Wall clock time and date at job start Tue Mar 31 2020 04:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47414 * 2 1 4 4 N 1.46498 * 109.47021 * 180.02562 * 3 2 1 5 5 C 1.34779 * 119.99575 * 180.02562 * 4 3 2 6 6 O 1.21285 * 120.00366 * 359.97438 * 5 4 3 7 7 C 1.50704 * 119.99792 * 179.97438 * 5 4 3 8 8 C 1.53119 * 109.51965 * 179.97438 * 7 5 4 9 9 C 1.53039 * 109.27478 * 182.37566 * 8 7 5 10 10 N 1.46852 * 109.52336 * 59.18093 * 9 8 7 11 11 C 1.46900 * 111.00118 * 174.15791 * 10 9 8 12 12 C 1.50697 * 109.47237 * 293.61170 * 11 10 9 13 13 O 1.21294 * 119.99957 * 353.73088 * 12 11 10 14 14 N 1.34777 * 120.00218 * 173.72893 * 12 11 10 15 15 C 1.37099 * 120.00043 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99929 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99738 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48508 * 109.47281 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.47325 * 120.00225 * 19 17 15 22 22 H 1.48503 * 109.47321 * 240.00026 * 19 17 15 23 23 C 1.46845 * 111.19897 * 298.25829 * 10 9 8 24 24 C 1.53038 * 109.52423 * 61.74130 * 23 10 9 25 25 H 1.08997 * 109.46708 * 60.00286 * 1 2 3 26 26 H 1.08998 * 109.47338 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.46902 * 300.00700 * 1 2 3 28 28 H 1.08998 * 109.46902 * 239.99300 * 2 1 3 29 29 H 1.09006 * 109.46774 * 119.99641 * 2 1 3 30 30 H 1.08994 * 109.47194 * 59.99700 * 3 2 1 31 31 H 1.09006 * 109.46857 * 299.99590 * 3 2 1 32 32 H 0.96999 * 120.00516 * 359.97438 * 4 3 2 33 33 H 1.08994 * 109.52012 * 300.12525 * 7 5 4 34 34 H 1.08998 * 109.50519 * 62.44254 * 8 7 5 35 35 H 1.08998 * 109.50523 * 302.31479 * 8 7 5 36 36 H 1.08994 * 109.46299 * 299.16822 * 9 8 7 37 37 H 1.09003 * 109.45395 * 179.18930 * 9 8 7 38 38 H 1.08996 * 109.46919 * 173.61386 * 11 10 9 39 39 H 1.08994 * 109.47139 * 53.61230 * 11 10 9 40 40 H 0.97002 * 119.99804 * 0.02562 * 14 12 11 41 41 H 0.96995 * 120.00108 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.46555 * 181.75400 * 23 10 9 43 43 H 1.09004 * 109.46392 * 301.72721 * 23 10 9 44 44 H 1.08998 * 109.50374 * 180.88473 * 24 23 10 45 45 H 1.09001 * 109.50604 * 60.76106 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.1790 2.6096 -0.0002 6 8 3.5726 3.6600 0.0002 7 6 5.6860 2.6095 -0.0003 8 6 6.1977 4.0527 -0.0004 9 6 7.7269 4.0465 -0.0603 10 7 8.1675 3.3519 -1.2768 11 6 9.6245 3.4467 -1.4387 12 6 10.0093 4.8811 -1.6944 13 8 9.1485 5.7213 -1.8507 14 7 11.3098 5.2305 -1.7493 15 6 11.6598 6.5354 -1.9825 16 1 10.8934 7.2834 -2.1217 17 6 13.0007 6.8954 -2.0397 18 7 13.9332 5.9851 -1.8707 19 14 13.4776 8.6734 -2.3566 20 1 12.2503 9.4953 -2.5107 21 1 14.2741 9.1839 -1.2120 22 1 14.2875 8.7549 -3.5986 23 6 7.7281 1.9508 -1.2769 24 6 6.1989 1.8943 -1.2533 25 1 -0.3632 0.5138 -0.8900 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5138 0.8901 30 1 1.6768 1.9563 0.8899 31 1 1.6768 1.9563 -0.8901 32 1 3.9901 0.6023 -0.0006 33 1 6.0502 2.0936 0.8881 34 1 5.8713 4.5546 0.9105 35 1 5.8016 4.5792 -0.8687 36 1 8.1226 3.5319 0.8152 37 1 8.0938 5.0729 -0.0751 38 1 9.9372 2.8309 -2.2819 39 1 10.1146 3.0954 -0.5307 40 1 11.9982 4.5585 -1.6247 41 1 14.8692 6.2364 -1.9110 42 1 8.0959 1.4548 -2.1751 43 1 8.1237 1.4459 -0.3956 44 1 5.8733 0.8542 -1.2375 45 1 5.8028 2.3869 -2.1413 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066492245.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:09:35 Heat of formation + Delta-G solvation = -87.587614 kcal Electronic energy + Delta-G solvation = -23977.069372 eV Core-core repulsion = 20414.640548 eV Total energy + Delta-G solvation = -3562.428824 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.29080 -38.78549 -37.36359 -36.03472 -34.01651 -33.38816 -32.62722 -31.17713 -30.64815 -28.02511 -26.45256 -24.76468 -23.27754 -22.94002 -22.00881 -20.68604 -19.54761 -19.13283 -17.82523 -17.21939 -16.33464 -16.15470 -15.90956 -15.38377 -14.92676 -14.76849 -14.54680 -14.22157 -13.89389 -13.72182 -13.53150 -13.29667 -13.11421 -13.06173 -12.53778 -12.46326 -12.25654 -11.89296 -11.61463 -11.57537 -11.45918 -11.32143 -11.15338 -11.04108 -10.93576 -10.58666 -10.33694 -10.29974 -10.19069 -9.73163 -9.44164 -9.28234 -8.39331 -7.93493 -7.81526 -6.38605 -3.78979 2.56670 2.99079 3.18813 3.29239 3.36883 3.95041 4.00132 4.26924 4.40773 4.53265 4.55221 4.71741 4.78155 4.84007 5.09792 5.16812 5.20231 5.21401 5.27601 5.34086 5.38486 5.45975 5.57636 5.59710 5.61718 5.67983 5.69062 5.77473 5.82646 5.92148 6.00877 6.05549 6.16948 6.21492 6.32338 6.48899 6.60996 7.29802 7.33307 7.45863 7.58847 8.10669 8.11686 8.65987 9.22195 9.58685 10.10961 10.79356 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.046568 B = 0.002383 C = 0.002307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 601.124119 B =11745.720668 C =12134.647308 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.136 4.136 3 C 0.117 3.883 4 N -0.736 5.736 5 C 0.519 3.481 6 O -0.535 6.535 7 C -0.108 4.108 8 C -0.091 4.091 9 C 0.056 3.944 10 N -0.516 5.516 11 C 0.047 3.953 12 C 0.443 3.557 13 O -0.574 6.574 14 N -0.567 5.567 15 C -0.296 4.296 16 H 0.104 0.896 17 C 0.021 3.979 18 N -0.903 5.903 19 Si 0.929 3.071 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.282 1.282 23 C 0.057 3.943 24 C -0.103 4.103 25 H 0.058 0.942 26 H 0.059 0.941 27 H 0.057 0.943 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.399 0.601 33 H 0.092 0.908 34 H 0.069 0.931 35 H 0.081 0.919 36 H 0.023 0.977 37 H 0.101 0.899 38 H 0.089 0.911 39 H 0.046 0.954 40 H 0.391 0.609 41 H 0.270 0.730 42 H 0.077 0.923 43 H 0.031 0.969 44 H 0.066 0.934 45 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.970 -16.869 5.102 25.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.174 4.174 3 C -0.007 4.007 4 N -0.389 5.389 5 C 0.306 3.694 6 O -0.410 6.410 7 C -0.129 4.129 8 C -0.130 4.130 9 C -0.072 4.072 10 N -0.240 5.240 11 C -0.084 4.084 12 C 0.228 3.772 13 O -0.457 6.457 14 N -0.204 5.204 15 C -0.426 4.426 16 H 0.121 0.879 17 C -0.180 4.180 18 N -0.545 5.545 19 Si 0.756 3.244 20 H -0.192 1.192 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.071 4.071 24 C -0.141 4.141 25 H 0.077 0.923 26 H 0.078 0.922 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.085 0.915 32 H 0.233 0.767 33 H 0.110 0.890 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.041 0.959 37 H 0.119 0.881 38 H 0.107 0.893 39 H 0.064 0.936 40 H 0.224 0.776 41 H 0.080 0.920 42 H 0.096 0.904 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -19.025 -15.256 4.593 24.815 hybrid contribution 1.439 -0.524 0.616 1.651 sum -17.585 -15.780 5.210 24.195 Atomic orbital electron populations 1.21680 0.94580 1.02126 1.02397 1.21738 0.97002 0.95926 1.02695 1.21384 0.79917 0.96976 1.02419 1.46073 1.07159 1.08901 1.76788 1.20813 0.90245 0.83305 0.75085 1.90709 1.70445 1.31342 1.48543 1.21461 0.90685 1.00452 1.00331 1.21378 0.94755 0.93243 1.03584 1.22214 0.94631 1.01409 0.88920 1.61489 1.11636 1.12152 1.38763 1.21841 0.87955 0.97569 1.01081 1.19775 0.83466 0.89344 0.84574 1.90521 1.49066 1.51661 1.54496 1.41889 1.05267 1.10243 1.62977 1.19754 0.92236 0.85348 1.45257 0.87860 1.25252 0.95401 0.99847 0.97548 1.69619 1.00772 1.33693 1.50402 0.85810 0.78677 0.82130 0.77793 1.19211 1.20831 1.20797 1.22066 0.94616 0.89692 1.00759 1.21554 0.95881 0.99280 0.97424 0.92291 0.92201 0.92361 0.91265 0.91367 0.91643 0.91542 0.76668 0.89021 0.91228 0.89992 0.95919 0.88092 0.89307 0.93608 0.77555 0.92003 0.90436 0.95090 0.91511 0.90315 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.71 9.91 37.16 0.37 -0.34 16 2 C -0.14 -0.69 6.05 -26.73 -0.16 -0.86 16 3 C 0.12 0.93 5.67 -4.04 -0.02 0.91 16 4 N -0.74 -6.30 5.46 -60.29 -0.33 -6.63 16 5 C 0.52 6.37 7.16 -10.98 -0.08 6.29 16 6 O -0.53 -8.89 15.98 5.55 0.09 -8.80 16 7 C -0.11 -1.23 2.59 -91.64 -0.24 -1.47 16 8 C -0.09 -1.37 4.68 -26.65 -0.12 -1.49 16 9 C 0.06 0.92 5.12 -3.83 -0.02 0.90 16 10 N -0.52 -8.56 4.35 -236.12 -1.03 -9.59 16 11 C 0.05 0.83 5.45 -4.98 -0.03 0.81 16 12 C 0.44 10.51 7.31 -10.99 -0.08 10.43 16 13 O -0.57 -15.66 14.29 5.55 0.08 -15.58 16 14 N -0.57 -14.42 5.29 -10.96 -0.06 -14.48 16 15 C -0.30 -8.32 9.68 -14.93 -0.14 -8.46 16 16 H 0.10 3.05 7.16 -52.49 -0.38 2.68 16 17 C 0.02 0.56 5.50 -17.47 -0.10 0.46 16 18 N -0.90 -24.70 13.05 55.50 0.72 -23.98 16 19 Si 0.93 21.27 29.55 -169.99 -5.02 16.25 16 20 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 21 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 23 C 0.06 0.69 5.46 -3.83 -0.02 0.66 16 24 C -0.10 -1.08 5.26 -26.65 -0.14 -1.22 16 25 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 26 H 0.06 0.24 8.14 -51.93 -0.42 -0.19 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.40 2.28 7.96 -40.82 -0.33 1.95 16 33 H 0.09 0.88 8.14 -51.93 -0.42 0.45 16 34 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 35 H 0.08 1.44 8.04 -51.93 -0.42 1.02 16 36 H 0.02 0.34 8.14 -51.93 -0.42 -0.08 16 37 H 0.10 2.05 6.06 -51.93 -0.31 1.74 16 38 H 0.09 1.42 7.98 -51.93 -0.41 1.00 16 39 H 0.05 0.74 8.12 -51.93 -0.42 0.32 16 40 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 41 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 42 H 0.08 0.86 8.01 -51.93 -0.42 0.44 16 43 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 44 H 0.07 0.48 7.67 -51.93 -0.40 0.08 16 45 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 LS Contribution 364.02 15.07 5.49 5.49 Total: -1.00 -33.74 364.02 -8.46 -42.20 By element: Atomic # 1 Polarization: 16.09 SS G_CDS: -7.61 Total: 8.48 kcal Atomic # 6 Polarization: 7.42 SS G_CDS: -0.79 Total: 6.64 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.69 Total: -54.67 kcal Atomic # 8 Polarization: -24.55 SS G_CDS: 0.17 Total: -24.38 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -33.74 -8.46 -42.20 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066492245.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.388 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.130 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.200 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds