Wall clock time and date at job start Tue Mar 31 2020 04:31:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.36591 * 126.57747 * 2 1 4 4 C 1.47521 * 125.77519 * 0.04402 * 3 2 1 5 5 O 1.21599 * 119.99583 * 355.02497 * 4 3 2 6 6 N 1.34779 * 120.00642 * 175.02481 * 4 3 2 7 7 C 1.46503 * 119.99552 * 2.53612 * 6 4 3 8 8 C 1.46498 * 120.00214 * 182.53375 * 6 4 3 9 9 C 1.53006 * 109.46860 * 90.00276 * 8 6 4 10 10 H 1.08991 * 109.47199 * 60.00133 * 9 8 6 11 11 O 1.42899 * 109.46663 * 299.99809 * 9 8 6 12 12 C 1.53006 * 109.46652 * 180.02562 * 9 8 6 13 13 N 1.46497 * 109.46623 * 184.99956 * 12 9 8 14 14 C 1.36942 * 120.00072 * 180.02562 * 13 12 9 15 15 H 1.08007 * 119.99587 * 359.97438 * 14 13 12 16 16 C 1.38805 * 120.00224 * 179.97438 * 14 13 12 17 17 N 1.31619 * 120.00131 * 359.97438 * 16 14 13 18 18 Si 1.86801 * 119.99912 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.47217 * 0.02562 * 18 16 14 20 20 H 1.48507 * 109.46721 * 119.99829 * 18 16 14 21 21 H 1.48498 * 109.47465 * 239.99730 * 18 16 14 22 22 N 1.34404 * 108.45705 * 180.02562 * 3 2 1 23 23 N 1.28761 * 109.52173 * 359.75157 * 22 3 2 24 24 N 1.34816 * 126.58160 * 180.02562 * 2 1 3 25 25 C 1.46495 * 126.59169 * 359.92734 * 24 2 1 26 26 H 1.08997 * 109.46655 * 269.97443 * 1 2 3 27 27 H 1.08999 * 109.47166 * 29.97647 * 1 2 3 28 28 H 1.08998 * 109.46902 * 149.97615 * 1 2 3 29 29 H 1.08995 * 109.47495 * 83.83903 * 7 6 4 30 30 H 1.09005 * 109.46959 * 203.84300 * 7 6 4 31 31 H 1.09001 * 109.47167 * 323.83707 * 7 6 4 32 32 H 1.08998 * 109.47039 * 210.00193 * 8 6 4 33 33 H 1.08991 * 109.47106 * 330.00352 * 8 6 4 34 34 H 0.96702 * 114.00092 * 299.99185 * 11 9 8 35 35 H 1.09002 * 109.46853 * 304.99476 * 12 9 8 36 36 H 1.08994 * 109.47122 * 65.00074 * 12 9 8 37 37 H 0.97002 * 120.00071 * 359.97438 * 13 12 9 38 38 H 0.97004 * 120.00145 * 179.97438 * 17 16 14 39 39 H 1.08997 * 109.47287 * 89.99800 * 25 24 2 40 40 H 1.09000 * 109.47290 * 209.99861 * 25 24 2 41 41 H 1.08997 * 109.47324 * 329.99976 * 25 24 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3210 1.0969 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6897 2.7640 -0.0896 6 7 2.7775 3.4974 0.1020 7 6 4.2079 3.1849 0.1551 8 6 2.3296 4.8911 0.1589 9 6 2.1026 5.2947 1.6172 10 1 3.0345 5.1897 2.1725 11 8 1.1056 4.4499 2.1954 12 6 1.6342 6.7501 1.6764 13 7 1.5315 7.1734 3.0752 14 6 1.1273 8.4464 3.3774 15 1 0.8846 9.1384 2.5845 16 6 1.0295 8.8473 4.7027 17 7 1.3247 8.0037 5.6690 18 14 0.4788 10.5840 5.1149 19 1 0.2079 11.3286 3.8590 20 1 -0.7586 10.5295 5.9342 21 1 1.5486 11.2743 5.8793 22 7 3.5984 0.6789 -0.0006 23 7 3.6299 -0.6083 0.0043 24 7 2.3105 -1.0826 -0.0005 25 6 1.8864 -2.4848 0.0004 26 1 -0.3632 -0.0005 1.0277 27 1 -0.3633 0.8902 -0.5135 28 1 -0.3633 -0.8898 -0.5142 29 1 4.5898 3.0576 -0.8578 30 1 4.7401 4.0007 0.6443 31 1 4.3579 2.2639 0.7184 32 1 3.0901 5.5354 -0.2823 33 1 1.3977 4.9961 -0.3965 34 1 0.2479 4.4925 1.7508 35 1 2.3523 7.3843 1.1567 36 1 0.6589 6.8376 1.1978 37 1 1.7491 6.5516 3.7873 38 1 1.2567 8.2840 6.5951 39 1 1.7802 -2.8329 -1.0270 40 1 2.6337 -3.0901 0.5136 41 1 0.9299 -2.5748 0.5152 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755775459.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:31:57 Heat of formation + Delta-G solvation = 8.057130 kcal Electronic energy + Delta-G solvation = -24250.095304 eV Core-core repulsion = 20588.273604 eV Total energy + Delta-G solvation = -3661.821700 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 297.159 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -43.31734 -40.73100 -38.61342 -36.60221 -35.94223 -35.59297 -33.34566 -33.16470 -31.08918 -29.12759 -28.40533 -27.87111 -26.85125 -24.93834 -23.69441 -22.63849 -21.98514 -20.68915 -19.21889 -18.57677 -17.83348 -17.49776 -17.06275 -16.77173 -16.53315 -16.30168 -16.11764 -15.31802 -15.17943 -14.99129 -14.62872 -14.34872 -14.22781 -14.03736 -13.96718 -13.81263 -13.67465 -13.53198 -13.24204 -12.96960 -12.80444 -12.72440 -12.54490 -12.12427 -12.01480 -11.86782 -11.78386 -11.18686 -11.13450 -10.98269 -10.86712 -10.20893 -9.51833 -9.00267 -7.93673 -5.23701 0.11717 0.62328 1.14592 1.47376 1.49177 1.59286 1.93882 2.27545 2.56657 3.16407 3.36502 3.39390 3.55745 3.64565 3.72564 3.79330 4.07110 4.19471 4.33504 4.35012 4.38414 4.51813 4.55610 4.59170 4.63790 4.65632 4.72973 4.81253 4.82712 4.95275 5.04534 5.20264 5.26577 5.47142 5.49934 5.56855 6.27103 6.31453 6.84795 6.85673 7.14485 7.33259 8.09558 8.32410 9.30127 Molecular weight = 297.16amu Principal moments of inertia in cm(-1) A = 0.030908 B = 0.002904 C = 0.002837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 905.702240 B = 9640.764694 C = 9867.338629 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.129 3.871 3 C -0.131 4.131 4 C 0.602 3.398 5 O -0.555 6.555 6 N -0.596 5.596 7 C 0.075 3.925 8 C 0.096 3.904 9 C 0.097 3.903 10 H 0.084 0.916 11 O -0.566 6.566 12 C 0.125 3.875 13 N -0.742 5.742 14 C -0.245 4.245 15 H 0.079 0.921 16 C -0.080 4.080 17 N -0.971 5.971 18 Si 0.978 3.022 19 H -0.263 1.263 20 H -0.294 1.294 21 H -0.292 1.292 22 N -0.217 5.217 23 N -0.099 5.099 24 N -0.354 5.354 25 C 0.072 3.928 26 H 0.098 0.902 27 H 0.096 0.904 28 H 0.112 0.888 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.090 0.910 34 H 0.378 0.622 35 H 0.041 0.959 36 H 0.027 0.973 37 H 0.373 0.627 38 H 0.250 0.750 39 H 0.111 0.889 40 H 0.110 0.890 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.961 -22.654 -17.044 28.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.010 4.010 3 C -0.270 4.270 4 C 0.390 3.610 5 O -0.433 6.433 6 N -0.327 5.327 7 C -0.068 4.068 8 C -0.027 4.027 9 C 0.036 3.964 10 H 0.102 0.898 11 O -0.372 6.372 12 C -0.002 4.002 13 N -0.385 5.385 14 C -0.376 4.376 15 H 0.097 0.903 16 C -0.272 4.272 17 N -0.622 5.622 18 Si 0.807 3.193 19 H -0.187 1.187 20 H -0.221 1.221 21 H -0.219 1.219 22 N -0.089 5.089 23 N -0.078 5.078 24 N -0.140 5.140 25 C -0.067 4.067 26 H 0.117 0.883 27 H 0.115 0.885 28 H 0.131 0.869 29 H 0.086 0.914 30 H 0.099 0.901 31 H 0.103 0.897 32 H 0.133 0.867 33 H 0.108 0.892 34 H 0.226 0.774 35 H 0.059 0.941 36 H 0.045 0.955 37 H 0.205 0.795 38 H 0.059 0.941 39 H 0.129 0.871 40 H 0.129 0.871 41 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 2.291 -22.962 -16.775 28.529 hybrid contribution -1.265 1.038 0.570 1.733 sum 1.026 -21.924 -16.205 27.282 Atomic orbital electron populations 1.20817 0.82482 1.06445 1.05415 1.22321 0.97408 0.85872 0.95384 1.21274 0.89677 0.95655 1.20423 1.16920 0.85162 0.83086 0.75855 1.90686 1.16553 1.83694 1.52376 1.47533 1.07902 1.05836 1.71417 1.22225 0.78522 1.03019 1.02996 1.22158 1.03153 0.81405 0.95980 1.22395 0.91570 0.88386 0.94036 0.89763 1.86524 1.24037 1.66431 1.60232 1.21437 0.98454 0.93978 0.86350 1.42501 1.81352 1.12033 1.02617 1.19718 1.35868 0.90100 0.91941 0.90294 1.25659 1.03558 1.02310 0.95705 1.69869 1.57014 1.36456 0.98879 0.85009 0.76914 0.79447 0.77980 1.18732 1.22141 1.21943 1.74674 1.19283 1.04232 1.10739 1.81873 0.97974 1.03658 1.24295 1.50579 1.05269 1.09297 1.48807 1.22700 1.04050 0.73254 1.06647 0.88330 0.88508 0.86909 0.91371 0.90125 0.89746 0.86670 0.89170 0.77388 0.94082 0.95496 0.79516 0.94076 0.87102 0.87112 0.85790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.26 9.44 71.24 0.67 -0.59 16 2 C 0.13 2.60 7.02 41.72 0.29 2.89 16 3 C -0.13 -3.49 6.70 40.81 0.27 -3.21 16 4 C 0.60 17.80 7.14 86.69 0.62 18.42 16 5 O -0.55 -17.63 13.22 1.01 0.01 -17.62 16 6 N -0.60 -16.24 2.83 -850.55 -2.40 -18.64 16 7 C 0.08 1.74 9.56 127.77 1.22 2.96 16 8 C 0.10 2.56 5.13 86.38 0.44 3.00 16 9 C 0.10 3.33 3.27 30.60 0.10 3.43 16 10 H 0.08 3.11 8.14 -2.39 -0.02 3.09 16 11 O -0.57 -22.05 12.15 -143.94 -1.75 -23.80 16 12 C 0.13 5.03 5.90 86.38 0.51 5.54 16 13 N -0.74 -39.57 5.55 -343.45 -1.91 -41.48 16 14 C -0.24 -14.08 9.99 84.03 0.84 -13.24 16 15 H 0.08 4.31 7.83 -2.91 -0.02 4.28 16 16 C -0.08 -4.77 5.50 84.86 0.47 -4.31 16 17 N -0.97 -62.01 13.06 21.65 0.28 -61.73 16 18 Si 0.98 47.27 29.55 68.60 2.03 49.29 16 19 H -0.26 -11.81 7.11 99.48 0.71 -11.11 16 20 H -0.29 -14.23 7.11 99.48 0.71 -13.52 16 21 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 22 N -0.22 -5.84 8.80 -50.00 -0.44 -6.28 16 23 N -0.10 -2.39 13.78 37.02 0.51 -1.88 16 24 N -0.35 -6.00 4.03 -355.11 -1.43 -7.43 16 25 C 0.07 0.34 11.18 127.77 1.43 1.76 16 26 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 27 H 0.10 1.76 6.34 -2.39 -0.02 1.74 16 28 H 0.11 0.60 7.83 -2.39 -0.02 0.58 16 29 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 30 H 0.08 1.66 8.03 -2.38 -0.02 1.64 16 31 H 0.08 2.20 5.33 -2.39 -0.01 2.18 16 32 H 0.12 2.43 8.07 -2.39 -0.02 2.41 16 33 H 0.09 2.42 7.39 -2.39 -0.02 2.40 16 34 H 0.38 13.52 8.53 -74.06 -0.63 12.89 16 35 H 0.04 1.55 8.14 -2.39 -0.02 1.53 16 36 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.37 21.84 7.67 -92.71 -0.71 21.13 16 38 H 0.25 15.40 8.31 -92.71 -0.77 14.63 16 39 H 0.11 0.09 8.14 -2.39 -0.02 0.07 16 40 H 0.11 0.36 8.14 -2.39 -0.02 0.34 16 41 H 0.12 -0.06 7.77 -2.39 -0.02 -0.08 16 Total: -1.00 -79.83 345.19 1.50 -78.34 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -0.27 Total: 34.56 kcal Atomic # 6 Polarization: 9.80 SS G_CDS: 6.87 Total: 16.66 kcal Atomic # 7 Polarization: -132.04 SS G_CDS: -5.39 Total: -137.43 kcal Atomic # 8 Polarization: -39.68 SS G_CDS: -1.73 Total: -41.42 kcal Atomic # 14 Polarization: 47.27 SS G_CDS: 2.03 Total: 49.29 kcal Total: -79.83 1.50 -78.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755775459.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.395 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.497 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.338 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.057 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds