Wall clock time and date at job start Tue Mar 31 2020 04:31:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36591 * 126.57747 * 2 1 4 4 C 1.47521 * 125.77519 * 0.04402 * 3 2 1 5 5 O 1.21599 * 119.99583 * 355.02497 * 4 3 2 6 6 N 1.34779 * 120.00642 * 175.02481 * 4 3 2 7 7 C 1.46503 * 119.99552 * 2.53612 * 6 4 3 8 8 C 1.46498 * 120.00214 * 182.53375 * 6 4 3 9 9 C 1.53006 * 109.46860 * 90.00276 * 8 6 4 10 10 H 1.08991 * 109.47199 * 60.00133 * 9 8 6 11 11 O 1.42899 * 109.46663 * 299.99809 * 9 8 6 12 12 C 1.53006 * 109.46652 * 180.02562 * 9 8 6 13 13 N 1.46497 * 109.46623 * 184.99956 * 12 9 8 14 14 C 1.36942 * 120.00072 * 180.02562 * 13 12 9 15 15 H 1.08007 * 119.99587 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00224 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00131 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99912 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47217 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46721 * 119.99829 * 18 16 14 21 21 H 1.48498 * 109.47465 * 239.99730 * 18 16 14 22 22 N 1.34404 * 108.45705 * 180.02562 * 3 2 1 23 23 N 1.28761 * 109.52173 * 359.75157 * 22 3 2 24 24 N 1.34816 * 126.58160 * 180.02562 * 2 1 3 25 25 C 1.46495 * 126.59169 * 359.92734 * 24 2 1 26 26 H 1.08997 * 109.46655 * 269.97443 * 1 2 3 27 27 H 1.08999 * 109.47166 * 29.97647 * 1 2 3 28 28 H 1.08998 * 109.46902 * 149.97615 * 1 2 3 29 29 H 1.08995 * 109.47495 * 83.83903 * 7 6 4 30 30 H 1.09005 * 109.46959 * 203.84300 * 7 6 4 31 31 H 1.09001 * 109.47167 * 323.83707 * 7 6 4 32 32 H 1.08998 * 109.47039 * 210.00193 * 8 6 4 33 33 H 1.08991 * 109.47106 * 330.00352 * 8 6 4 34 34 H 0.96702 * 114.00092 * 299.99185 * 11 9 8 35 35 H 1.09002 * 109.46853 * 304.99476 * 12 9 8 36 36 H 1.08994 * 109.47122 * 65.00074 * 12 9 8 37 37 H 0.97002 * 120.00071 * 359.97438 * 13 12 9 38 38 H 0.97004 * 120.00145 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47287 * 89.99800 * 25 24 2 40 40 H 1.09000 * 109.47290 * 209.99861 * 25 24 2 41 41 H 1.08997 * 109.47324 * 329.99976 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6897 2.7640 -0.0896 6 7 2.7775 3.4974 0.1020 7 6 4.2079 3.1849 0.1551 8 6 2.3296 4.8911 0.1589 9 6 2.1026 5.2947 1.6172 10 1 3.0345 5.1897 2.1725 11 8 1.1056 4.4499 2.1954 12 6 1.6342 6.7501 1.6764 13 7 1.5315 7.1734 3.0752 14 6 1.1273 8.4464 3.3774 15 1 0.8846 9.1384 2.5845 16 6 1.0295 8.8473 4.7027 17 7 1.3247 8.0037 5.6690 18 14 0.4788 10.5840 5.1149 19 1 0.2079 11.3286 3.8590 20 1 -0.7586 10.5295 5.9342 21 1 1.5486 11.2743 5.8793 22 7 3.5984 0.6789 -0.0006 23 7 3.6299 -0.6083 0.0043 24 7 2.3105 -1.0826 -0.0005 25 6 1.8864 -2.4848 0.0004 26 1 -0.3632 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.5898 3.0576 -0.8578 30 1 4.7401 4.0007 0.6443 31 1 4.3579 2.2639 0.7184 32 1 3.0901 5.5354 -0.2823 33 1 1.3977 4.9961 -0.3965 34 1 0.2479 4.4925 1.7508 35 1 2.3523 7.3843 1.1567 36 1 0.6589 6.8376 1.1978 37 1 1.7491 6.5516 3.7873 38 1 1.2567 8.2840 6.5951 39 1 1.7802 -2.8329 -1.0270 40 1 2.6337 -3.0901 0.5136 41 1 0.9299 -2.5748 0.5152 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755775459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:58 Heat of formation + Delta-G solvation = 37.561334 kcal Electronic energy + Delta-G solvation = -24248.815905 eV Core-core repulsion = 20588.273604 eV Total energy + Delta-G solvation = -3660.542301 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.48074 -39.61366 -37.18011 -35.56868 -34.79046 -33.92133 -32.54369 -31.24938 -29.69926 -28.18665 -27.79225 -26.72749 -25.39417 -23.39372 -22.41288 -21.31290 -20.99782 -19.69078 -17.64865 -17.09598 -16.73047 -16.46162 -16.10527 -15.73565 -15.06835 -14.90998 -14.39106 -14.31134 -14.04587 -13.84604 -13.50051 -13.42999 -13.28724 -12.98045 -12.85240 -12.81435 -12.58617 -12.39619 -12.03999 -11.86296 -11.41324 -10.97810 -10.88881 -10.79087 -10.58482 -10.41867 -10.08005 -9.98322 -9.71629 -9.50519 -9.31126 -8.84588 -8.37670 -6.85827 -5.69612 -2.98734 0.90834 1.59918 1.77452 2.97430 3.31643 3.47193 3.52195 3.54915 3.98765 4.03153 4.32927 4.47691 4.54211 4.62996 4.80993 4.91063 5.02150 5.12377 5.19851 5.29149 5.35800 5.40309 5.45625 5.59915 5.64189 5.70850 5.77920 5.85243 6.08946 6.11970 6.16081 6.32178 6.57572 6.61703 6.82503 7.37973 7.74259 7.74683 8.20034 8.28246 8.48795 9.59936 10.18755 10.54346 11.52933 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.030908 B = 0.002904 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.702240 B = 9640.764694 C = 9867.338629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C 0.124 3.876 3 C -0.098 4.098 4 C 0.610 3.390 5 O -0.536 6.536 6 N -0.593 5.593 7 C 0.073 3.927 8 C 0.085 3.915 9 C 0.086 3.914 10 H 0.096 0.904 11 O -0.548 6.548 12 C 0.127 3.873 13 N -0.726 5.726 14 C -0.240 4.240 15 H 0.070 0.930 16 C -0.015 4.015 17 N -0.930 5.930 18 Si 0.907 3.093 19 H -0.281 1.281 20 H -0.292 1.292 21 H -0.292 1.292 22 N -0.201 5.201 23 N -0.076 5.076 24 N -0.366 5.366 25 C 0.087 3.913 26 H 0.093 0.907 27 H 0.115 0.885 28 H 0.073 0.927 29 H 0.055 0.945 30 H 0.069 0.931 31 H 0.095 0.905 32 H 0.088 0.912 33 H 0.089 0.911 34 H 0.373 0.627 35 H 0.025 0.975 36 H 0.022 0.978 37 H 0.388 0.612 38 H 0.254 0.746 39 H 0.088 0.912 40 H 0.101 0.899 41 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.478 -21.962 -15.617 26.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.013 4.013 3 C -0.237 4.237 4 C 0.396 3.604 5 O -0.413 6.413 6 N -0.324 5.324 7 C -0.070 4.070 8 C -0.038 4.038 9 C 0.025 3.975 10 H 0.114 0.886 11 O -0.353 6.353 12 C -0.002 4.002 13 N -0.371 5.371 14 C -0.371 4.371 15 H 0.088 0.912 16 C -0.211 4.211 17 N -0.579 5.579 18 Si 0.738 3.262 19 H -0.206 1.206 20 H -0.219 1.219 21 H -0.219 1.219 22 N -0.074 5.074 23 N -0.055 5.055 24 N -0.152 5.152 25 C -0.054 4.054 26 H 0.112 0.888 27 H 0.133 0.867 28 H 0.092 0.908 29 H 0.074 0.926 30 H 0.088 0.912 31 H 0.113 0.887 32 H 0.106 0.894 33 H 0.107 0.893 34 H 0.220 0.780 35 H 0.043 0.957 36 H 0.039 0.961 37 H 0.222 0.778 38 H 0.064 0.936 39 H 0.106 0.894 40 H 0.119 0.881 41 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 2.788 -22.240 -15.288 27.131 hybrid contribution -1.406 0.968 0.188 1.718 sum 1.381 -21.272 -15.100 26.123 Atomic orbital electron populations 1.20749 0.84559 1.05429 1.04869 1.21929 0.96287 0.86239 0.96890 1.21202 0.88876 0.95536 1.18110 1.16616 0.85229 0.82286 0.76226 1.90711 1.15919 1.83215 1.51443 1.47439 1.07205 1.06053 1.71684 1.22173 0.79457 1.03117 1.02237 1.22315 1.02029 0.80706 0.98748 1.22500 0.92735 0.90383 0.91841 0.88617 1.86549 1.23350 1.66091 1.59307 1.21241 0.97802 0.91849 0.89340 1.42270 1.81365 1.12851 1.00569 1.19273 1.37195 0.89056 0.91578 0.91212 1.24762 1.02557 0.98078 0.95676 1.69697 1.55076 1.34314 0.98779 0.86114 0.77881 0.84270 0.77905 1.20585 1.21886 1.21897 1.74709 1.18934 1.03626 1.10149 1.81982 0.96111 1.03938 1.23473 1.50244 1.06500 1.07728 1.50729 1.22152 1.02511 0.76142 1.04577 0.88845 0.86677 0.90813 0.92638 0.91197 0.88688 0.89413 0.89254 0.77956 0.95745 0.96054 0.77753 0.93601 0.89356 0.88052 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.75 9.44 36.01 0.34 -0.41 16 2 C 0.12 1.32 7.02 -81.87 -0.57 0.75 16 3 C -0.10 -1.32 6.70 -83.55 -0.56 -1.88 16 4 C 0.61 9.03 7.14 -12.48 -0.09 8.94 16 5 O -0.54 -8.51 13.22 0.01 0.00 -8.51 16 6 N -0.59 -8.23 2.83 -182.81 -0.52 -8.75 16 7 C 0.07 0.87 9.56 59.85 0.57 1.45 16 8 C 0.09 1.18 5.13 -4.04 -0.02 1.16 16 9 C 0.09 1.50 3.27 -26.72 -0.09 1.41 16 10 H 0.10 1.76 8.14 -51.93 -0.42 1.34 16 11 O -0.55 -10.56 12.15 -40.50 -0.49 -11.05 16 12 C 0.13 2.59 5.90 -4.04 -0.02 2.57 16 13 N -0.73 -19.26 5.55 -59.91 -0.33 -19.59 16 14 C -0.24 -6.94 9.99 -15.06 -0.15 -7.09 16 15 H 0.07 1.95 7.83 -52.48 -0.41 1.54 16 16 C -0.01 -0.44 5.50 -17.43 -0.10 -0.53 16 17 N -0.93 -29.20 13.06 55.49 0.72 -28.47 16 18 Si 0.91 22.94 29.55 -169.99 -5.02 17.92 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.29 -7.41 7.11 56.52 0.40 -7.00 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 22 N -0.20 -2.71 8.80 32.85 0.29 -2.42 16 23 N -0.08 -0.94 13.78 60.35 0.83 -0.11 16 24 N -0.37 -3.42 4.03 -63.59 -0.26 -3.67 16 25 C 0.09 0.33 11.18 59.84 0.67 1.00 16 26 H 0.09 0.68 8.14 -51.93 -0.42 0.26 16 27 H 0.11 1.09 6.34 -51.93 -0.33 0.76 16 28 H 0.07 0.33 7.83 -51.93 -0.41 -0.08 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.07 0.75 8.03 -51.93 -0.42 0.33 16 31 H 0.10 1.23 5.33 -51.93 -0.28 0.95 16 32 H 0.09 1.03 8.07 -51.93 -0.42 0.61 16 33 H 0.09 1.25 7.39 -51.93 -0.38 0.87 16 34 H 0.37 6.59 8.53 45.56 0.39 6.98 16 35 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.39 11.12 7.67 -40.82 -0.31 10.80 16 38 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 39 H 0.09 0.19 8.14 -51.93 -0.42 -0.23 16 40 H 0.10 0.29 8.14 -51.93 -0.42 -0.13 16 41 H 0.10 0.16 7.77 -51.93 -0.40 -0.24 16 LS Contribution 345.19 15.07 5.20 5.20 Total: -1.00 -36.51 345.19 -4.66 -41.17 By element: Atomic # 1 Polarization: 15.98 SS G_CDS: -5.06 Total: 10.91 kcal Atomic # 6 Polarization: 7.39 SS G_CDS: -0.02 Total: 7.37 kcal Atomic # 7 Polarization: -63.76 SS G_CDS: 0.74 Total: -63.02 kcal Atomic # 8 Polarization: -19.07 SS G_CDS: -0.49 Total: -19.56 kcal Atomic # 14 Polarization: 22.94 SS G_CDS: -5.02 Total: 17.92 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -36.51 -4.66 -41.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755775459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.732 kcal (2) G-P(sol) polarization free energy of solvation -36.512 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.221 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.659 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.171 kcal (6) G-S(sol) free energy of system = (1) + (5) 37.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds