 4 3 2 6 6 H 1.07990 * 120.00258 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99524 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99941 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47118 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46817 * 119.99953 * 9 7 5 12 12 H 1.48493 * 109.47241 * 240.00355 * 9 7 5 13 13 C 1.34775 * 119.99932 * 82.83592 * 3 2 1 14 14 O 1.21661 * 120.00089 * 183.42065 * 13 3 2 15 15 C 1.46738 * 119.99943 * 3.41891 * 13 3 2 16 16 N 1.29692 * 119.54938 * 353.27397 * 15 13 3 17 17 N 1.39851 * 121.13931 * 180.38595 * 16 15 13 18 18 C 1.46502 * 119.79795 * 199.19307 * 17 16 15 19 19 C 1.53002 * 109.47160 * 269.97782 * 18 17 16 20 20 O 1.42899 * 109.47237 * 64.99731 * 19 18 17 21 21 C 1.34749 * 120.40962 * 19.17013 * 17 16 15 22 22 O 1.21250 * 120.12575 * 179.75264 * 21 17 16 23 23 C 1.50772 * 119.75272 * 359.72641 * 21 17 16 24 24 C 1.50550 * 119.54629 * 173.54239 * 15 13 3 25 25 H 1.09001 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47291 * 300.00047 * 1 2 3 27 27 H 1.08997 * 109.47036 * 60.00259 * 1 2 3 28 28 H 1.09000 * 109.47291 * 239.99953 * 2 1 3 29 29 H 1.09000 * 109.47495 * 119.99949 * 2 1 3 30 30 H 1.08998 * 109.47462 * 29.99014 * 4 3 2 31 31 H 1.09000 * 109.47410 * 149.99647 * 4 3 2 32 32 H 0.96999 * 119.99811 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46995 * 29.97366 * 18 17 16 34 34 H 1.08997 * 109.47737 * 149.97453 * 18 17 16 35 35 H 1.08999 * 109.47371 * 184.99915 * 19 18 17 36 36 H 1.09001 * 109.46953 * 304.99956 * 19 18 17 37 37 H 0.96698 * 114.00358 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.51665 * 206.82206 * 23 21 17 39 39 H 1.09003 * 109.51196 * 86.66361 * 23 21 17 40 40 H 1.08996 * 109.45017 * 265.59183 * 24 15 13 41 41 H 1.09004 * 109.44648 * 25.51231 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4116 2.0191 -1.2588 5 6 3.8756 1.7679 -1.5132 6 1 4.4552 1.1912 -0.8077 7 6 4.4751 2.2744 -2.6469 8 7 3.7694 2.9771 -3.5059 9 14 6.2899 1.9637 -2.9620 10 1 6.8531 1.1525 -1.8530 11 1 6.4513 1.2298 -4.2429 12 1 7.0078 3.2612 -3.0410 13 6 2.1058 2.0650 1.1581 14 8 2.4519 3.2314 1.1512 15 6 1.7834 1.4029 2.4273 16 7 1.2908 0.2032 2.4157 17 7 0.9641 -0.4559 3.6051 18 6 0.8169 -1.9135 3.6130 19 6 -0.6369 -2.2809 3.3087 20 8 -0.9622 -1.8752 1.9777 21 6 0.7845 0.2413 4.7441 22 8 0.4970 -0.3350 5.7715 23 6 0.9428 1.7406 4.7365 24 6 2.0235 2.1277 3.7248 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8239 1.6021 -2.0766 31 1 2.2331 3.0924 -1.1936 32 1 4.1910 3.3331 -4.3036 33 1 1.4679 -2.3485 2.8546 34 1 1.0920 -2.3013 4.5938 35 1 -0.7663 -3.3591 3.4017 36 1 -1.2951 -1.7737 4.0142 37 1 -1.8710 -2.0768 1.7160 38 1 1.2355 2.0810 5.7298 39 1 -0.0024 2.2051 4.4554 40 1 3.0029 1.8545 4.1173 41 1 1.9896 3.2033 3.5512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001630823876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:02 Heat of formation + Delta-G solvation = -55.915406 kcal Electronic energy + Delta-G solvation = -25431.295866 eV Core-core repulsion = 21734.407358 eV Total energy + Delta-G solvation = -3696.888508 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.82799 -39.19185 -37.18778 -36.79608 -35.40293 -34.09203 -32.83960 -31.45723 -29.91041 -29.56503 -27.15683 -25.55784 -24.14203 -23.09705 -22.79778 -21.87873 -19.61855 -17.88453 -17.61600 -17.44192 -16.82272 -16.41462 -16.11101 -15.60893 -15.30174 -14.83104 -14.58093 -14.37111 -13.93428 -13.81864 -13.51420 -13.21488 -12.97648 -12.69887 -12.43735 -12.33735 -12.23117 -11.86088 -11.71011 -11.42334 -11.23233 -11.12785 -10.97975 -10.78346 -10.60445 -10.26544 -10.19571 -10.06512 -9.70213 -9.49989 -9.00554 -8.68596 -8.44205 -7.66654 -6.05199 -4.10094 1.14487 2.17822 2.40329 3.30025 3.37418 3.40948 3.58462 3.74531 3.94515 4.17718 4.43506 4.49430 4.68656 4.88111 4.90242 4.93988 5.00165 5.15506 5.26973 5.30975 5.44930 5.54818 5.61145 5.67829 5.77792 6.00703 6.04427 6.13303 6.21418 6.50049 6.65185 6.88766 7.06923 7.41636 7.47314 7.50997 7.59504 7.89643 7.94039 8.20731 8.34469 8.81209 8.98744 9.54875 11.02891 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.004517 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.600398 B = 6197.715684 C = 6792.433080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.100 3.900 3 N -0.567 5.567 4 C 0.243 3.757 5 C -0.527 4.527 6 H 0.059 0.941 7 C 0.062 3.938 8 N -0.893 5.893 9 Si 0.898 3.102 10 H -0.273 1.273 11 H -0.284 1.284 12 H -0.283 1.283 13 C 0.558 3.442 14 O -0.532 6.532 15 C 0.079 3.921 16 N -0.182 5.182 17 N -0.459 5.459 18 C 0.135 3.865 19 C 0.062 3.938 20 O -0.551 6.551 21 C 0.495 3.505 22 O -0.533 6.533 23 C -0.141 4.141 24 C -0.107 4.107 25 H 0.068 0.932 26 H 0.050 0.950 27 H 0.041 0.959 28 H 0.073 0.927 29 H 0.098 0.902 30 H 0.037 0.963 31 H 0.047 0.953 32 H 0.263 0.737 33 H 0.096 0.904 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.045 0.955 37 H 0.373 0.627 38 H 0.114 0.886 39 H 0.105 0.895 40 H 0.097 0.903 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.189 -9.526 13.634 19.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.024 4.024 3 N -0.297 5.297 4 C 0.124 3.876 5 C -0.565 4.565 6 H 0.077 0.923 7 C -0.140 4.140 8 N -0.532 5.532 9 Si 0.726 3.274 10 H -0.198 1.198 11 H -0.210 1.210 12 H -0.209 1.209 13 C 0.341 3.659 14 O -0.408 6.408 15 C -0.114 4.114 16 N 0.007 4.993 17 N -0.278 5.278 18 C 0.013 3.987 19 C -0.017 4.017 20 O -0.355 6.355 21 C 0.283 3.717 22 O -0.407 6.407 23 C -0.181 4.181 24 C -0.147 4.147 25 H 0.087 0.913 26 H 0.069 0.931 27 H 0.060 0.940 28 H 0.092 0.908 29 H 0.115 0.885 30 H 0.055 0.945 31 H 0.065 0.935 32 H 0.073 0.927 33 H 0.115 0.885 34 H 0.121 0.879 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.220 0.780 38 H 0.133 0.867 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges -8.819 -9.704 13.547 18.854 hybrid contribution 0.529 0.098 0.302 0.617 sum -8.290 -9.606 13.849 18.783 Atomic orbital electron populations 1.21967 0.95820 1.01884 1.00420 1.21947 0.94431 0.82873 1.03138 1.48320 1.59587 1.13703 1.08086 1.19423 0.95339 0.94672 0.78186 1.21449 0.94592 1.33980 1.06516 0.92308 1.24924 0.98340 0.94880 0.95863 1.69943 1.36144 1.35346 1.11807 0.86437 0.84924 0.78037 0.77990 1.19808 1.20964 1.20862 1.17217 0.80189 0.86291 0.82244 1.90817 1.48548 1.15595 1.85815 1.25385 0.95563 0.92659 0.97820 1.75779 1.09156 1.08647 1.05757 1.49248 1.65615 1.07576 1.05358 1.21564 0.96563 0.76949 1.03575 1.22492 0.96077 0.98090 0.85053 1.86718 1.34320 1.84903 1.29564 1.21349 0.76175 0.91146 0.82996 1.90694 1.47074 1.71799 1.31175 1.21832 1.01945 0.91538 1.02764 1.20873 0.99403 1.04078 0.90309 0.91336 0.93074 0.94033 0.90818 0.88507 0.94515 0.93515 0.92735 0.88532 0.87919 0.92560 0.93705 0.78050 0.86743 0.87686 0.88502 0.86562 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 8.74 37.16 0.32 -1.84 16 2 C 0.10 1.74 5.70 -4.04 -0.02 1.72 16 3 N -0.57 -12.07 2.47 -176.59 -0.44 -12.50 16 4 C 0.24 6.25 5.15 -5.19 -0.03 6.23 16 5 C -0.53 -14.69 9.39 -34.44 -0.32 -15.01 16 6 H 0.06 1.64 7.81 -52.49 -0.41 1.23 16 7 C 0.06 1.75 5.46 -17.82 -0.10 1.65 16 8 N -0.89 -26.16 13.29 55.43 0.74 -25.43 16 9 Si 0.90 21.58 29.54 -169.99 -5.02 16.56 16 10 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 11 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 12 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 13 C 0.56 11.46 7.56 -12.83 -0.10 11.37 16 14 O -0.53 -12.69 15.76 5.22 0.08 -12.60 16 15 C 0.08 1.26 6.58 -80.14 -0.53 0.73 16 16 N -0.18 -2.65 5.37 34.90 0.19 -2.46 16 17 N -0.46 -5.93 3.41 -60.28 -0.21 -6.14 16 18 C 0.14 1.41 6.08 -4.04 -0.02 1.38 16 19 C 0.06 0.55 7.39 37.16 0.27 0.82 16 20 O -0.55 -5.25 11.00 -35.23 -0.39 -5.64 16 21 C 0.49 6.53 7.55 -10.96 -0.08 6.45 16 22 O -0.53 -8.08 16.67 5.58 0.09 -7.98 16 23 C -0.14 -1.53 6.20 -27.84 -0.17 -1.70 16 24 C -0.11 -1.34 5.89 -27.95 -0.16 -1.50 16 25 H 0.07 0.90 6.46 -51.93 -0.34 0.57 16 26 H 0.05 0.80 6.77 -51.93 -0.35 0.45 16 27 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 1.33 8.02 -51.93 -0.42 0.91 16 29 H 0.10 1.61 5.25 -54.14 -0.28 1.32 16 30 H 0.04 0.96 8.07 -51.93 -0.42 0.54 16 31 H 0.05 1.34 7.38 -51.93 -0.38 0.96 16 32 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 33 H 0.10 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.10 0.99 7.41 -51.93 -0.39 0.60 16 35 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 36 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 37 H 0.37 2.14 9.12 45.56 0.42 2.55 16 38 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 39 H 0.10 1.05 8.14 -51.93 -0.42 0.63 16 40 H 0.10 1.13 8.14 -51.93 -0.42 0.70 16 41 H 0.12 1.47 7.47 -51.93 -0.39 1.08 16 LS Contribution 339.59 15.07 5.12 5.12 Total: -1.00 -33.88 339.59 -5.83 -39.71 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -5.05 Total: 1.08 kcal Atomic # 6 Polarization: 11.23 SS G_CDS: -0.94 Total: 10.29 kcal Atomic # 7 Polarization: -46.81 SS G_CDS: 0.28 Total: -46.53 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.21 Total: -26.23 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -33.88 -5.83 -39.71 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630823876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.208 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.090 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.825 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds