Wall clock time and date at job start Tue Mar 31 2020 04:20:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.46498 * 120.00500 * 2 1 4 4 C 1.52997 * 109.47499 * 270.00352 * 3 2 1 5 5 C 1.53004 * 109.47253 * 179.97438 * 4 3 2 6 6 N 1.46500 * 109.47057 * 179.97438 * 5 4 3 7 7 C 1.36933 * 119.99668 * 180.02562 * 6 5 4 8 8 H 1.07996 * 120.00148 * 0.02562 * 7 6 5 9 9 C 1.38816 * 119.99720 * 180.02562 * 7 6 5 10 10 N 1.31617 * 120.00143 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99731 * 179.97438 * 9 7 6 12 12 H 1.48502 * 109.47341 * 0.02562 * 11 9 7 13 13 H 1.48503 * 109.46983 * 120.00044 * 11 9 7 14 14 H 1.48497 * 109.47202 * 239.99619 * 11 9 7 15 15 C 1.34782 * 119.99639 * 180.02562 * 2 1 3 16 16 O 1.21281 * 119.99870 * 180.02562 * 15 2 1 17 17 C 1.50695 * 119.99779 * 359.97438 * 15 2 1 18 18 C 1.53001 * 109.46788 * 180.02562 * 17 15 2 19 19 H 1.08996 * 110.66703 * 56.48124 * 18 17 15 20 20 C 1.54236 * 110.60660 * 179.40768 * 18 17 15 21 21 C 1.51315 * 103.55147 * 118.51776 * 20 18 17 22 22 O 1.21235 * 125.39508 * 180.02562 * 21 20 18 23 23 N 1.33875 * 109.21241 * 0.02562 * 21 20 18 24 24 C 1.33884 * 114.46988 * 359.97438 * 23 21 20 25 25 O 1.21228 * 125.39038 * 179.97438 * 24 23 21 26 26 H 1.09004 * 109.47272 * 269.99885 * 1 2 3 27 27 H 1.09011 * 109.46832 * 29.99366 * 1 2 3 28 28 H 1.09000 * 109.47520 * 149.99359 * 1 2 3 29 29 H 1.09000 * 109.46780 * 30.00290 * 3 2 1 30 30 H 1.09007 * 109.47276 * 149.99978 * 3 2 1 31 31 H 1.09000 * 109.47053 * 299.99770 * 4 3 2 32 32 H 1.09004 * 109.47130 * 60.00089 * 4 3 2 33 33 H 1.08995 * 109.47360 * 300.00548 * 5 4 3 34 34 H 1.09004 * 109.46628 * 60.00212 * 5 4 3 35 35 H 0.96997 * 119.99943 * 0.02562 * 6 5 4 36 36 H 0.96992 * 119.99955 * 180.02562 * 10 9 7 37 37 H 1.09003 * 109.47331 * 60.00636 * 17 15 2 38 38 H 1.09000 * 109.47303 * 300.00201 * 17 15 2 39 39 H 1.08995 * 110.60911 * 237.03231 * 20 18 17 40 40 H 1.09001 * 110.60231 * 0.02562 * 20 18 17 41 41 H 0.96993 * 122.76850 * 180.26726 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2686 0.0000 4 6 2.4526 1.7104 -1.4424 5 6 3.2171 3.0357 -1.4424 6 7 3.4618 3.4584 -2.8236 7 6 4.1352 4.6242 -3.0737 8 1 4.4862 5.2319 -2.2528 9 6 4.3666 5.0250 -4.3824 10 7 3.9392 4.2842 -5.3829 11 14 5.2845 6.6157 -4.7236 12 1 5.6560 7.2585 -3.4375 13 1 6.5141 6.3204 -5.5022 14 1 4.4137 7.5324 -5.5024 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1673 -0.0001 17 6 1.3852 -2.4723 -0.0005 18 6 2.3794 -3.6352 -0.0005 19 1 3.0574 -3.5617 0.8497 20 6 1.6348 -4.9859 0.0144 21 6 2.0685 -5.6441 -1.2772 22 8 1.7104 -6.7360 -1.6636 23 7 2.9103 -4.8298 -1.9256 24 6 3.1558 -3.6726 -1.2987 25 8 3.8851 -2.7942 -1.7063 26 1 -0.3634 0.0000 1.0277 27 1 -0.3633 0.8901 -0.5138 28 1 -0.3634 -0.8899 -0.5139 29 1 1.6085 2.0283 0.5139 30 1 3.1500 1.1383 0.5139 31 1 3.0416 0.9508 -1.9563 32 1 1.5001 1.8409 -1.9563 33 1 2.6279 3.7951 -0.9285 34 1 4.1696 2.9056 -0.9284 35 1 3.1469 2.9124 -3.5608 36 1 4.1012 4.5640 -6.2973 37 1 0.7582 -2.5298 -0.8903 38 1 0.7588 -2.5302 0.8897 39 1 1.9425 -5.5841 0.8720 40 1 0.5562 -4.8292 0.0214 41 1 3.3063 -5.0575 -2.7813 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001670369083.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:45 Heat of formation + Delta-G solvation = -120.827775 kcal Electronic energy + Delta-G solvation = -23836.943896 eV Core-core repulsion = 20137.240577 eV Total energy + Delta-G solvation = -3699.703320 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.83286 -40.75884 -39.56936 -37.52383 -36.94626 -36.32666 -34.64386 -33.96353 -31.73060 -29.64490 -27.84296 -26.89637 -25.90593 -24.41802 -22.72751 -22.54020 -21.71562 -19.96908 -19.18324 -18.92039 -18.02729 -17.75490 -17.29669 -16.93963 -16.63127 -16.45067 -15.97035 -15.69475 -15.43924 -15.20326 -15.11682 -14.93599 -14.51923 -13.89044 -13.87578 -13.57054 -13.45527 -13.37802 -13.03576 -12.96586 -12.79296 -12.67568 -12.38601 -12.12486 -12.05325 -11.83671 -11.78929 -11.69190 -11.37676 -11.00679 -10.98743 -10.63140 -9.54121 -9.06300 -7.99134 -5.29667 0.51780 1.44151 1.46714 1.56916 1.75904 1.77964 1.84590 2.13108 2.53588 3.16229 3.24375 3.34226 3.39896 3.72602 3.84803 3.88123 4.09181 4.24099 4.30743 4.45001 4.53233 4.58036 4.62190 4.66888 4.73635 4.81093 4.85522 4.91399 4.95549 5.05082 5.06265 5.28783 5.29219 5.45005 5.63429 5.68768 6.22839 6.35233 6.53593 6.89385 7.27850 7.35562 8.02904 8.26632 9.25137 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.021485 B = 0.002856 C = 0.002637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1302.909990 B = 9801.323978 C =10613.858825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.068 3.932 2 N -0.620 5.620 3 C 0.130 3.870 4 C -0.120 4.120 5 C 0.155 3.845 6 N -0.751 5.751 7 C -0.249 4.249 8 H 0.078 0.922 9 C -0.081 4.081 10 N -0.973 5.973 11 Si 0.981 3.019 12 H -0.263 1.263 13 H -0.294 1.294 14 H -0.288 1.288 15 C 0.485 3.515 16 O -0.563 6.563 17 C -0.118 4.118 18 C -0.103 4.103 19 H 0.136 0.864 20 C -0.132 4.132 21 C 0.531 3.469 22 O -0.526 6.526 23 N -0.686 5.686 24 C 0.514 3.486 25 O -0.500 6.500 26 H 0.086 0.914 27 H 0.069 0.931 28 H 0.094 0.906 29 H 0.105 0.895 30 H 0.063 0.937 31 H 0.029 0.971 32 H 0.065 0.935 33 H 0.036 0.964 34 H 0.011 0.989 35 H 0.371 0.629 36 H 0.252 0.748 37 H 0.116 0.884 38 H 0.164 0.836 39 H 0.155 0.845 40 H 0.161 0.839 41 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.875 -20.349 18.245 30.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 N -0.354 5.354 3 C 0.006 3.994 4 C -0.159 4.159 5 C 0.028 3.972 6 N -0.393 5.393 7 C -0.380 4.380 8 H 0.096 0.904 9 C -0.272 4.272 10 N -0.624 5.624 11 Si 0.809 3.191 12 H -0.188 1.188 13 H -0.221 1.221 14 H -0.215 1.215 15 C 0.274 3.726 16 O -0.440 6.440 17 C -0.157 4.157 18 C -0.125 4.125 19 H 0.154 0.846 20 C -0.170 4.170 21 C 0.321 3.679 22 O -0.401 6.401 23 N -0.351 5.351 24 C 0.302 3.698 25 O -0.371 6.371 26 H 0.104 0.896 27 H 0.088 0.912 28 H 0.113 0.887 29 H 0.123 0.877 30 H 0.082 0.918 31 H 0.048 0.952 32 H 0.083 0.917 33 H 0.054 0.946 34 H 0.029 0.971 35 H 0.202 0.798 36 H 0.061 0.939 37 H 0.134 0.866 38 H 0.182 0.818 39 H 0.173 0.827 40 H 0.179 0.821 41 H 0.250 0.750 Dipole moment (debyes) X Y Z Total from point charges -13.030 -20.236 18.083 30.104 hybrid contribution 1.199 0.690 -1.833 2.297 sum -11.831 -19.546 16.250 28.037 Atomic orbital electron populations 1.22143 0.76725 1.04593 1.03874 1.48007 1.08659 1.05195 1.73519 1.21202 0.97808 0.85724 0.94682 1.21853 0.99694 0.95825 0.98574 1.20714 0.96368 0.94191 0.85921 1.42643 1.68223 1.25438 1.02999 1.19734 1.27295 0.98732 0.92262 0.90376 1.25700 1.03256 1.02887 0.95399 1.69847 1.53304 1.40886 0.98319 0.84971 0.77410 0.78769 0.77984 1.18760 1.22103 1.21471 1.21482 0.88138 0.86950 0.76036 1.90830 1.15963 1.87741 1.49484 1.21795 0.97741 0.87491 1.08716 1.21912 0.98088 0.96431 0.96030 0.84628 1.22704 1.05575 0.93194 0.95548 1.21441 0.75810 0.83252 0.87360 1.90816 1.56561 1.20406 1.72314 1.45042 1.45024 1.19944 1.25072 1.21513 0.80693 0.79851 0.87754 1.90953 1.35976 1.39743 1.70389 0.89571 0.91169 0.88742 0.87695 0.91814 0.95244 0.91656 0.94602 0.97120 0.79801 0.93922 0.86614 0.81829 0.82709 0.82132 0.74952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.66 10.24 127.77 1.31 1.96 16 2 N -0.62 -12.60 2.87 -846.75 -2.43 -15.04 16 3 C 0.13 3.45 5.41 86.38 0.47 3.92 16 4 C -0.12 -4.33 5.65 30.59 0.17 -4.16 16 5 C 0.15 6.75 6.26 86.38 0.54 7.29 16 6 N -0.75 -41.81 5.60 -343.45 -1.92 -43.73 16 7 C -0.25 -14.81 9.99 84.04 0.84 -13.97 16 8 H 0.08 4.43 7.83 -2.91 -0.02 4.41 16 9 C -0.08 -4.88 5.50 84.86 0.47 -4.41 16 10 N -0.97 -62.71 13.06 21.65 0.28 -62.43 16 11 Si 0.98 48.03 29.55 68.60 2.03 50.05 16 12 H -0.26 -12.04 7.11 99.48 0.71 -11.33 16 13 H -0.29 -14.41 7.11 99.48 0.71 -13.70 16 14 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 15 C 0.49 10.88 7.35 87.65 0.64 11.53 16 16 O -0.56 -19.26 13.15 18.96 0.25 -19.01 16 17 C -0.12 -1.03 3.59 29.85 0.11 -0.92 16 18 C -0.10 -1.07 2.72 -10.93 -0.03 -1.10 16 19 H 0.14 1.41 8.03 -2.39 -0.02 1.39 16 20 C -0.13 -0.40 6.67 30.46 0.20 -0.20 16 21 C 0.53 7.06 8.55 87.99 0.75 7.81 16 22 O -0.53 -10.87 18.02 -2.89 -0.05 -10.92 16 23 N -0.69 -11.34 5.48 -427.78 -2.34 -13.69 16 24 C 0.51 10.97 7.71 87.99 0.68 11.65 16 25 O -0.50 -17.40 15.43 19.12 0.29 -17.10 16 26 H 0.09 0.38 8.14 -2.38 -0.02 0.36 16 27 H 0.07 0.79 8.07 -2.38 -0.02 0.77 16 28 H 0.09 0.43 6.44 -2.39 -0.02 0.41 16 29 H 0.10 2.16 8.07 -2.39 -0.02 2.14 16 30 H 0.06 1.97 7.42 -2.38 -0.02 1.95 16 31 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 32 H 0.06 2.25 8.14 -2.39 -0.02 2.23 16 33 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 35 H 0.37 22.06 7.67 -92.71 -0.71 21.35 16 36 H 0.25 15.57 8.31 -92.71 -0.77 14.80 16 37 H 0.12 0.68 7.40 -2.39 -0.02 0.66 16 38 H 0.16 -0.22 8.11 -2.39 -0.02 -0.23 16 39 H 0.16 -0.29 8.14 -2.39 -0.02 -0.31 16 40 H 0.16 -0.57 7.74 -2.39 -0.02 -0.59 16 41 H 0.41 6.75 8.96 -92.71 -0.83 5.92 16 Total: -1.00 -93.99 347.03 1.78 -92.21 By element: Atomic # 1 Polarization: 20.72 SS G_CDS: -0.48 Total: 20.25 kcal Atomic # 6 Polarization: 13.25 SS G_CDS: 6.15 Total: 19.40 kcal Atomic # 7 Polarization: -128.46 SS G_CDS: -6.42 Total: -134.88 kcal Atomic # 8 Polarization: -47.53 SS G_CDS: 0.49 Total: -47.03 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.05 kcal Total: -93.99 1.78 -92.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001670369083.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.614 kcal (2) G-P(sol) polarization free energy of solvation -93.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.603 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.776 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -92.214 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds