Wall clock time and date at job start Tue Mar 31 2020 04:13:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 O 1.21279 * 120.00219 * 2 1 4 4 N 1.34775 * 119.99612 * 180.02562 * 2 1 3 5 5 C 1.46504 * 119.99681 * 180.02562 * 4 2 1 6 6 C 1.50697 * 109.47197 * 180.02562 * 5 4 2 7 7 O 1.21286 * 119.99948 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00087 * 179.97438 * 6 5 4 9 9 C 1.46496 * 120.00007 * 179.97438 * 8 6 5 10 10 H 1.08998 * 110.77534 * 31.47177 * 9 8 6 11 11 C 1.55056 * 110.87076 * 267.70906 * 9 8 6 12 12 O 1.44604 * 103.66832 * 205.32056 * 11 9 8 13 13 C 1.42834 * 106.73730 * 39.09251 * 12 11 9 14 14 C 1.52649 * 115.96943 * 202.46991 * 13 12 11 15 15 N 1.47226 * 87.78450 * 218.40508 * 14 13 12 16 16 C 1.36927 * 135.97019 * 206.37798 * 15 14 13 17 17 H 1.08006 * 120.00179 * 6.48240 * 16 15 14 18 18 C 1.38815 * 120.00379 * 186.48545 * 16 15 14 19 19 N 1.31623 * 119.99457 * 6.41318 * 18 16 15 20 20 Si 1.86799 * 120.00066 * 186.41286 * 18 16 15 21 21 H 1.48494 * 109.47199 * 265.01504 * 20 18 16 22 22 H 1.48494 * 109.47283 * 25.02312 * 20 18 16 23 23 H 1.48503 * 109.46714 * 145.01728 * 20 18 16 24 24 C 1.47220 * 88.06380 * 26.63410 * 15 14 13 25 25 C 1.53333 * 108.32566 * 334.30051 * 13 12 11 26 26 H 1.08996 * 109.47136 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46872 * 299.99737 * 1 2 3 28 28 H 1.08998 * 109.47340 * 60.00045 * 1 2 3 29 29 H 0.96991 * 120.00385 * 359.97438 * 4 2 1 30 30 H 1.08991 * 109.47258 * 59.99319 * 5 4 2 31 31 H 1.09006 * 109.46429 * 299.99677 * 5 4 2 32 32 H 0.96999 * 119.99987 * 359.97438 * 8 6 5 33 33 H 1.09001 * 110.58601 * 323.86657 * 11 9 8 34 34 H 1.09002 * 110.58703 * 86.77734 * 11 9 8 35 35 H 1.09005 * 113.49880 * 103.68011 * 14 13 12 36 36 H 1.08993 * 113.56001 * 333.14639 * 14 13 12 37 37 H 0.96996 * 119.99426 * 180.02562 * 19 18 16 38 38 H 1.08998 * 113.49939 * 88.09171 * 24 15 14 39 39 H 1.09002 * 113.50289 * 218.63708 * 24 15 14 40 40 H 1.09004 * 110.55634 * 120.19461 * 25 13 12 41 41 H 1.09002 * 110.56452 * 243.04112 * 25 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 8 2.1135 1.0503 0.0000 4 7 2.1808 -1.1672 -0.0005 5 6 3.6459 -1.1673 0.0000 6 6 4.1482 -2.5880 -0.0013 7 8 3.3600 -3.5099 -0.0022 8 7 5.4733 -2.8343 -0.0016 9 6 5.9616 -4.2155 -0.0024 10 1 5.2709 -4.8695 -0.5347 11 6 6.2005 -4.7178 1.4450 12 8 7.1977 -5.7530 1.2872 13 6 8.1156 -5.2921 0.2947 14 6 8.9216 -6.3715 -0.4232 15 7 10.0730 -5.4546 -0.3882 16 6 11.2023 -5.2634 -1.1385 17 1 11.3427 -5.8184 -2.0543 18 6 12.1670 -4.3563 -0.7220 19 7 12.0588 -3.7739 0.4534 20 14 13.6187 -3.9622 -1.8296 21 1 14.7723 -4.8200 -1.4575 22 1 13.2464 -4.2194 -3.2439 23 1 13.9913 -2.5338 -1.6677 24 6 9.4815 -4.8376 0.8104 25 6 7.3833 -4.2983 -0.6149 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.6959 -2.0072 -0.0005 30 1 4.0089 -0.6540 0.8904 31 1 4.0094 -0.6528 -0.8896 32 1 6.1036 -2.0971 -0.0013 33 1 6.5808 -3.9117 2.0725 34 1 5.2827 -5.1305 1.8638 35 1 8.5645 -6.5824 -1.4313 36 1 9.0665 -7.2741 0.1703 37 1 12.7326 -3.1397 0.7443 38 1 9.7783 -5.3226 1.7403 39 1 9.5968 -3.7542 0.8435 40 1 7.8698 -3.3233 -0.5866 41 1 7.3388 -4.6755 -1.6366 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001673543528.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:13:03 Heat of formation + Delta-G solvation = -80.759276 kcal Electronic energy + Delta-G solvation = -23857.272946 eV Core-core repulsion = 20159.307127 eV Total energy + Delta-G solvation = -3697.965819 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.77095 -41.01036 -40.06775 -38.02760 -35.89288 -35.45240 -34.19312 -32.10845 -31.05999 -29.93460 -27.92953 -27.34200 -26.59384 -24.02060 -22.93943 -21.76233 -21.63216 -20.50290 -18.90883 -18.72441 -17.93116 -17.39250 -17.07346 -16.99121 -16.77534 -16.57064 -16.30414 -15.95146 -15.66953 -15.11624 -14.76106 -14.51665 -14.27737 -14.14453 -14.02772 -13.85361 -13.36436 -13.26846 -12.91491 -12.86925 -12.83586 -12.65149 -12.53096 -12.35938 -11.99075 -11.81874 -11.49483 -11.18429 -11.07256 -10.88620 -10.48057 -10.29238 -10.11962 -9.01048 -7.96174 -5.29832 1.38587 1.46984 1.48135 1.57920 1.60747 1.69036 2.40373 2.44823 2.89981 3.24749 3.34965 3.46984 3.60332 3.62202 3.70095 3.96375 4.06087 4.11789 4.29822 4.36501 4.54045 4.65040 4.67761 4.69302 4.74976 4.82075 4.86296 4.91000 4.95643 5.04384 5.07312 5.14022 5.27514 5.35074 5.42671 5.82374 6.04997 6.34219 6.48737 6.85316 7.00016 7.17776 7.54094 8.53536 9.22882 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.022584 B = 0.002885 C = 0.002660 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1239.515359 B = 9702.036911 C =10523.250601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.508 3.492 3 O -0.597 6.597 4 N -0.715 5.715 5 C 0.099 3.901 6 C 0.519 3.481 7 O -0.565 6.565 8 N -0.702 5.702 9 C 0.127 3.873 10 H 0.108 0.892 11 C 0.037 3.963 12 O -0.372 6.372 13 C 0.071 3.929 14 C 0.122 3.878 15 N -0.627 5.627 16 C -0.229 4.229 17 H 0.091 0.909 18 C -0.064 4.064 19 N -0.953 5.953 20 Si 0.983 3.017 21 H -0.289 1.289 22 H -0.263 1.263 23 H -0.292 1.292 24 C 0.153 3.847 25 C -0.108 4.108 26 H 0.100 0.900 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.418 0.582 30 H 0.110 0.890 31 H 0.109 0.891 32 H 0.419 0.581 33 H 0.068 0.932 34 H 0.106 0.894 35 H 0.069 0.931 36 H 0.037 0.963 37 H 0.250 0.750 38 H 0.008 0.992 39 H 0.041 0.959 40 H 0.085 0.915 41 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.316 4.869 -1.332 22.880 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.298 3.702 3 O -0.478 6.478 4 N -0.371 5.371 5 C -0.029 4.029 6 C 0.306 3.694 7 O -0.444 6.444 8 N -0.355 5.355 9 C 0.021 3.979 10 H 0.126 0.874 11 C -0.041 4.041 12 O -0.289 6.289 13 C 0.030 3.970 14 C -0.003 4.003 15 N -0.355 5.355 16 C -0.357 4.357 17 H 0.108 0.892 18 C -0.258 4.258 19 N -0.601 5.601 20 Si 0.810 3.190 21 H -0.216 1.216 22 H -0.188 1.188 23 H -0.219 1.219 24 C 0.027 3.973 25 C -0.146 4.146 26 H 0.119 0.881 27 H 0.123 0.877 28 H 0.123 0.877 29 H 0.257 0.743 30 H 0.128 0.872 31 H 0.127 0.873 32 H 0.256 0.744 33 H 0.086 0.914 34 H 0.124 0.876 35 H 0.087 0.913 36 H 0.055 0.945 37 H 0.059 0.941 38 H 0.026 0.974 39 H 0.059 0.941 40 H 0.104 0.896 41 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -22.130 4.850 -1.322 22.694 hybrid contribution 1.600 0.138 -0.042 1.607 sum -20.530 4.988 -1.364 21.171 Atomic orbital electron populations 1.21873 0.87873 1.06286 1.06232 1.21577 0.92356 0.82240 0.74058 1.90724 1.71970 1.32945 1.52165 1.45932 1.05963 1.10219 1.74940 1.21098 0.82821 0.92905 1.06044 1.20712 0.82429 0.91385 0.74916 1.90698 1.55735 1.46848 1.51134 1.45746 1.07063 1.08489 1.74200 1.22447 0.95196 0.83859 0.96398 0.87439 1.24060 0.92130 0.91333 0.96535 1.88773 1.39578 1.41394 1.59191 1.23363 0.88589 0.95876 0.89167 1.22560 0.86178 0.93047 0.98515 1.45721 1.22813 1.36964 1.30004 1.19328 0.94844 1.19813 1.01669 0.89176 1.25708 1.01196 1.00575 0.98275 1.70041 1.36981 1.32638 1.20458 0.85008 0.78668 0.76723 0.78591 1.21649 1.18784 1.21866 1.22328 0.88381 0.97194 0.89416 1.22518 0.92799 0.99782 0.99517 0.88093 0.87677 0.87690 0.74274 0.87226 0.87279 0.74373 0.91388 0.87597 0.91321 0.94483 0.94091 0.97417 0.94052 0.89617 0.88789 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 10.39 71.24 0.74 -0.55 16 2 C 0.51 8.59 7.94 87.66 0.70 9.28 16 3 O -0.60 -15.55 17.10 -3.03 -0.05 -15.60 16 4 N -0.71 -10.76 5.53 -466.79 -2.58 -13.34 16 5 C 0.10 1.50 6.15 85.63 0.53 2.02 16 6 C 0.52 9.57 7.90 87.66 0.69 10.26 16 7 O -0.57 -13.59 15.31 -3.05 -0.05 -13.64 16 8 N -0.70 -12.63 5.19 -435.94 -2.26 -14.89 16 9 C 0.13 2.96 3.51 46.39 0.16 3.12 16 10 H 0.11 2.60 7.54 -2.39 -0.02 2.58 16 11 C 0.04 0.96 7.42 72.69 0.54 1.50 16 12 O -0.37 -12.81 11.32 -148.98 -1.69 -14.50 16 13 C 0.07 2.62 1.66 -10.82 -0.02 2.60 16 14 C 0.12 5.03 8.20 83.40 0.68 5.71 16 15 N -0.63 -31.92 3.73 -739.12 -2.75 -34.67 16 16 C -0.23 -12.56 10.73 84.04 0.90 -11.66 16 17 H 0.09 4.68 7.84 -2.91 -0.02 4.66 16 18 C -0.06 -3.58 5.50 84.86 0.47 -3.12 16 19 N -0.95 -56.78 11.82 21.65 0.26 -56.52 16 20 Si 0.98 44.56 29.56 68.60 2.03 46.59 16 21 H -0.29 -13.08 7.11 99.48 0.71 -12.38 16 22 H -0.26 -11.15 7.11 99.48 0.71 -10.44 16 23 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 24 C 0.15 7.32 6.73 83.49 0.56 7.88 16 25 C -0.11 -3.11 6.20 31.40 0.19 -2.92 16 26 H 0.10 0.34 7.91 -2.39 -0.02 0.32 16 27 H 0.10 0.68 8.14 -2.39 -0.02 0.67 16 28 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.42 5.51 7.27 -92.72 -0.67 4.84 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 1.53 8.14 -2.38 -0.02 1.51 16 32 H 0.42 5.98 8.41 -92.71 -0.78 5.20 16 33 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 34 H 0.11 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.07 2.51 7.91 -2.38 -0.02 2.49 16 36 H 0.04 1.56 8.14 -2.39 -0.02 1.55 16 37 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 39 H 0.04 2.11 7.40 -2.39 -0.02 2.09 16 40 H 0.09 2.54 7.45 -2.39 -0.02 2.52 16 41 H 0.09 2.61 7.82 -2.39 -0.02 2.59 16 Total: -1.00 -75.09 346.20 -1.34 -76.43 By element: Atomic # 1 Polarization: 16.40 SS G_CDS: -0.39 Total: 16.00 kcal Atomic # 6 Polarization: 18.00 SS G_CDS: 6.15 Total: 24.15 kcal Atomic # 7 Polarization: -112.09 SS G_CDS: -7.34 Total: -119.43 kcal Atomic # 8 Polarization: -41.95 SS G_CDS: -1.78 Total: -43.74 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.59 kcal Total: -75.09 -1.34 -76.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001673543528.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -4.328 kcal (2) G-P(sol) polarization free energy of solvation -75.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.418 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.341 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.431 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds