Wall clock time and date at job start Tue Mar 31 2020 04:20:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99926 * 2 1 4 4 C 1.52997 * 109.47247 * 270.00281 * 3 2 1 5 5 C 1.53002 * 109.47223 * 180.02562 * 4 3 2 6 6 N 1.46494 * 109.47512 * 179.97438 * 5 4 3 7 7 C 1.36935 * 120.00645 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99272 * 0.02562 * 7 6 5 9 9 C 1.38808 * 120.00521 * 179.97438 * 7 6 5 10 10 N 1.31614 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00073 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47338 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47271 * 120.00100 * 11 9 7 14 14 H 1.48503 * 109.47638 * 240.00049 * 11 9 7 15 15 C 1.34777 * 119.99557 * 180.02562 * 2 1 3 16 16 O 1.21281 * 119.99360 * 179.97438 * 15 2 1 17 17 C 1.50696 * 120.00370 * 0.02562 * 15 2 1 18 18 C 1.53238 * 109.62061 * 180.02562 * 17 15 2 19 19 C 1.50587 * 109.16297 * 175.52259 * 18 17 15 20 20 O 1.21226 * 119.36503 * 150.90519 * 19 18 17 21 21 N 1.34148 * 121.27859 * 330.92025 * 19 18 17 22 22 C 1.34138 * 122.58329 * 0.81242 * 21 19 18 23 23 O 1.21237 * 119.35601 * 179.17315 * 22 21 19 24 24 C 1.50591 * 121.27961 * 358.90555 * 22 21 19 25 25 H 1.09007 * 109.47199 * 269.99790 * 1 2 3 26 26 H 1.09007 * 109.47391 * 29.99628 * 1 2 3 27 27 H 1.09001 * 109.47518 * 149.99959 * 1 2 3 28 28 H 1.09001 * 109.47439 * 30.00490 * 3 2 1 29 29 H 1.09002 * 109.47313 * 149.99914 * 3 2 1 30 30 H 1.08998 * 109.47353 * 299.99999 * 4 3 2 31 31 H 1.08999 * 109.47538 * 60.00053 * 4 3 2 32 32 H 1.09001 * 109.47300 * 300.00109 * 5 4 3 33 33 H 1.09002 * 109.47476 * 59.99547 * 5 4 3 34 34 H 0.97001 * 119.99976 * 0.02562 * 6 5 4 35 35 H 0.97007 * 120.00172 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.62329 * 59.63146 * 17 15 2 37 37 H 1.08999 * 109.52392 * 55.61484 * 18 17 15 38 38 H 1.09002 * 109.52105 * 295.42629 * 18 17 15 39 39 H 0.97001 * 118.70406 * 180.51978 * 21 19 18 40 40 H 1.09000 * 109.74987 * 269.60501 * 24 22 21 41 41 H 1.09003 * 109.40216 * 149.35211 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2180 3.0351 -1.4425 6 7 3.4626 3.4578 -2.8236 7 6 4.1359 4.6237 -3.0739 8 1 4.4868 5.2314 -2.2529 9 6 4.3681 5.0239 -4.3825 10 7 3.9409 4.2831 -5.3829 11 14 5.2859 6.6147 -4.7238 12 1 5.6562 7.2583 -3.4377 13 1 6.5162 6.3195 -5.5013 14 1 4.4155 7.5310 -5.5037 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1672 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 6 2.3781 -3.6397 -0.0014 19 6 1.6179 -4.9349 0.1084 20 8 2.0828 -5.9406 -0.3836 21 7 0.4361 -4.9976 0.7401 22 6 -0.1452 -3.9226 1.2932 23 8 -1.2220 -4.0431 1.8371 24 6 0.5165 -2.5704 1.2569 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8901 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0415 0.9508 -1.9564 31 1 1.5000 1.8408 -1.9563 32 1 2.6293 3.7950 -0.9284 33 1 4.1704 2.9044 -0.9287 34 1 3.1471 2.9122 -3.5609 35 1 4.1029 4.5629 -6.2975 36 1 0.7531 -2.5292 -0.8878 37 1 3.0554 -3.5417 0.8469 38 1 2.9508 -3.6309 -0.9288 39 1 -0.0179 -5.8530 0.7953 40 1 1.1406 -2.4418 2.1413 41 1 -0.2479 -1.7937 1.2333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699541965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:41 Heat of formation + Delta-G solvation = -95.871677 kcal Electronic energy + Delta-G solvation = -23758.401177 eV Core-core repulsion = 20059.780035 eV Total energy + Delta-G solvation = -3698.621142 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.10766 -40.18860 -39.30690 -36.48845 -35.94148 -34.99812 -34.27049 -32.21665 -29.99575 -29.27536 -27.23966 -26.39220 -24.41734 -23.68928 -22.62650 -21.00710 -19.92982 -19.49786 -18.27805 -18.00693 -17.40011 -17.06845 -16.44391 -16.16906 -15.77871 -15.16768 -14.89240 -14.88315 -14.71334 -14.49422 -14.36612 -13.72113 -13.33993 -13.25776 -13.05438 -12.90669 -12.65562 -12.05804 -12.00821 -11.82947 -11.78045 -11.29611 -10.97238 -10.87953 -10.79082 -10.75815 -10.69389 -10.46614 -10.08569 -9.95557 -9.73385 -8.88156 -8.87419 -6.92626 -5.76739 -3.05598 0.97638 2.17226 2.23487 2.28651 2.69128 3.39993 3.43386 3.48837 3.51269 3.75721 3.86291 4.04118 4.35864 4.46287 4.59299 4.71840 4.79597 4.89782 4.99307 5.13550 5.15946 5.31131 5.36062 5.41341 5.49677 5.55670 5.61491 5.80726 5.99909 6.23894 6.29343 6.34270 6.36867 6.81697 6.82734 6.83565 7.08496 7.29680 7.70111 7.84670 8.42165 9.53179 10.11298 10.45558 11.46371 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.002537 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.652466 B =11032.207817 C =11498.667306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.067 3.933 2 N -0.610 5.610 3 C 0.118 3.882 4 C -0.140 4.140 5 C 0.156 3.844 6 N -0.734 5.734 7 C -0.239 4.239 8 H 0.071 0.929 9 C -0.016 4.016 10 N -0.934 5.934 11 Si 0.908 3.092 12 H -0.280 1.280 13 H -0.291 1.291 14 H -0.291 1.291 15 C 0.521 3.479 16 O -0.522 6.522 17 C -0.114 4.114 18 C -0.123 4.123 19 C 0.527 3.473 20 O -0.496 6.496 21 N -0.677 5.677 22 C 0.531 3.469 23 O -0.499 6.499 24 C -0.146 4.146 25 H 0.063 0.937 26 H 0.081 0.919 27 H 0.072 0.928 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.066 0.934 31 H 0.062 0.938 32 H 0.018 0.982 33 H 0.020 0.980 34 H 0.383 0.617 35 H 0.255 0.745 36 H 0.115 0.885 37 H 0.123 0.877 38 H 0.125 0.875 39 H 0.413 0.587 40 H 0.120 0.880 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.857 -16.389 15.637 25.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 N -0.342 5.342 3 C -0.004 4.004 4 C -0.179 4.179 5 C 0.028 3.972 6 N -0.378 5.378 7 C -0.370 4.370 8 H 0.089 0.911 9 C -0.211 4.211 10 N -0.583 5.583 11 Si 0.739 3.261 12 H -0.205 1.205 13 H -0.218 1.218 14 H -0.219 1.219 15 C 0.307 3.693 16 O -0.398 6.398 17 C -0.135 4.135 18 C -0.163 4.163 19 C 0.316 3.684 20 O -0.368 6.368 21 N -0.342 5.342 22 C 0.319 3.681 23 O -0.371 6.371 24 C -0.186 4.186 25 H 0.081 0.919 26 H 0.100 0.900 27 H 0.090 0.910 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.085 0.915 31 H 0.081 0.919 32 H 0.036 0.964 33 H 0.038 0.962 34 H 0.217 0.783 35 H 0.064 0.936 36 H 0.133 0.867 37 H 0.141 0.859 38 H 0.144 0.856 39 H 0.253 0.747 40 H 0.138 0.862 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.321 -16.599 15.687 25.063 hybrid contribution 0.038 0.358 -0.600 0.700 sum -10.283 -16.241 15.087 24.436 Atomic orbital electron populations 1.22054 0.79570 1.03991 1.01958 1.47873 1.07031 1.06365 1.72976 1.21565 0.97551 0.83101 0.98217 1.22063 1.01160 0.99106 0.95537 1.20535 0.96037 0.91829 0.88775 1.42356 1.68332 1.26025 1.01081 1.19285 1.27755 0.98129 0.91826 0.91087 1.24757 1.01727 0.99084 0.95572 1.69673 1.51578 1.38877 0.98148 0.86102 0.79183 0.83052 0.77770 1.20529 1.21836 1.21865 1.20012 0.87829 0.84592 0.76903 1.90783 1.13362 1.86922 1.48695 1.21504 0.97735 0.94142 1.00163 1.21801 0.97842 0.87956 1.08735 1.20977 0.79950 0.91857 0.75593 1.90820 1.65888 1.36876 1.43194 1.44914 1.22312 1.14060 1.52961 1.20770 0.84894 0.86354 0.76046 1.90823 1.20312 1.85699 1.40314 1.22242 1.01666 0.94708 0.99962 0.91852 0.90008 0.90964 0.90184 0.89502 0.91512 0.91929 0.96399 0.96192 0.78331 0.93561 0.86728 0.85865 0.85632 0.74714 0.86162 0.85372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 0.36 8.82 59.85 0.53 0.89 16 2 N -0.61 -5.47 2.87 -181.57 -0.52 -5.99 16 3 C 0.12 1.35 5.41 -4.05 -0.02 1.33 16 4 C -0.14 -2.15 5.65 -26.73 -0.15 -2.30 16 5 C 0.16 3.08 6.26 -4.04 -0.03 3.06 16 6 N -0.73 -18.84 5.60 -59.91 -0.34 -19.18 16 7 C -0.24 -6.76 9.99 -15.06 -0.15 -6.91 16 8 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 9 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 10 N -0.93 -28.51 13.06 55.49 0.72 -27.79 16 11 Si 0.91 22.51 29.55 -169.99 -5.02 17.48 16 12 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 13 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 14 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 15 C 0.52 5.03 7.08 -10.99 -0.08 4.95 16 16 O -0.52 -7.22 15.53 5.56 0.09 -7.14 16 17 C -0.11 -0.68 1.82 -91.52 -0.17 -0.84 16 18 C -0.12 -0.83 4.70 -27.81 -0.13 -0.96 16 19 C 0.53 4.00 7.75 -11.32 -0.09 3.92 16 20 O -0.50 -5.62 17.88 5.60 0.10 -5.52 16 21 N -0.68 -4.20 5.09 -11.75 -0.06 -4.26 16 22 C 0.53 3.40 7.74 -11.32 -0.09 3.31 16 23 O -0.50 -4.83 17.88 5.59 0.10 -4.73 16 24 C -0.15 -0.65 4.98 -27.81 -0.14 -0.79 16 25 H 0.06 0.22 7.07 -51.92 -0.37 -0.14 16 26 H 0.08 0.46 8.07 -51.92 -0.42 0.05 16 27 H 0.07 0.27 5.98 -51.93 -0.31 -0.04 16 28 H 0.08 0.76 8.07 -51.93 -0.42 0.34 16 29 H 0.09 1.10 7.42 -51.93 -0.39 0.72 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 32 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 33 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 34 H 0.38 10.35 7.67 -40.82 -0.31 10.03 16 35 H 0.25 7.48 8.31 -40.82 -0.34 7.14 16 36 H 0.11 0.53 7.39 -51.93 -0.38 0.15 16 37 H 0.12 0.77 7.99 -51.93 -0.41 0.35 16 38 H 0.13 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.41 2.31 8.79 -40.82 -0.36 1.95 16 40 H 0.12 0.43 8.14 -51.93 -0.42 0.00 16 41 H 0.13 0.43 4.80 -51.93 -0.25 0.18 16 LS Contribution 342.71 15.07 5.16 5.16 Total: -1.00 -36.79 342.71 -6.07 -42.86 By element: Atomic # 1 Polarization: 9.70 SS G_CDS: -5.70 Total: 3.99 kcal Atomic # 6 Polarization: 5.70 SS G_CDS: -0.61 Total: 5.09 kcal Atomic # 7 Polarization: -57.02 SS G_CDS: -0.19 Total: -57.21 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: 0.29 Total: -17.39 kcal Atomic # 14 Polarization: 22.51 SS G_CDS: -5.02 Total: 17.48 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.79 -6.07 -42.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699541965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.009 kcal (2) G-P(sol) polarization free energy of solvation -36.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -89.798 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.073 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds