Wall clock time and date at job start Tue Mar 31 2020 04:20:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46494 * 119.99926 * 2 1 4 4 C 1.52997 * 109.47247 * 270.00281 * 3 2 1 5 5 C 1.53002 * 109.47223 * 180.02562 * 4 3 2 6 6 N 1.46494 * 109.47512 * 179.97438 * 5 4 3 7 7 C 1.36935 * 120.00645 * 179.97438 * 6 5 4 8 8 H 1.08006 * 119.99272 * 0.02562 * 7 6 5 9 9 C 1.38808 * 120.00521 * 179.97438 * 7 6 5 10 10 N 1.31614 * 119.99921 * 0.02562 * 9 7 6 11 11 Si 1.86797 * 120.00073 * 179.97438 * 9 7 6 12 12 H 1.48499 * 109.47338 * 0.02562 * 11 9 7 13 13 H 1.48504 * 109.47271 * 120.00100 * 11 9 7 14 14 H 1.48503 * 109.47638 * 240.00049 * 11 9 7 15 15 C 1.34777 * 119.99557 * 180.02562 * 2 1 3 16 16 O 1.21281 * 119.99360 * 179.97438 * 15 2 1 17 17 C 1.50696 * 120.00370 * 0.02562 * 15 2 1 18 18 C 1.53238 * 109.62061 * 180.02562 * 17 15 2 19 19 C 1.50587 * 109.16297 * 175.52259 * 18 17 15 20 20 O 1.21226 * 119.36503 * 150.90519 * 19 18 17 21 21 N 1.34148 * 121.27859 * 330.92025 * 19 18 17 22 22 C 1.34138 * 122.58329 * 0.81242 * 21 19 18 23 23 O 1.21237 * 119.35601 * 179.17315 * 22 21 19 24 24 C 1.50591 * 121.27961 * 358.90555 * 22 21 19 25 25 H 1.09007 * 109.47199 * 269.99790 * 1 2 3 26 26 H 1.09007 * 109.47391 * 29.99628 * 1 2 3 27 27 H 1.09001 * 109.47518 * 149.99959 * 1 2 3 28 28 H 1.09001 * 109.47439 * 30.00490 * 3 2 1 29 29 H 1.09002 * 109.47313 * 149.99914 * 3 2 1 30 30 H 1.08998 * 109.47353 * 299.99999 * 4 3 2 31 31 H 1.08999 * 109.47538 * 60.00053 * 4 3 2 32 32 H 1.09001 * 109.47300 * 300.00109 * 5 4 3 33 33 H 1.09002 * 109.47476 * 59.99547 * 5 4 3 34 34 H 0.97001 * 119.99976 * 0.02562 * 6 5 4 35 35 H 0.97007 * 120.00172 * 179.97438 * 10 9 7 36 36 H 1.08995 * 109.62329 * 59.63146 * 17 15 2 37 37 H 1.08999 * 109.52392 * 55.61484 * 18 17 15 38 38 H 1.09002 * 109.52105 * 295.42629 * 18 17 15 39 39 H 0.97001 * 118.70406 * 180.51978 * 21 19 18 40 40 H 1.09000 * 109.74987 * 269.60501 * 24 22 21 41 41 H 1.09003 * 109.40216 * 149.35211 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4524 1.7104 -1.4425 5 6 3.2180 3.0351 -1.4425 6 7 3.4626 3.4578 -2.8236 7 6 4.1359 4.6237 -3.0739 8 1 4.4868 5.2314 -2.2529 9 6 4.3681 5.0239 -4.3825 10 7 3.9409 4.2831 -5.3829 11 14 5.2859 6.6147 -4.7238 12 1 5.6562 7.2583 -3.4377 13 1 6.5162 6.3195 -5.5013 14 1 4.4155 7.5310 -5.5037 15 6 2.1388 -1.1673 -0.0005 16 8 3.3516 -1.1672 -0.0010 17 6 1.3853 -2.4723 -0.0017 18 6 2.3781 -3.6397 -0.0014 19 6 1.6179 -4.9349 0.1084 20 8 2.0828 -5.9406 -0.3836 21 7 0.4361 -4.9976 0.7401 22 6 -0.1452 -3.9226 1.2932 23 8 -1.2220 -4.0431 1.8371 24 6 0.5165 -2.5704 1.2569 25 1 -0.3634 0.0000 1.0277 26 1 -0.3634 0.8901 -0.5138 27 1 -0.3634 -0.8900 -0.5138 28 1 1.6085 2.0283 0.5139 29 1 3.1499 1.1384 0.5138 30 1 3.0415 0.9508 -1.9564 31 1 1.5000 1.8408 -1.9563 32 1 2.6293 3.7950 -0.9284 33 1 4.1704 2.9044 -0.9287 34 1 3.1471 2.9122 -3.5609 35 1 4.1029 4.5629 -6.2975 36 1 0.7531 -2.5292 -0.8878 37 1 3.0554 -3.5417 0.8469 38 1 2.9508 -3.6309 -0.9288 39 1 -0.0179 -5.8530 0.7953 40 1 1.1406 -2.4418 2.1413 41 1 -0.2479 -1.7937 1.2333 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699541965.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:20:40 Heat of formation + Delta-G solvation = -124.804051 kcal Electronic energy + Delta-G solvation = -23759.655779 eV Core-core repulsion = 20059.780035 eV Total energy + Delta-G solvation = -3699.875744 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.152 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.71458 -40.94887 -39.98163 -37.60023 -36.63679 -36.41417 -35.02281 -33.87507 -31.55893 -29.90561 -27.91863 -27.48880 -25.73874 -24.30940 -24.04469 -22.45427 -20.44443 -20.23336 -19.14856 -18.86969 -18.64219 -18.04880 -17.26695 -16.88658 -16.58576 -16.42124 -15.93966 -15.76592 -15.51262 -15.44583 -15.29810 -15.12842 -14.88538 -14.30284 -13.88990 -13.55615 -13.46380 -13.36250 -13.00289 -12.77861 -12.71741 -12.39208 -12.33450 -12.24369 -12.02304 -11.96643 -11.80822 -11.75067 -11.41309 -11.38931 -10.95064 -10.78055 -9.66101 -9.01691 -7.96402 -5.25850 0.38031 1.47367 1.48788 1.50418 1.58916 1.62928 1.69080 2.01084 2.56097 2.85901 3.18375 3.34858 3.37651 3.53945 3.88617 3.89730 3.93259 4.14320 4.27767 4.34844 4.39279 4.50275 4.55917 4.65351 4.70110 4.75801 4.80156 4.84459 4.93870 4.97147 5.06472 5.32314 5.34519 5.49214 5.54411 5.72901 6.26067 6.26341 6.37736 6.72783 7.11137 7.31922 8.08174 8.30409 9.27634 Molecular weight = 297.15amu Principal moments of inertia in cm(-1) A = 0.030144 B = 0.002537 C = 0.002434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 928.652466 B =11032.207817 C =11498.667306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.056 3.944 2 N -0.607 5.607 3 C 0.127 3.873 4 C -0.123 4.123 5 C 0.153 3.847 6 N -0.750 5.750 7 C -0.246 4.246 8 H 0.078 0.922 9 C -0.079 4.079 10 N -0.971 5.971 11 Si 0.976 3.024 12 H -0.264 1.264 13 H -0.294 1.294 14 H -0.291 1.291 15 C 0.518 3.482 16 O -0.571 6.571 17 C -0.101 4.101 18 C -0.121 4.121 19 C 0.542 3.458 20 O -0.536 6.536 21 N -0.671 5.671 22 C 0.542 3.458 23 O -0.528 6.528 24 C -0.137 4.137 25 H 0.091 0.909 26 H 0.081 0.919 27 H 0.091 0.909 28 H 0.108 0.892 29 H 0.072 0.928 30 H 0.039 0.961 31 H 0.067 0.933 32 H 0.033 0.967 33 H 0.014 0.986 34 H 0.372 0.628 35 H 0.251 0.749 36 H 0.134 0.866 37 H 0.129 0.871 38 H 0.114 0.886 39 H 0.416 0.584 40 H 0.136 0.864 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.166 -15.763 17.182 26.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 N -0.339 5.339 3 C 0.003 3.997 4 C -0.162 4.162 5 C 0.026 3.974 6 N -0.393 5.393 7 C -0.378 4.378 8 H 0.095 0.905 9 C -0.271 4.271 10 N -0.622 5.622 11 Si 0.805 3.195 12 H -0.189 1.189 13 H -0.222 1.222 14 H -0.218 1.218 15 C 0.306 3.694 16 O -0.450 6.450 17 C -0.122 4.122 18 C -0.161 4.161 19 C 0.332 3.668 20 O -0.410 6.410 21 N -0.335 5.335 22 C 0.332 3.668 23 O -0.402 6.402 24 C -0.176 4.176 25 H 0.109 0.891 26 H 0.100 0.900 27 H 0.110 0.890 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.058 0.942 31 H 0.086 0.914 32 H 0.051 0.949 33 H 0.032 0.968 34 H 0.204 0.796 35 H 0.060 0.940 36 H 0.152 0.848 37 H 0.147 0.853 38 H 0.132 0.868 39 H 0.256 0.744 40 H 0.154 0.846 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -11.677 -15.968 17.291 26.274 hybrid contribution 0.419 0.142 -1.025 1.116 sum -11.258 -15.826 16.266 25.334 Atomic orbital electron populations 1.22396 0.76919 1.05075 1.04122 1.47921 1.08580 1.05212 1.72164 1.21335 0.98085 0.85060 0.95174 1.21879 1.00058 0.96006 0.98298 1.20730 0.96528 0.94299 0.85818 1.42631 1.68138 1.25382 1.03131 1.19710 1.27099 0.98834 0.92128 0.90450 1.25626 1.03301 1.02638 0.95519 1.69829 1.53333 1.40783 0.98286 0.85034 0.77471 0.79080 0.77937 1.18855 1.22156 1.21763 1.20545 0.87394 0.85691 0.75738 1.90770 1.15631 1.87653 1.50910 1.21419 0.97366 0.91500 1.01927 1.21748 0.98009 0.87802 1.08494 1.20997 0.79805 0.91427 0.74576 1.90813 1.66912 1.38233 1.45090 1.44862 1.21789 1.14529 1.52337 1.20998 0.84202 0.86679 0.74913 1.90828 1.21634 1.86080 1.41680 1.22284 1.01869 0.93857 0.99606 0.89072 0.89986 0.89021 0.87399 0.90970 0.94193 0.91428 0.94899 0.96767 0.79643 0.93971 0.84841 0.85302 0.86765 0.74370 0.84620 0.83386 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.06 0.38 8.82 127.77 1.13 1.51 16 2 N -0.61 -9.39 2.87 -846.75 -2.43 -11.83 16 3 C 0.13 2.67 5.41 86.38 0.47 3.14 16 4 C -0.12 -3.72 5.65 30.59 0.17 -3.55 16 5 C 0.15 5.96 6.26 86.38 0.54 6.50 16 6 N -0.75 -38.81 5.60 -343.46 -1.92 -40.73 16 7 C -0.25 -13.91 9.99 84.03 0.84 -13.07 16 8 H 0.08 4.18 7.83 -2.91 -0.02 4.16 16 9 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 10 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 11 Si 0.98 46.31 29.55 68.60 2.03 48.34 16 12 H -0.26 -11.70 7.11 99.48 0.71 -11.00 16 13 H -0.29 -14.01 7.11 99.48 0.71 -13.30 16 14 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 15 C 0.52 9.16 7.08 87.66 0.62 9.78 16 16 O -0.57 -15.69 15.53 -3.03 -0.05 -15.73 16 17 C -0.10 -0.96 1.82 -11.38 -0.02 -0.98 16 18 C -0.12 -1.50 4.70 29.89 0.14 -1.36 16 19 C 0.54 7.74 7.75 87.72 0.68 8.42 16 20 O -0.54 -12.13 17.88 -2.86 -0.05 -12.18 16 21 N -0.67 -7.30 5.09 -428.61 -2.18 -9.49 16 22 C 0.54 5.61 7.74 87.72 0.68 6.29 16 23 O -0.53 -9.03 17.88 -2.90 -0.05 -9.08 16 24 C -0.14 -0.77 4.98 29.90 0.15 -0.62 16 25 H 0.09 0.18 7.07 -2.38 -0.02 0.17 16 26 H 0.08 0.63 8.07 -2.38 -0.02 0.61 16 27 H 0.09 0.30 5.98 -2.39 -0.01 0.28 16 28 H 0.11 1.70 8.07 -2.39 -0.02 1.68 16 29 H 0.07 1.77 7.42 -2.39 -0.02 1.75 16 30 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 32 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 33 H 0.01 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.37 20.53 7.67 -92.71 -0.71 19.81 16 35 H 0.25 15.01 8.31 -92.70 -0.77 14.24 16 36 H 0.13 0.83 7.39 -2.39 -0.02 0.81 16 37 H 0.13 1.50 7.99 -2.39 -0.02 1.48 16 38 H 0.11 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.42 4.21 8.79 -92.71 -0.81 3.39 16 40 H 0.14 0.47 8.14 -2.39 -0.02 0.45 16 41 H 0.15 0.32 4.80 -2.39 -0.01 0.31 16 Total: -1.00 -80.97 342.71 1.03 -79.94 By element: Atomic # 1 Polarization: 19.16 SS G_CDS: -0.45 Total: 18.70 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 5.86 Total: 11.94 kcal Atomic # 7 Polarization: -115.67 SS G_CDS: -6.26 Total: -121.93 kcal Atomic # 8 Polarization: -36.84 SS G_CDS: -0.15 Total: -36.99 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -80.97 1.03 -79.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699541965.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.867 kcal (2) G-P(sol) polarization free energy of solvation -80.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.031 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.804 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds