Wall clock time and date at job start Tue Mar 31 2020 04:13:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 120.00219 * 2 1 4 4 N 1.34775 * 119.99612 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99681 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.47197 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99948 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00087 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00007 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.77534 * 31.47177 * 9 8 6 11 11 C 1.55056 * 110.87076 * 267.70906 * 9 8 6 12 12 O 1.44604 * 103.66832 * 205.32056 * 11 9 8 13 13 C 1.42834 * 106.73730 * 39.09251 * 12 11 9 14 14 C 1.52649 * 115.96943 * 202.46991 * 13 12 11 15 15 N 1.47226 * 87.78450 * 218.40508 * 14 13 12 16 16 C 1.36927 * 135.97019 * 206.37798 * 15 14 13 17 17 H 1.08006 * 120.00179 * 6.48240 * 16 15 14 18 18 C 1.38815 * 120.00379 * 186.48545 * 16 15 14 19 19 N 1.31623 * 119.99457 * 6.41318 * 18 16 15 20 20 Si 1.86799 * 120.00066 * 186.41286 * 18 16 15 21 21 H 1.48494 * 109.47199 * 265.01504 * 20 18 16 22 22 H 1.48494 * 109.47283 * 25.02312 * 20 18 16 23 23 H 1.48503 * 109.46714 * 145.01728 * 20 18 16 24 24 C 1.47220 * 88.06380 * 26.63410 * 15 14 13 25 25 C 1.53333 * 108.32566 * 334.30051 * 13 12 11 26 26 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46872 * 299.99737 * 1 2 3 28 28 H 1.08998 * 109.47340 * 60.00045 * 1 2 3 29 29 H 0.96991 * 120.00385 * 359.97438 * 4 2 1 30 30 H 1.08991 * 109.47258 * 59.99319 * 5 4 2 31 31 H 1.09006 * 109.46429 * 299.99677 * 5 4 2 32 32 H 0.96999 * 119.99987 * 359.97438 * 8 6 5 33 33 H 1.09001 * 110.58601 * 323.86657 * 11 9 8 34 34 H 1.09002 * 110.58703 * 86.77734 * 11 9 8 35 35 H 1.09005 * 113.49880 * 103.68011 * 14 13 12 36 36 H 1.08993 * 113.56001 * 333.14639 * 14 13 12 37 37 H 0.96996 * 119.99426 * 180.02562 * 19 18 16 38 38 H 1.08998 * 113.49939 * 88.09171 * 24 15 14 39 39 H 1.09002 * 113.50289 * 218.63708 * 24 15 14 40 40 H 1.09004 * 110.55634 * 120.19461 * 25 13 12 41 41 H 1.09002 * 110.56452 * 243.04112 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1482 -2.5880 -0.0013 7 8 3.3600 -3.5099 -0.0022 8 7 5.4733 -2.8343 -0.0016 9 6 5.9616 -4.2155 -0.0024 10 1 5.2709 -4.8695 -0.5347 11 6 6.2005 -4.7178 1.4450 12 8 7.1977 -5.7530 1.2872 13 6 8.1156 -5.2921 0.2947 14 6 8.9216 -6.3715 -0.4232 15 7 10.0730 -5.4546 -0.3882 16 6 11.2023 -5.2634 -1.1385 17 1 11.3427 -5.8184 -2.0543 18 6 12.1670 -4.3563 -0.7220 19 7 12.0588 -3.7739 0.4534 20 14 13.6187 -3.9622 -1.8296 21 1 14.7723 -4.8200 -1.4575 22 1 13.2464 -4.2194 -3.2439 23 1 13.9913 -2.5338 -1.6677 24 6 9.4815 -4.8376 0.8104 25 6 7.3833 -4.2983 -0.6149 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6959 -2.0072 -0.0005 30 1 4.0089 -0.6540 0.8904 31 1 4.0094 -0.6528 -0.8896 32 1 6.1036 -2.0971 -0.0013 33 1 6.5808 -3.9117 2.0725 34 1 5.2827 -5.1305 1.8638 35 1 8.5645 -6.5824 -1.4313 36 1 9.0665 -7.2741 0.1703 37 1 12.7326 -3.1397 0.7443 38 1 9.7783 -5.3226 1.7403 39 1 9.5968 -3.7542 0.8435 40 1 7.8698 -3.3233 -0.5866 41 1 7.3388 -4.6755 -1.6366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001673543528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:04 Heat of formation + Delta-G solvation = -52.905976 kcal Electronic energy + Delta-G solvation = -23856.065136 eV Core-core repulsion = 20159.307127 eV Total energy + Delta-G solvation = -3696.758009 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.65294 -39.93344 -39.11694 -36.49336 -34.89714 -34.58925 -32.17759 -31.20569 -30.23814 -28.28963 -27.05742 -25.84135 -24.82500 -22.29560 -21.80943 -20.93297 -20.83038 -18.91180 -18.09223 -17.03441 -16.81040 -16.47493 -16.25439 -15.89224 -15.30582 -15.18913 -15.08818 -14.82998 -14.15371 -13.93544 -13.59573 -13.43977 -13.12139 -13.01167 -12.91976 -12.66509 -12.38702 -12.31574 -11.69192 -11.54037 -11.08663 -10.99454 -10.85301 -10.70020 -10.54599 -10.32309 -10.24700 -10.12712 -9.59458 -9.55535 -9.26025 -8.85878 -8.79413 -6.98760 -5.86802 -3.18550 2.21032 2.30767 2.48778 3.15113 3.34091 3.39318 3.41522 4.14370 4.28006 4.45311 4.51057 4.69431 4.82667 4.87970 4.95466 5.03084 5.05249 5.06753 5.26693 5.28337 5.29351 5.43589 5.49691 5.79490 5.81599 5.92902 5.99177 6.18175 6.28699 6.39173 6.53838 6.56267 6.89137 7.07616 7.12446 7.17266 7.39108 7.52947 7.82057 7.85641 7.86914 8.94559 9.60836 10.53827 11.31912 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.002885 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.515359 B = 9702.036911 C =10523.250601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.512 3.488 3 O -0.549 6.549 4 N -0.718 5.718 5 C 0.096 3.904 6 C 0.511 3.489 7 O -0.540 6.540 8 N -0.709 5.709 9 C 0.108 3.892 10 H 0.106 0.894 11 C 0.041 3.959 12 O -0.358 6.358 13 C 0.044 3.956 14 C 0.126 3.874 15 N -0.602 5.602 16 C -0.218 4.218 17 H 0.084 0.916 18 C -0.006 4.006 19 N -0.918 5.918 20 Si 0.914 3.086 21 H -0.288 1.288 22 H -0.279 1.279 23 H -0.289 1.289 24 C 0.156 3.844 25 C -0.115 4.115 26 H 0.078 0.922 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.413 0.587 30 H 0.101 0.899 31 H 0.101 0.899 32 H 0.408 0.592 33 H 0.062 0.938 34 H 0.090 0.910 35 H 0.046 0.954 36 H 0.042 0.958 37 H 0.255 0.745 38 H 0.037 0.963 39 H 0.062 0.938 40 H 0.087 0.913 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.626 4.710 -0.209 21.158 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.300 3.700 3 O -0.427 6.427 4 N -0.375 5.375 5 C -0.031 4.031 6 C 0.296 3.704 7 O -0.417 6.417 8 N -0.362 5.362 9 C 0.003 3.997 10 H 0.124 0.876 11 C -0.037 4.037 12 O -0.275 6.275 13 C 0.003 3.997 14 C 0.000 4.000 15 N -0.330 5.330 16 C -0.345 4.345 17 H 0.101 0.899 18 C -0.203 4.203 19 N -0.564 5.564 20 Si 0.744 3.256 21 H -0.215 1.215 22 H -0.205 1.205 23 H -0.215 1.215 24 C 0.030 3.970 25 C -0.153 4.153 26 H 0.097 0.903 27 H 0.115 0.885 28 H 0.114 0.886 29 H 0.251 0.749 30 H 0.119 0.881 31 H 0.119 0.881 32 H 0.243 0.757 33 H 0.081 0.919 34 H 0.108 0.892 35 H 0.064 0.936 36 H 0.060 0.940 37 H 0.065 0.935 38 H 0.055 0.945 39 H 0.080 0.920 40 H 0.106 0.894 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -20.407 4.722 -0.189 20.947 hybrid contribution 1.124 0.261 -0.454 1.240 sum -19.283 4.983 -0.643 19.927 Atomic orbital electron populations 1.21829 0.91112 1.04502 1.05437 1.20852 0.90804 0.83019 0.75372 1.90746 1.70737 1.31405 1.49807 1.45877 1.05968 1.10017 1.75620 1.21083 0.82529 0.94272 1.05217 1.20513 0.82892 0.91024 0.75924 1.90703 1.55139 1.45925 1.49958 1.45879 1.06704 1.09192 1.74403 1.22773 0.96709 0.82484 0.97695 0.87560 1.23830 0.92541 0.91820 0.95499 1.88793 1.39150 1.40101 1.59423 1.23824 0.89833 0.96714 0.89308 1.22433 0.87309 0.93207 0.97057 1.45419 1.22405 1.35383 1.29773 1.18907 0.94157 1.20225 1.01221 0.89870 1.24850 0.98332 1.00312 0.96856 1.69859 1.36112 1.31828 1.18644 0.86077 0.82303 0.77539 0.79701 1.21520 1.20451 1.21544 1.22391 0.85060 0.98846 0.90705 1.22601 0.91846 1.00968 0.99860 0.90341 0.88544 0.88559 0.74908 0.88067 0.88099 0.75656 0.91949 0.89159 0.93553 0.94022 0.93529 0.94492 0.92005 0.89427 0.89600 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 10.39 36.01 0.37 -0.48 16 2 C 0.51 4.71 7.94 -10.99 -0.09 4.62 16 3 O -0.55 -7.34 17.10 5.56 0.10 -7.25 16 4 N -0.72 -6.07 5.53 -61.47 -0.34 -6.41 16 5 C 0.10 0.82 6.15 -5.19 -0.03 0.79 16 6 C 0.51 5.27 7.90 -10.99 -0.09 5.18 16 7 O -0.54 -7.09 15.31 5.55 0.08 -7.01 16 8 N -0.71 -7.16 5.19 -51.72 -0.27 -7.43 16 9 C 0.11 1.38 3.51 -65.77 -0.23 1.15 16 10 H 0.11 1.43 7.54 -51.93 -0.39 1.04 16 11 C 0.04 0.58 7.42 38.24 0.28 0.86 16 12 O -0.36 -6.33 11.32 -35.23 -0.40 -6.73 16 13 C 0.04 0.82 1.66 -90.67 -0.15 0.67 16 14 C 0.13 2.63 8.20 -8.04 -0.07 2.56 16 15 N -0.60 -15.17 3.73 -184.62 -0.69 -15.85 16 16 C -0.22 -5.96 10.73 -15.06 -0.16 -6.13 16 17 H 0.08 2.19 7.84 -52.48 -0.41 1.77 16 18 C -0.01 -0.18 5.50 -17.43 -0.10 -0.27 16 19 N -0.92 -26.71 11.82 55.49 0.66 -26.05 16 20 Si 0.91 21.59 29.56 -169.99 -5.02 16.56 16 21 H -0.29 -6.84 7.11 56.52 0.40 -6.43 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 24 C 0.16 3.63 6.73 -7.90 -0.05 3.57 16 25 C -0.11 -1.74 6.20 -25.49 -0.16 -1.90 16 26 H 0.08 0.25 7.91 -51.93 -0.41 -0.16 16 27 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.10 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.41 3.16 7.27 -40.82 -0.30 2.86 16 30 H 0.10 0.80 8.14 -51.93 -0.42 0.37 16 31 H 0.10 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.41 3.34 8.41 -40.82 -0.34 3.00 16 33 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.17 8.14 -51.93 -0.42 0.74 16 35 H 0.05 0.89 7.91 -51.93 -0.41 0.48 16 36 H 0.04 0.88 8.14 -51.93 -0.42 0.46 16 37 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 38 H 0.04 0.93 8.14 -51.93 -0.42 0.50 16 39 H 0.06 1.52 7.40 -51.93 -0.38 1.14 16 40 H 0.09 1.35 7.45 -51.93 -0.39 0.96 16 41 H 0.09 1.29 7.82 -51.93 -0.41 0.88 16 LS Contribution 346.20 15.07 5.22 5.22 Total: -1.00 -34.45 346.20 -7.09 -41.54 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: -5.96 Total: 2.78 kcal Atomic # 6 Polarization: 11.09 SS G_CDS: -0.46 Total: 10.62 kcal Atomic # 7 Polarization: -55.10 SS G_CDS: -0.64 Total: -55.74 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.22 Total: -20.99 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.22 Total: 5.22 kcal Total: -34.45 -7.09 -41.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673543528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.362 kcal (2) G-P(sol) polarization free energy of solvation -34.454 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.906 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds