Wall clock time and date at job start Tue Mar 31 2020 04:20:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00500 * 2 1 4 4 C 1.52997 * 109.47499 * 270.00352 * 3 2 1 5 5 C 1.53004 * 109.47253 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47057 * 179.97438 * 5 4 3 7 7 C 1.36933 * 119.99668 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00148 * 0.02562 * 7 6 5 9 9 C 1.38816 * 119.99720 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00143 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99731 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46983 * 120.00044 * 11 9 7 14 14 H 1.48497 * 109.47202 * 239.99619 * 11 9 7 15 15 C 1.34782 * 119.99639 * 180.02562 * 2 1 3 16 16 O 1.21281 * 119.99870 * 180.02562 * 15 2 1 17 17 C 1.50695 * 119.99779 * 359.97438 * 15 2 1 18 18 C 1.53001 * 109.46788 * 180.02562 * 17 15 2 19 19 H 1.08996 * 110.66703 * 56.48124 * 18 17 15 20 20 C 1.54236 * 110.60660 * 179.40768 * 18 17 15 21 21 C 1.51315 * 103.55147 * 118.51776 * 20 18 17 22 22 O 1.21235 * 125.39508 * 180.02562 * 21 20 18 23 23 N 1.33875 * 109.21241 * 0.02562 * 21 20 18 24 24 C 1.33884 * 114.46988 * 359.97438 * 23 21 20 25 25 O 1.21228 * 125.39038 * 179.97438 * 24 23 21 26 26 H 1.09004 * 109.47272 * 269.99885 * 1 2 3 27 27 H 1.09011 * 109.46832 * 29.99366 * 1 2 3 28 28 H 1.09000 * 109.47520 * 149.99359 * 1 2 3 29 29 H 1.09000 * 109.46780 * 30.00290 * 3 2 1 30 30 H 1.09007 * 109.47276 * 149.99978 * 3 2 1 31 31 H 1.09000 * 109.47053 * 299.99770 * 4 3 2 32 32 H 1.09004 * 109.47130 * 60.00089 * 4 3 2 33 33 H 1.08995 * 109.47360 * 300.00548 * 5 4 3 34 34 H 1.09004 * 109.46628 * 60.00212 * 5 4 3 35 35 H 0.96997 * 119.99943 * 0.02562 * 6 5 4 36 36 H 0.96992 * 119.99955 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.47331 * 60.00636 * 17 15 2 38 38 H 1.09000 * 109.47303 * 300.00201 * 17 15 2 39 39 H 1.08995 * 110.60911 * 237.03231 * 20 18 17 40 40 H 1.09001 * 110.60231 * 0.02562 * 20 18 17 41 41 H 0.96993 * 122.76850 * 180.26726 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7104 -1.4424 5 6 3.2171 3.0357 -1.4424 6 7 3.4618 3.4584 -2.8236 7 6 4.1352 4.6242 -3.0737 8 1 4.4862 5.2319 -2.2528 9 6 4.3666 5.0250 -4.3824 10 7 3.9392 4.2842 -5.3829 11 14 5.2845 6.6157 -4.7236 12 1 5.6560 7.2585 -3.4375 13 1 6.5141 6.3204 -5.5022 14 1 4.4137 7.5324 -5.5024 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1673 -0.0001 17 6 1.3852 -2.4723 -0.0005 18 6 2.3794 -3.6352 -0.0005 19 1 3.0574 -3.5617 0.8497 20 6 1.6348 -4.9859 0.0144 21 6 2.0685 -5.6441 -1.2772 22 8 1.7104 -6.7360 -1.6636 23 7 2.9103 -4.8298 -1.9256 24 6 3.1558 -3.6726 -1.2987 25 8 3.8851 -2.7942 -1.7063 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5139 31 1 3.0416 0.9508 -1.9563 32 1 1.5001 1.8409 -1.9563 33 1 2.6279 3.7951 -0.9285 34 1 4.1696 2.9056 -0.9284 35 1 3.1469 2.9124 -3.5608 36 1 4.1012 4.5640 -6.2973 37 1 0.7582 -2.5298 -0.8903 38 1 0.7588 -2.5302 0.8897 39 1 1.9425 -5.5841 0.8720 40 1 0.5562 -4.8292 0.0214 41 1 3.3063 -5.0575 -2.7813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001670369083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:47 Heat of formation + Delta-G solvation = -89.265969 kcal Electronic energy + Delta-G solvation = -23835.575274 eV Core-core repulsion = 20137.240577 eV Total energy + Delta-G solvation = -3698.334697 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 5.16 seconds Orbital eigenvalues (eV) -42.15460 -39.90001 -38.73049 -36.26038 -36.06889 -34.77986 -33.94442 -32.21692 -30.11417 -28.86464 -26.94710 -25.87628 -24.64546 -22.78068 -22.08569 -21.18810 -20.76739 -19.17683 -18.18279 -17.30560 -17.00936 -16.96536 -16.51607 -15.95898 -15.82357 -15.01732 -14.58537 -14.48945 -14.46248 -14.24506 -13.93685 -13.40231 -13.25191 -13.16674 -13.06973 -12.83883 -12.57056 -12.44628 -11.93869 -11.81638 -11.63853 -10.99719 -10.88210 -10.82535 -10.68420 -10.55545 -10.34418 -10.21294 -10.00123 -9.73515 -9.64871 -8.81781 -8.63251 -6.85555 -5.70523 -2.98978 1.22026 2.42477 2.46881 2.61660 2.90532 3.47287 3.52405 3.55121 3.65425 3.80856 3.91623 4.20414 4.46856 4.64474 4.67237 4.83648 4.90863 5.00460 5.11139 5.16207 5.29689 5.36309 5.45710 5.51910 5.62230 5.69212 5.74877 5.96897 6.14032 6.33792 6.35964 6.45201 6.56189 6.92833 6.95713 7.01068 7.33403 7.61496 7.75725 8.17580 8.48440 9.59184 10.18457 10.53001 11.52733 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.002856 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.909990 B = 9801.323978 C =10613.858825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.618 5.618 3 C 0.121 3.879 4 C -0.139 4.139 5 C 0.157 3.843 6 N -0.734 5.734 7 C -0.237 4.237 8 H 0.071 0.929 9 C -0.017 4.017 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.292 1.292 14 H -0.292 1.292 15 C 0.500 3.500 16 O -0.504 6.504 17 C -0.127 4.127 18 C -0.110 4.110 19 H 0.132 0.868 20 C -0.155 4.155 21 C 0.530 3.470 22 O -0.491 6.491 23 N -0.685 5.685 24 C 0.518 3.482 25 O -0.431 6.431 26 H 0.056 0.944 27 H 0.075 0.925 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.067 0.933 32 H 0.059 0.941 33 H 0.017 0.983 34 H 0.020 0.980 35 H 0.383 0.617 36 H 0.254 0.746 37 H 0.098 0.902 38 H 0.111 0.889 39 H 0.124 0.876 40 H 0.123 0.877 41 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.384 -19.943 15.794 27.871 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.352 5.352 3 C -0.001 4.001 4 C -0.178 4.178 5 C 0.029 3.971 6 N -0.378 5.378 7 C -0.368 4.368 8 H 0.089 0.911 9 C -0.213 4.213 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.219 1.219 14 H -0.219 1.219 15 C 0.286 3.714 16 O -0.378 6.378 17 C -0.167 4.167 18 C -0.132 4.132 19 H 0.150 0.850 20 C -0.194 4.194 21 C 0.318 3.682 22 O -0.364 6.364 23 N -0.352 5.352 24 C 0.303 3.697 25 O -0.296 6.296 26 H 0.075 0.925 27 H 0.094 0.906 28 H 0.086 0.914 29 H 0.094 0.906 30 H 0.103 0.897 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.035 0.965 34 H 0.038 0.962 35 H 0.217 0.783 36 H 0.064 0.936 37 H 0.116 0.884 38 H 0.130 0.870 39 H 0.142 0.858 40 H 0.141 0.859 41 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -10.474 -19.804 15.569 27.281 hybrid contribution 0.429 0.620 -1.077 1.314 sum -10.045 -19.184 14.492 26.057 Atomic orbital electron populations 1.21813 0.79808 1.03489 1.01611 1.47865 1.06815 1.06385 1.74141 1.21467 0.97420 0.83319 0.97940 1.22053 1.00961 0.99012 0.95784 1.20536 0.96038 0.91878 0.88675 1.42367 1.68295 1.25953 1.01150 1.19297 1.27618 0.98064 0.91817 0.91104 1.24760 1.01828 0.99094 0.95578 1.69678 1.51682 1.38866 0.98100 0.86098 0.79184 0.83088 0.77737 1.20544 1.21875 1.21908 1.20391 0.88360 0.85124 0.77523 1.90843 1.13133 1.86806 1.46990 1.21647 0.98116 0.91435 1.05491 1.21841 0.98096 0.94488 0.98732 0.84984 1.22598 1.03913 0.95650 0.97288 1.20744 0.76955 0.84000 0.86482 1.90822 1.55421 1.18891 1.71219 1.44893 1.45099 1.20144 1.25039 1.20695 0.81732 0.80685 0.86600 1.90979 1.32813 1.37382 1.68455 0.92537 0.90595 0.91358 0.90624 0.89747 0.91438 0.92203 0.96482 0.96228 0.78338 0.93620 0.88373 0.87037 0.85784 0.85905 0.74539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 10.24 59.84 0.61 1.13 16 2 N -0.62 -6.83 2.87 -181.57 -0.52 -7.35 16 3 C 0.12 1.64 5.41 -4.04 -0.02 1.62 16 4 C -0.14 -2.44 5.65 -26.73 -0.15 -2.59 16 5 C 0.16 3.36 6.26 -4.04 -0.03 3.33 16 6 N -0.73 -19.89 5.60 -59.91 -0.34 -20.23 16 7 C -0.24 -6.97 9.99 -15.06 -0.15 -7.12 16 8 H 0.07 2.01 7.83 -52.49 -0.41 1.60 16 9 C -0.02 -0.51 5.50 -17.43 -0.10 -0.60 16 10 N -0.93 -29.44 13.06 55.49 0.72 -28.71 16 11 Si 0.91 23.16 29.55 -169.99 -5.02 18.14 16 12 H -0.28 -6.90 7.11 56.52 0.40 -6.49 16 13 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 14 H -0.29 -7.41 7.11 56.52 0.40 -7.01 16 15 C 0.50 5.90 7.35 -10.99 -0.08 5.82 16 16 O -0.50 -8.31 13.15 -17.45 -0.23 -8.54 16 17 C -0.13 -0.79 3.59 -27.89 -0.10 -0.89 16 18 C -0.11 -0.72 2.72 -90.83 -0.25 -0.96 16 19 H 0.13 0.83 8.03 -51.93 -0.42 0.42 16 20 C -0.15 -0.58 6.67 -26.93 -0.18 -0.76 16 21 C 0.53 4.02 8.55 -11.09 -0.09 3.93 16 22 O -0.49 -5.39 18.02 5.60 0.10 -5.29 16 23 N -0.68 -5.66 5.48 -11.39 -0.06 -5.72 16 24 C 0.52 5.45 7.71 -11.09 -0.09 5.36 16 25 O -0.43 -6.94 15.43 -17.40 -0.27 -7.21 16 26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.55 8.07 -51.92 -0.42 0.13 16 28 H 0.07 0.32 6.44 -51.93 -0.33 -0.01 16 29 H 0.08 0.86 8.07 -51.93 -0.42 0.44 16 30 H 0.08 1.27 7.42 -51.93 -0.39 0.88 16 31 H 0.07 1.37 8.14 -51.93 -0.42 0.95 16 32 H 0.06 1.02 8.14 -51.93 -0.42 0.60 16 33 H 0.02 0.35 8.14 -51.93 -0.42 -0.07 16 34 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 35 H 0.38 10.94 7.67 -40.82 -0.31 10.63 16 36 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 37 H 0.10 0.51 7.40 -51.93 -0.38 0.12 16 38 H 0.11 0.30 8.11 -51.93 -0.42 -0.12 16 39 H 0.12 0.22 8.14 -51.93 -0.42 -0.20 16 40 H 0.12 0.19 7.74 -51.93 -0.40 -0.21 16 41 H 0.42 3.13 8.96 -40.82 -0.37 2.76 16 LS Contribution 347.03 15.07 5.23 5.23 Total: -1.00 -39.92 347.03 -6.95 -46.87 By element: Atomic # 1 Polarization: 10.50 SS G_CDS: -5.94 Total: 4.56 kcal Atomic # 6 Polarization: 8.87 SS G_CDS: -0.62 Total: 8.25 kcal Atomic # 7 Polarization: -61.82 SS G_CDS: -0.20 Total: -62.02 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -0.40 Total: -21.04 kcal Atomic # 14 Polarization: 23.16 SS G_CDS: -5.02 Total: 18.14 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -39.92 -6.95 -46.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670369083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.394 kcal (2) G-P(sol) polarization free energy of solvation -39.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.317 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.17 seconds