Wall clock time and date at job start Tue Mar 31 2020 05:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31622 * 1 3 3 Si 1.86800 * 120.00455 * 2 1 4 4 H 1.48506 * 109.46719 * 270.00189 * 3 2 1 5 5 H 1.48501 * 109.46793 * 29.99844 * 3 2 1 6 6 H 1.48489 * 109.47333 * 150.00088 * 3 2 1 7 7 C 1.38811 * 119.99400 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00530 * 0.02562 * 7 2 1 9 9 N 1.36943 * 119.99622 * 179.72313 * 7 2 1 10 10 C 1.46504 * 119.99781 * 180.27904 * 9 7 2 11 11 C 1.52996 * 109.46681 * 180.02562 * 10 9 7 12 12 H 1.08994 * 109.50117 * 54.93356 * 11 10 9 13 13 C 1.53039 * 109.49990 * 294.83199 * 11 10 9 14 14 C 1.53037 * 109.54095 * 178.68556 * 13 11 10 15 15 C 1.53195 * 109.31112 * 61.36908 * 14 13 11 16 16 N 1.46925 * 108.77414 * 305.36363 * 15 14 13 17 17 C 1.34776 * 120.63017 * 233.63089 * 16 15 14 18 18 O 1.21280 * 119.99735 * 179.97438 * 17 16 15 19 19 C 1.50698 * 120.00231 * 359.97438 * 17 16 15 20 20 C 1.52995 * 109.47310 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47120 * 180.02562 * 20 19 17 22 22 C 1.50698 * 109.47277 * 180.02562 * 21 20 19 23 23 N 1.34778 * 120.00205 * 180.02562 * 22 21 20 24 24 O 1.21279 * 119.99986 * 0.02562 * 22 21 20 25 25 C 1.46925 * 118.73947 * 53.61274 * 16 15 14 26 26 H 0.97009 * 119.99492 * 0.02562 * 1 2 3 27 27 H 0.97000 * 119.99808 * 0.27579 * 9 7 2 28 28 H 1.09006 * 109.46810 * 299.99903 * 10 9 7 29 29 H 1.08997 * 109.47198 * 60.00005 * 10 9 7 30 30 H 1.09000 * 109.46313 * 298.71429 * 13 11 10 31 31 H 1.08999 * 109.45485 * 58.66524 * 13 11 10 32 32 H 1.08996 * 109.50017 * 301.41595 * 14 13 11 33 33 H 1.09002 * 109.52437 * 181.33574 * 14 13 11 34 34 H 1.08998 * 109.58425 * 185.57588 * 15 14 13 35 35 H 1.08996 * 109.70585 * 65.22273 * 15 14 13 36 36 H 1.08999 * 109.47425 * 300.00336 * 19 17 16 37 37 H 1.09010 * 109.46670 * 60.00299 * 19 17 16 38 38 H 1.08994 * 109.47859 * 300.00545 * 20 19 17 39 39 H 1.09000 * 109.46872 * 60.00834 * 20 19 17 40 40 H 1.08999 * 109.47442 * 300.00557 * 21 20 19 41 41 H 1.08997 * 109.47129 * 60.00644 * 21 20 19 42 42 H 0.97004 * 120.00123 * 359.97438 * 23 22 21 43 43 H 0.97002 * 120.00097 * 179.97438 * 23 22 21 44 44 H 1.09002 * 109.58728 * 186.60350 * 25 16 15 45 45 H 1.08995 * 109.59198 * 66.17205 * 25 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2504 1.6177 0.0000 4 1 2.4978 2.0463 -1.4002 5 1 1.4478 2.6526 0.7000 6 1 3.5478 1.4401 0.7000 7 6 2.0102 -1.2022 0.0005 8 1 1.4701 -2.1375 0.0005 9 7 3.3796 -1.2023 -0.0052 10 6 4.1120 -2.4711 -0.0108 11 6 5.6162 -2.1915 -0.0159 12 1 5.8692 -1.5466 0.8255 13 6 6.0027 -1.4996 -1.3251 14 6 7.5015 -1.1901 -1.3173 15 6 8.2888 -2.5000 -1.2120 16 7 7.8194 -3.2404 -0.0329 17 6 8.6906 -3.6612 0.9053 18 8 8.2906 -4.2710 1.8743 19 6 10.1619 -3.3740 0.7504 20 6 10.9233 -3.9551 1.9434 21 6 12.4169 -3.6630 1.7864 22 6 13.1671 -4.2359 2.9612 23 7 14.5056 -4.0984 3.0380 24 8 12.5663 -4.8207 3.8375 25 6 6.3822 -3.5129 0.1041 26 1 -0.4850 0.8402 -0.0004 27 1 3.8646 -0.3622 -0.0056 28 1 3.8523 -3.0444 0.8792 29 1 3.8449 -3.0408 -0.9008 30 1 5.7717 -2.1555 -2.1645 31 1 5.4407 -0.5711 -1.4247 32 1 7.7372 -0.5543 -0.4639 33 1 7.7721 -0.6761 -2.2396 34 1 9.3512 -2.2802 -1.1065 35 1 8.1269 -3.0991 -2.1080 36 1 10.5261 -3.8297 -0.1704 37 1 10.3193 -2.2962 0.7094 38 1 10.5592 -3.4992 2.8640 39 1 10.7660 -5.0329 1.9848 40 1 12.7815 -4.1186 0.8658 41 1 12.5740 -2.5852 1.7453 42 1 14.9862 -3.6309 2.3370 43 1 14.9884 -4.4668 3.7944 44 1 6.1865 -3.9614 1.0781 45 1 6.0624 -4.1935 -0.6848 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001752814339.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:14:50 Heat of formation + Delta-G solvation = -82.821597 kcal Electronic energy + Delta-G solvation = -23925.574741 eV Core-core repulsion = 20363.352588 eV Total energy + Delta-G solvation = -3562.222154 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -40.38457 -39.76764 -37.82265 -35.13318 -34.56718 -34.03514 -32.79461 -31.78628 -30.54712 -28.93845 -25.82892 -25.44945 -23.14759 -22.47825 -21.66262 -20.67054 -20.07974 -18.96626 -17.89077 -17.57757 -17.00880 -16.93135 -16.44550 -15.85013 -15.39947 -14.79467 -14.47659 -14.26351 -14.24784 -14.07767 -13.79038 -13.57520 -13.06159 -12.80869 -12.76006 -12.42012 -12.34074 -12.12268 -12.05277 -11.69518 -11.16277 -11.13038 -11.07739 -10.89666 -10.71144 -10.46595 -10.36721 -10.32226 -10.11104 -10.05745 -9.75021 -9.56497 -8.88539 -8.64370 -7.20909 -5.75109 -3.10277 2.27109 2.57912 2.85211 3.16911 3.37084 3.39463 3.45133 4.25018 4.39619 4.59978 4.61790 4.65067 4.65900 4.86374 4.92181 4.98544 5.03223 5.07968 5.18365 5.20675 5.27269 5.42124 5.52219 5.55204 5.69907 5.75552 5.82244 5.85893 5.90008 6.00187 6.07400 6.10983 6.33964 6.34950 6.43816 6.49542 6.70916 6.79654 6.88567 7.35253 7.87343 8.01583 8.13865 8.44048 9.23069 9.95370 10.15472 11.43431 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.027805 B = 0.002530 C = 0.002517 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.781799 B =11065.842070 C =11123.132855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.003 3.997 3 Si 0.884 3.116 4 H -0.284 1.284 5 H -0.291 1.291 6 H -0.278 1.278 7 C -0.242 4.242 8 H 0.090 0.910 9 N -0.754 5.754 10 C 0.164 3.836 11 C -0.111 4.111 12 H 0.073 0.927 13 C -0.113 4.113 14 C -0.137 4.137 15 C 0.108 3.892 16 N -0.612 5.612 17 C 0.511 3.489 18 O -0.537 6.537 19 C -0.139 4.139 20 C -0.092 4.092 21 C -0.142 4.142 22 C 0.513 3.487 23 N -0.861 5.861 24 O -0.536 6.536 25 C 0.119 3.881 26 H 0.259 0.741 27 H 0.360 0.640 28 H 0.029 0.971 29 H 0.029 0.971 30 H 0.065 0.935 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.074 0.926 34 H 0.081 0.919 35 H 0.070 0.930 36 H 0.092 0.908 37 H 0.093 0.907 38 H 0.079 0.921 39 H 0.078 0.922 40 H 0.095 0.905 41 H 0.095 0.905 42 H 0.401 0.599 43 H 0.400 0.600 44 H 0.093 0.907 45 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.063 -5.005 -3.730 32.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.193 4.193 3 Si 0.714 3.286 4 H -0.211 1.211 5 H -0.217 1.217 6 H -0.204 1.204 7 C -0.372 4.372 8 H 0.108 0.892 9 N -0.400 5.400 10 C 0.036 3.964 11 C -0.130 4.130 12 H 0.091 0.909 13 C -0.151 4.151 14 C -0.175 4.175 15 C -0.015 4.015 16 N -0.345 5.345 17 C 0.299 3.701 18 O -0.414 6.414 19 C -0.179 4.179 20 C -0.130 4.130 21 C -0.182 4.182 22 C 0.298 3.702 23 N -0.425 5.425 24 O -0.412 6.412 25 C -0.004 4.004 26 H 0.069 0.931 27 H 0.193 0.807 28 H 0.047 0.953 29 H 0.047 0.953 30 H 0.084 0.916 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.092 0.908 34 H 0.100 0.900 35 H 0.088 0.912 36 H 0.111 0.889 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.097 0.903 40 H 0.113 0.887 41 H 0.113 0.887 42 H 0.229 0.771 43 H 0.230 0.770 44 H 0.112 0.888 45 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 31.038 -5.775 -2.737 31.689 hybrid contribution 1.010 1.518 -0.204 1.834 sum 32.048 -4.257 -2.941 32.463 Atomic orbital electron populations 1.69708 1.05068 1.25748 1.57742 1.24677 0.95253 0.97172 1.02200 0.86546 0.79246 0.85070 0.77690 1.21096 1.21724 1.20399 1.19076 0.80637 0.94759 1.42716 0.89187 1.42696 1.03991 1.02145 1.91161 1.20569 0.87560 0.89432 0.98835 1.21724 0.96577 0.96395 0.98343 0.90905 1.21550 0.94329 1.01668 0.97562 1.21958 0.96539 0.96598 1.02405 1.21766 0.98623 0.93086 0.88058 1.48162 1.07804 1.55990 1.22588 1.20626 0.88429 0.78907 0.82112 1.90732 1.79744 1.40695 1.30198 1.21702 0.92311 1.03073 1.00833 1.21100 0.90837 1.03086 0.97985 1.21698 0.96817 1.02626 0.97071 1.20773 0.82440 0.79095 0.87865 1.43941 1.08377 1.61567 1.28600 1.90801 1.67896 1.41757 1.40754 1.21616 0.78282 0.96915 1.03565 0.93096 0.80681 0.95305 0.95273 0.91586 0.90998 0.91608 0.90770 0.90023 0.91207 0.88925 0.88868 0.90253 0.90286 0.88692 0.88660 0.77137 0.76950 0.88824 0.91300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -29.70 13.97 55.49 0.78 -28.93 16 2 C 0.00 0.08 5.50 -17.43 -0.10 -0.02 16 3 Si 0.88 22.26 27.73 -169.99 -4.71 17.54 16 4 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 6 H -0.28 -6.61 6.52 56.52 0.37 -6.24 16 7 C -0.24 -6.95 10.47 -15.06 -0.16 -7.11 16 8 H 0.09 2.77 8.06 -52.49 -0.42 2.35 16 9 N -0.75 -18.06 5.12 -59.91 -0.31 -18.36 16 10 C 0.16 3.18 5.65 -4.04 -0.02 3.15 16 11 C -0.11 -1.70 2.37 -90.50 -0.21 -1.91 16 12 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 13 C -0.11 -1.51 5.06 -26.69 -0.13 -1.65 16 14 C -0.14 -1.33 6.08 -26.61 -0.16 -1.49 16 15 C 0.11 0.89 6.34 -3.71 -0.02 0.87 16 16 N -0.61 -7.11 2.97 -172.77 -0.51 -7.62 16 17 C 0.51 6.38 7.70 -10.99 -0.08 6.30 16 18 O -0.54 -9.16 15.39 5.56 0.09 -9.08 16 19 C -0.14 -1.06 4.05 -27.89 -0.11 -1.17 16 20 C -0.09 -0.83 3.79 -26.73 -0.10 -0.94 16 21 C -0.14 -0.75 5.70 -27.89 -0.16 -0.91 16 22 C 0.51 4.12 8.10 -10.99 -0.09 4.04 16 23 N -0.86 -3.38 8.87 31.22 0.28 -3.10 16 24 O -0.54 -7.28 16.82 5.56 0.09 -7.19 16 25 C 0.12 1.63 5.72 -3.71 -0.02 1.61 16 26 H 0.26 7.82 8.31 -40.82 -0.34 7.48 16 27 H 0.36 8.38 4.72 -40.82 -0.19 8.19 16 28 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 29 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.07 1.11 7.16 -51.93 -0.37 0.74 16 32 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.08 0.44 5.93 -51.93 -0.31 0.14 16 35 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 36 H 0.09 0.47 7.94 -51.93 -0.41 0.06 16 37 H 0.09 0.53 7.69 -51.92 -0.40 0.13 16 38 H 0.08 0.93 8.06 -51.93 -0.42 0.51 16 39 H 0.08 0.90 8.06 -51.93 -0.42 0.48 16 40 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 41 H 0.10 0.30 8.14 -51.93 -0.42 -0.13 16 42 H 0.40 0.21 8.83 -40.82 -0.36 -0.15 16 43 H 0.40 1.43 8.93 -40.82 -0.36 1.07 16 44 H 0.09 1.46 7.00 -51.93 -0.36 1.10 16 45 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 LS Contribution 360.27 15.07 5.43 5.43 Total: -1.00 -38.45 360.27 -7.68 -46.13 By element: Atomic # 1 Polarization: 11.84 SS G_CDS: -7.43 Total: 4.42 kcal Atomic # 6 Polarization: 2.14 SS G_CDS: -1.38 Total: 0.76 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.23 Total: -58.01 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: 0.18 Total: -16.26 kcal Atomic # 14 Polarization: 22.26 SS G_CDS: -4.71 Total: 17.54 kcal Total LS contribution 5.43 Total: 5.43 kcal Total: -38.45 -7.68 -46.13 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001752814339.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.692 kcal (2) G-P(sol) polarization free energy of solvation -38.448 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.139 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.130 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds