Wall clock time and date at job start Tue Mar 31 2020 04:04:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 N 1.46500 * 109.47380 * 2 1 4 4 C 1.46497 * 120.00104 * 262.84368 * 3 2 1 5 5 C 1.50708 * 109.46518 * 269.99417 * 4 3 2 6 6 H 1.07990 * 120.00258 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99524 * 179.97438 * 5 4 3 8 8 N 1.31518 * 120.00069 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99941 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47118 * 0.02562 * 9 7 5 11 11 H 1.48504 * 109.46817 * 119.99953 * 9 7 5 12 12 H 1.48493 * 109.47241 * 240.00355 * 9 7 5 13 13 C 1.34775 * 119.99932 * 82.83592 * 3 2 1 14 14 O 1.21661 * 120.00089 * 183.42065 * 13 3 2 15 15 C 1.46738 * 119.99943 * 3.41891 * 13 3 2 16 16 N 1.29692 * 119.54938 * 353.27397 * 15 13 3 17 17 N 1.39851 * 121.13931 * 180.38595 * 16 15 13 18 18 C 1.46502 * 119.79795 * 199.19307 * 17 16 15 19 19 C 1.53002 * 109.47160 * 269.97782 * 18 17 16 20 20 O 1.42899 * 109.47237 * 64.99731 * 19 18 17 21 21 C 1.34749 * 120.40962 * 19.17013 * 17 16 15 22 22 O 1.21250 * 120.12575 * 179.75264 * 21 17 16 23 23 C 1.50772 * 119.75272 * 359.72641 * 21 17 16 24 24 C 1.50550 * 119.54629 * 173.54239 * 15 13 3 25 25 H 1.09001 * 109.46893 * 180.02562 * 1 2 3 26 26 H 1.09000 * 109.47291 * 300.00047 * 1 2 3 27 27 H 1.08997 * 109.47036 * 60.00259 * 1 2 3 28 28 H 1.09000 * 109.47291 * 239.99953 * 2 1 3 29 29 H 1.09000 * 109.47495 * 119.99949 * 2 1 3 30 30 H 1.08998 * 109.47462 * 29.99014 * 4 3 2 31 31 H 1.09000 * 109.47410 * 149.99647 * 4 3 2 32 32 H 0.96999 * 119.99811 * 180.02562 * 8 7 5 33 33 H 1.09001 * 109.46995 * 29.97366 * 18 17 16 34 34 H 1.08997 * 109.47737 * 149.97453 * 18 17 16 35 35 H 1.08999 * 109.47371 * 184.99915 * 19 18 17 36 36 H 1.09001 * 109.46953 * 304.99956 * 19 18 17 37 37 H 0.96698 * 114.00358 * 180.02562 * 20 19 18 38 38 H 1.09002 * 109.51665 * 206.82206 * 23 21 17 39 39 H 1.09003 * 109.51196 * 86.66361 * 23 21 17 40 40 H 1.08996 * 109.45017 * 265.59183 * 24 15 13 41 41 H 1.09004 * 109.44648 * 25.51231 * 24 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.4116 2.0191 -1.2588 5 6 3.8756 1.7679 -1.5132 6 1 4.4552 1.1912 -0.8077 7 6 4.4751 2.2744 -2.6469 8 7 3.7694 2.9771 -3.5059 9 14 6.2899 1.9637 -2.9620 10 1 6.8531 1.1525 -1.8530 11 1 6.4513 1.2298 -4.2429 12 1 7.0078 3.2612 -3.0410 13 6 2.1058 2.0650 1.1581 14 8 2.4519 3.2314 1.1512 15 6 1.7834 1.4029 2.4273 16 7 1.2908 0.2032 2.4157 17 7 0.9641 -0.4559 3.6051 18 6 0.8169 -1.9135 3.6130 19 6 -0.6369 -2.2809 3.3087 20 8 -0.9622 -1.8752 1.9777 21 6 0.7845 0.2413 4.7441 22 8 0.4970 -0.3350 5.7715 23 6 0.9428 1.7406 4.7365 24 6 2.0235 2.1277 3.7248 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.8239 1.6021 -2.0766 31 1 2.2331 3.0924 -1.1936 32 1 4.1910 3.3331 -4.3036 33 1 1.4679 -2.3485 2.8546 34 1 1.0920 -2.3013 4.5938 35 1 -0.7663 -3.3591 3.4017 36 1 -1.2951 -1.7737 4.0142 37 1 -1.8710 -2.0768 1.7160 38 1 1.2355 2.0810 5.7298 39 1 -0.0024 2.2051 4.4554 40 1 3.0029 1.8545 4.1173 41 1 1.9896 3.2033 3.5512 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001630823876.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:04:02 Heat of formation + Delta-G solvation = -80.842724 kcal Electronic energy + Delta-G solvation = -25432.376795 eV Core-core repulsion = 21734.407358 eV Total energy + Delta-G solvation = -3697.969438 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.96596 -40.69329 -38.23870 -37.72561 -37.06903 -35.11546 -34.82939 -32.65319 -31.45930 -30.53792 -29.00960 -26.63844 -25.66621 -24.50204 -24.04446 -23.13424 -21.01126 -19.01402 -18.86093 -18.51325 -18.32258 -17.87769 -17.18826 -17.08991 -16.69190 -16.23031 -16.11003 -15.73736 -14.95301 -14.89708 -14.84923 -14.49941 -14.36299 -13.99854 -13.67337 -13.63921 -13.25014 -13.20357 -13.16852 -12.97742 -12.81552 -12.61702 -12.43091 -12.20814 -12.11634 -11.93630 -11.67359 -11.41654 -11.10935 -10.81266 -10.61946 -10.37329 -9.79178 -9.42545 -8.20056 -6.34638 -0.13271 1.11510 1.32973 1.40116 1.41923 1.53826 2.08373 2.24558 2.42627 2.86619 3.10242 3.46251 3.49306 3.51334 3.92087 4.01385 4.12980 4.18180 4.21573 4.37585 4.51174 4.62133 4.64916 4.71147 4.74346 4.81853 4.83643 4.96789 5.10363 5.12441 5.17870 5.25950 5.38076 5.59639 5.62212 5.84437 6.06560 6.48947 6.64535 6.74434 6.83401 7.00036 7.20312 7.38365 8.87482 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.020335 B = 0.004517 C = 0.004121 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.600398 B = 6197.715684 C = 6792.433080 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C 0.101 3.899 3 N -0.576 5.576 4 C 0.259 3.741 5 C -0.542 4.542 6 H 0.054 0.946 7 C 0.011 3.989 8 N -0.926 5.926 9 Si 0.968 3.032 10 H -0.268 1.268 11 H -0.271 1.271 12 H -0.280 1.280 13 C 0.554 3.446 14 O -0.574 6.574 15 C 0.069 3.931 16 N -0.172 5.172 17 N -0.455 5.455 18 C 0.123 3.877 19 C 0.068 3.932 20 O -0.570 6.570 21 C 0.493 3.507 22 O -0.550 6.550 23 C -0.133 4.133 24 C -0.100 4.100 25 H 0.094 0.906 26 H 0.047 0.953 27 H 0.027 0.973 28 H 0.065 0.935 29 H 0.111 0.889 30 H 0.026 0.974 31 H 0.008 0.992 32 H 0.268 0.732 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.085 0.915 36 H 0.035 0.965 37 H 0.390 0.610 38 H 0.140 0.860 39 H 0.116 0.884 40 H 0.108 0.892 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.107 -11.235 15.006 20.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.185 4.185 2 C -0.022 4.022 3 N -0.306 5.306 4 C 0.138 3.862 5 C -0.581 4.581 6 H 0.072 0.928 7 C -0.188 4.188 8 N -0.566 5.566 9 Si 0.792 3.208 10 H -0.192 1.192 11 H -0.196 1.196 12 H -0.206 1.206 13 C 0.339 3.661 14 O -0.452 6.452 15 C -0.124 4.124 16 N 0.016 4.984 17 N -0.275 5.275 18 C 0.003 3.997 19 C -0.010 4.010 20 O -0.378 6.378 21 C 0.282 3.718 22 O -0.426 6.426 23 C -0.172 4.172 24 C -0.140 4.140 25 H 0.112 0.888 26 H 0.066 0.934 27 H 0.047 0.953 28 H 0.083 0.917 29 H 0.129 0.871 30 H 0.044 0.956 31 H 0.026 0.974 32 H 0.076 0.924 33 H 0.119 0.881 34 H 0.130 0.870 35 H 0.103 0.897 36 H 0.053 0.947 37 H 0.239 0.761 38 H 0.158 0.842 39 H 0.134 0.866 40 H 0.126 0.874 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -8.772 -11.458 14.933 20.766 hybrid contribution 0.414 0.551 -0.101 0.696 sum -8.357 -10.907 14.832 20.219 Atomic orbital electron populations 1.21832 0.93848 1.03219 0.99557 1.22143 0.95896 0.80750 1.03390 1.48312 1.60075 1.15077 1.07120 1.18889 0.94593 0.92644 0.80095 1.21690 0.95583 1.34133 1.06696 0.92775 1.25813 1.03056 0.94415 0.95529 1.70055 1.38175 1.36058 1.12322 0.85367 0.79078 0.78025 0.78328 1.19177 1.19620 1.20599 1.17765 0.79039 0.85910 0.83360 1.90780 1.50204 1.17489 1.86748 1.24819 0.97297 0.93551 0.96695 1.75560 1.07514 1.08105 1.07253 1.49409 1.65002 1.08478 1.04639 1.21896 0.98056 0.75395 1.04371 1.22436 0.94498 0.99599 0.84504 1.86636 1.35976 1.85306 1.29848 1.21709 0.75514 0.91992 0.82556 1.90693 1.47915 1.72380 1.31624 1.21879 1.01905 0.89980 1.03466 1.20889 1.00638 1.03537 0.88925 0.88786 0.93385 0.95337 0.91660 0.87142 0.95631 0.97431 0.92354 0.88078 0.87007 0.89727 0.94688 0.76095 0.84236 0.86595 0.87398 0.86772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.71 8.74 71.98 0.63 -3.08 16 2 C 0.10 3.48 5.70 86.38 0.49 3.97 16 3 N -0.58 -25.16 2.47 -830.84 -2.06 -27.22 16 4 C 0.26 13.93 5.15 85.64 0.44 14.37 16 5 C -0.54 -31.00 9.39 25.60 0.24 -30.76 16 6 H 0.05 3.07 7.81 -2.92 -0.02 3.05 16 7 C 0.01 0.63 5.46 84.65 0.46 1.09 16 8 N -0.93 -55.35 13.29 21.45 0.28 -55.07 16 9 Si 0.97 44.40 29.54 68.60 2.03 46.43 16 10 H -0.27 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 13 C 0.55 23.25 7.56 86.46 0.65 23.90 16 14 O -0.57 -28.39 15.76 -4.22 -0.07 -28.46 16 15 C 0.07 2.14 6.58 45.05 0.30 2.44 16 16 N -0.17 -4.74 5.37 -43.49 -0.23 -4.98 16 17 N -0.46 -10.78 3.41 -463.04 -1.58 -12.36 16 18 C 0.12 2.26 6.08 86.38 0.53 2.79 16 19 C 0.07 1.02 7.39 71.98 0.53 1.55 16 20 O -0.57 -9.33 11.00 -148.98 -1.64 -10.96 16 21 C 0.49 11.82 7.55 87.68 0.66 12.48 16 22 O -0.55 -15.36 16.67 -2.94 -0.05 -15.41 16 23 C -0.13 -2.55 6.20 29.87 0.19 -2.36 16 24 C -0.10 -2.37 5.89 29.80 0.18 -2.19 16 25 H 0.09 2.28 6.46 -2.39 -0.02 2.26 16 26 H 0.05 1.44 6.77 -2.39 -0.02 1.42 16 27 H 0.03 0.89 8.14 -2.39 -0.02 0.88 16 28 H 0.06 2.35 8.02 -2.39 -0.02 2.34 16 29 H 0.11 3.54 5.25 -5.28 -0.03 3.51 16 30 H 0.03 1.41 8.07 -2.39 -0.02 1.39 16 31 H 0.01 0.46 7.38 -2.39 -0.02 0.45 16 32 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 34 H 0.11 1.87 7.41 -2.39 -0.02 1.85 16 35 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 36 H 0.03 0.60 8.14 -2.39 -0.02 0.58 16 37 H 0.39 3.39 9.12 -74.06 -0.68 2.71 16 38 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 39 H 0.12 2.03 8.14 -2.39 -0.02 2.01 16 40 H 0.11 2.31 8.14 -2.39 -0.02 2.29 16 41 H 0.11 2.79 7.47 -2.39 -0.02 2.77 16 Total: -1.00 -74.28 339.59 2.35 -71.93 By element: Atomic # 1 Polarization: 11.53 SS G_CDS: 0.37 Total: 11.89 kcal Atomic # 6 Polarization: 18.91 SS G_CDS: 5.30 Total: 24.20 kcal Atomic # 7 Polarization: -96.04 SS G_CDS: -3.58 Total: -99.62 kcal Atomic # 8 Polarization: -53.08 SS G_CDS: -1.75 Total: -54.83 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -74.28 2.35 -71.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001630823876.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.911 kcal (2) G-P(sol) polarization free energy of solvation -74.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.350 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.932 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds