Wall clock time and date at job start Tue Mar 31 2020 03:47:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47371 * 2 1 4 4 C 1.50696 * 109.47119 * 120.00888 * 2 1 3 5 5 O 1.21278 * 120.00098 * 359.97438 * 4 2 1 6 6 N 1.34776 * 119.99810 * 180.02562 * 4 2 1 7 7 C 1.46506 * 119.99826 * 179.97438 * 6 4 2 8 8 C 1.53119 * 109.51978 * 204.99618 * 7 6 4 9 9 C 1.53039 * 109.27478 * 182.37658 * 8 7 6 10 10 N 1.46852 * 109.52336 * 59.18093 * 9 8 7 11 11 C 1.46900 * 111.00118 * 174.15791 * 10 9 8 12 12 C 1.50697 * 109.47237 * 293.61170 * 11 10 9 13 13 O 1.21294 * 119.99957 * 353.73088 * 12 11 10 14 14 N 1.34777 * 120.00218 * 173.72893 * 12 11 10 15 15 C 1.37099 * 120.00043 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99929 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99738 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47259 * 60.00225 * 19 17 15 21 21 H 1.48499 * 109.47362 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47363 * 300.00100 * 19 17 15 23 23 C 1.46845 * 111.19897 * 298.25829 * 10 9 8 24 24 C 1.53038 * 109.52423 * 61.74130 * 23 10 9 25 25 H 1.09000 * 109.46834 * 299.99858 * 1 2 3 26 26 H 1.09006 * 109.46975 * 59.99662 * 1 2 3 27 27 H 1.09001 * 109.47001 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46915 * 240.00279 * 2 1 3 29 29 H 1.08997 * 109.46964 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47455 * 300.00596 * 3 2 1 31 31 H 1.09000 * 109.47026 * 60.00260 * 3 2 1 32 32 H 0.97000 * 120.00090 * 359.97438 * 6 4 2 33 33 H 1.08994 * 109.52080 * 325.12579 * 7 6 4 34 34 H 1.08998 * 109.50519 * 62.44346 * 8 7 6 35 35 H 1.08998 * 109.50523 * 302.31571 * 8 7 6 36 36 H 1.08994 * 109.46299 * 299.16822 * 9 8 7 37 37 H 1.09003 * 109.45395 * 179.18930 * 9 8 7 38 38 H 1.08996 * 109.46919 * 173.61386 * 11 10 9 39 39 H 1.08994 * 109.47139 * 53.61230 * 11 10 9 40 40 H 0.97002 * 119.99804 * 0.02562 * 14 12 11 41 41 H 0.96995 * 120.00108 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.46555 * 181.75400 * 23 10 9 43 43 H 1.09004 * 109.46392 * 301.72721 * 23 10 9 44 44 H 1.08998 * 109.50374 * 180.88473 * 24 23 10 45 45 H 1.09001 * 109.50604 * 60.76106 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 1.2443 -1.1712 2.0288 6 7 3.3575 -0.8333 1.4438 7 6 3.8458 -1.5236 2.6402 8 6 5.2494 -1.0182 2.9854 9 6 5.7777 -1.7847 4.2001 10 7 5.8163 -3.2208 3.8954 11 6 6.4475 -3.9739 4.9873 12 6 7.9032 -3.5958 5.0824 13 8 8.3964 -2.8673 4.2474 14 7 8.6571 -4.0670 6.0953 15 6 9.9816 -3.7235 6.1815 16 1 10.4206 -3.0749 5.4379 17 6 10.7589 -4.2098 7.2255 18 7 10.2248 -4.9995 8.1300 19 14 12.5633 -3.7412 7.3434 20 1 12.6848 -2.2660 7.4627 21 1 13.1653 -4.3861 8.5379 22 1 13.2745 -4.1993 6.1229 23 6 4.4728 -3.7386 3.6069 24 6 3.9055 -3.0304 2.3745 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.9878 -0.4645 0.8053 33 1 3.1724 -1.3272 3.4744 34 1 5.2061 0.0459 3.2174 35 1 5.9134 -1.1796 2.1362 36 1 5.1208 -1.6119 5.0525 37 1 6.7827 -1.4372 4.4396 38 1 6.3619 -5.0422 4.7888 39 1 5.9487 -3.7378 5.9273 40 1 8.2628 -4.6499 6.7629 41 1 10.7675 -5.3393 8.8585 42 1 4.5299 -4.8102 3.4157 43 1 3.8220 -3.5566 4.4621 44 1 2.9021 -3.4038 2.1700 45 1 4.5483 -3.2234 1.5157 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000066494405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:33 Heat of formation + Delta-G solvation = -85.565058 kcal Electronic energy + Delta-G solvation = -24230.266051 eV Core-core repulsion = 20667.924932 eV Total energy + Delta-G solvation = -3562.341119 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.32142 -38.98230 -37.57900 -35.01721 -34.73741 -33.83120 -31.58686 -31.09715 -30.72375 -27.53845 -27.09476 -24.83957 -23.75749 -23.08840 -22.08670 -20.32779 -19.55766 -19.14868 -17.84884 -17.33218 -16.49992 -16.00231 -15.60339 -15.23980 -14.94046 -14.58191 -14.39515 -14.14641 -13.86694 -13.78915 -13.44123 -13.38980 -13.02468 -12.89500 -12.64046 -12.27862 -12.22410 -11.87650 -11.59938 -11.50945 -11.43959 -11.41270 -11.21843 -11.09282 -11.01294 -10.75722 -10.44280 -10.39868 -10.20521 -9.81876 -9.45566 -9.12202 -8.42363 -7.96170 -7.83892 -6.40554 -3.81379 2.49918 3.01784 3.20323 3.26064 3.30186 3.92614 3.99900 4.25099 4.37907 4.54419 4.62162 4.78021 4.83275 5.06379 5.09441 5.15257 5.25477 5.26210 5.33072 5.36642 5.48088 5.50221 5.52762 5.59738 5.68337 5.71787 5.79014 5.83511 5.88258 5.94564 6.02783 6.03232 6.14643 6.24864 6.32351 6.41936 6.46073 7.28988 7.37644 7.43436 7.55812 8.07470 8.09468 8.63344 9.19195 9.56135 10.08066 10.77171 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.042071 B = 0.002506 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.378942 B =11170.687977 C =11605.584291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.117 4.117 3 C -0.144 4.144 4 C 0.515 3.485 5 O -0.542 6.542 6 N -0.724 5.724 7 C 0.142 3.858 8 C -0.118 4.118 9 C 0.059 3.941 10 N -0.515 5.515 11 C 0.046 3.954 12 C 0.444 3.556 13 O -0.577 6.577 14 N -0.565 5.565 15 C -0.299 4.299 16 H 0.102 0.898 17 C 0.022 3.978 18 N -0.902 5.902 19 Si 0.931 3.069 20 H -0.274 1.274 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.058 3.942 24 C -0.122 4.122 25 H 0.061 0.939 26 H 0.060 0.940 27 H 0.061 0.939 28 H 0.096 0.904 29 H 0.061 0.939 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.400 0.600 33 H 0.083 0.917 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.025 0.975 37 H 0.102 0.898 38 H 0.089 0.911 39 H 0.047 0.953 40 H 0.392 0.608 41 H 0.272 0.728 42 H 0.077 0.923 43 H 0.031 0.969 44 H 0.067 0.933 45 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.332 8.051 -13.189 22.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.138 4.138 3 C -0.202 4.202 4 C 0.301 3.699 5 O -0.419 6.419 6 N -0.375 5.375 7 C 0.038 3.962 8 C -0.156 4.156 9 C -0.069 4.069 10 N -0.240 5.240 11 C -0.085 4.085 12 C 0.229 3.771 13 O -0.461 6.461 14 N -0.202 5.202 15 C -0.428 4.428 16 H 0.120 0.880 17 C -0.180 4.180 18 N -0.544 5.544 19 Si 0.758 3.242 20 H -0.199 1.199 21 H -0.210 1.210 22 H -0.199 1.199 23 C -0.071 4.071 24 C -0.161 4.161 25 H 0.080 0.920 26 H 0.079 0.921 27 H 0.080 0.920 28 H 0.114 0.886 29 H 0.080 0.920 30 H 0.086 0.914 31 H 0.080 0.920 32 H 0.234 0.766 33 H 0.101 0.899 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.043 0.957 37 H 0.120 0.880 38 H 0.108 0.892 39 H 0.065 0.935 40 H 0.225 0.775 41 H 0.082 0.918 42 H 0.095 0.905 43 H 0.050 0.950 44 H 0.086 0.914 45 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.193 8.059 -13.409 22.516 hybrid contribution 0.536 -0.038 0.991 1.127 sum -15.657 8.021 -12.418 21.533 Atomic orbital electron populations 1.21606 0.92550 1.02816 1.02013 1.21327 0.98387 0.97322 0.96762 1.21792 1.01292 0.94198 1.02925 1.20706 0.82281 0.79319 0.87577 1.90694 1.55347 1.48805 1.47021 1.46161 1.07014 1.58561 1.25720 1.21112 0.95742 0.91857 0.87477 1.21822 0.94456 0.99242 1.00114 1.22110 1.02581 0.87521 0.94696 1.61520 1.18291 1.02904 1.41276 1.21846 0.94964 0.98993 0.92726 1.19755 0.87420 0.85731 0.84193 1.90495 1.73632 1.40232 1.41768 1.41884 1.10101 1.44306 1.23923 1.19637 0.84822 1.28126 1.10230 0.87991 1.25262 1.00501 0.96608 0.95628 1.69603 1.37405 1.33282 1.14072 0.85922 0.81947 0.78743 0.77617 1.19945 1.21014 1.19912 1.22052 0.89013 0.99441 0.96583 1.21923 1.00829 0.94430 0.98879 0.91961 0.92143 0.91979 0.88566 0.92043 0.91417 0.92044 0.76603 0.89888 0.91291 0.90244 0.95683 0.87970 0.89246 0.93542 0.77501 0.91842 0.90502 0.95038 0.91391 0.90804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.02 8.48 37.16 0.32 -0.70 16 2 C -0.12 -0.86 3.26 -91.77 -0.30 -1.16 16 3 C -0.14 -0.84 9.09 37.16 0.34 -0.50 16 4 C 0.51 5.61 7.13 -10.99 -0.08 5.54 16 5 O -0.54 -8.09 15.64 5.56 0.09 -8.01 16 6 N -0.72 -7.09 4.98 -53.68 -0.27 -7.36 16 7 C 0.14 1.70 2.52 -67.80 -0.17 1.53 16 8 C -0.12 -1.49 5.57 -26.65 -0.15 -1.64 16 9 C 0.06 0.94 5.12 -3.83 -0.02 0.92 16 10 N -0.52 -8.53 4.35 -236.12 -1.03 -9.56 16 11 C 0.05 0.83 5.45 -4.98 -0.03 0.80 16 12 C 0.44 10.38 7.31 -10.99 -0.08 10.30 16 13 O -0.58 -15.28 14.29 5.55 0.08 -15.20 16 14 N -0.57 -14.27 5.29 -10.96 -0.06 -14.33 16 15 C -0.30 -8.28 9.68 -14.93 -0.14 -8.42 16 16 H 0.10 2.95 7.16 -52.49 -0.38 2.57 16 17 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 18 N -0.90 -24.56 13.05 55.50 0.72 -23.83 16 19 Si 0.93 21.01 29.55 -169.99 -5.02 15.99 16 20 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 21 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 C 0.06 0.78 5.46 -3.83 -0.02 0.76 16 24 C -0.12 -1.51 5.68 -26.65 -0.15 -1.66 16 25 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 26 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.06 0.54 8.10 -51.93 -0.42 0.12 16 28 H 0.10 0.56 8.14 -51.92 -0.42 0.14 16 29 H 0.06 0.31 7.56 -51.93 -0.39 -0.09 16 30 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16 31 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 32 H 0.40 2.95 8.02 -40.82 -0.33 2.62 16 33 H 0.08 1.14 7.58 -51.93 -0.39 0.74 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.08 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.03 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.10 1.96 6.06 -51.93 -0.31 1.65 16 38 H 0.09 1.46 7.98 -51.93 -0.41 1.05 16 39 H 0.05 0.77 8.12 -51.93 -0.42 0.35 16 40 H 0.39 9.51 7.90 -40.82 -0.32 9.18 16 41 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 42 H 0.08 0.97 8.01 -51.93 -0.42 0.56 16 43 H 0.03 0.42 8.14 -51.93 -0.42 0.00 16 44 H 0.07 0.85 8.14 -51.93 -0.42 0.43 16 45 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 LS Contribution 363.00 15.07 5.47 5.47 Total: -1.00 -32.44 363.00 -8.18 -40.62 By element: Atomic # 1 Polarization: 17.56 SS G_CDS: -7.58 Total: 9.98 kcal Atomic # 6 Polarization: 6.83 SS G_CDS: -0.58 Total: 6.24 kcal Atomic # 7 Polarization: -54.45 SS G_CDS: -0.63 Total: -55.08 kcal Atomic # 8 Polarization: -23.38 SS G_CDS: 0.17 Total: -23.21 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -5.02 Total: 15.99 kcal Total LS contribution 5.47 Total: 5.47 kcal Total: -32.44 -8.18 -40.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066494405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.950 kcal (2) G-P(sol) polarization free energy of solvation -32.437 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.615 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.565 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds