Wall clock time and date at job start Tue Mar 31 2020 03:47:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47371 * 2 1 4 4 C 1.50696 * 109.47119 * 120.00888 * 2 1 3 5 5 O 1.21278 * 120.00098 * 359.97438 * 4 2 1 6 6 N 1.34776 * 119.99810 * 180.02562 * 4 2 1 7 7 C 1.46506 * 119.99826 * 179.97438 * 6 4 2 8 8 C 1.53119 * 109.51978 * 204.99618 * 7 6 4 9 9 C 1.53039 * 109.27478 * 182.37658 * 8 7 6 10 10 N 1.46852 * 109.52336 * 59.18093 * 9 8 7 11 11 C 1.46900 * 111.00118 * 174.15791 * 10 9 8 12 12 C 1.50697 * 109.47237 * 293.61170 * 11 10 9 13 13 O 1.21294 * 119.99957 * 353.73088 * 12 11 10 14 14 N 1.34777 * 120.00218 * 173.72893 * 12 11 10 15 15 C 1.37099 * 120.00043 * 179.97438 * 14 12 11 16 16 H 1.07997 * 119.99929 * 0.02562 * 15 14 12 17 17 C 1.38955 * 119.99738 * 180.02562 * 15 14 12 18 18 N 1.31412 * 120.00132 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 119.99888 * 180.02562 * 17 15 14 20 20 H 1.48501 * 109.47259 * 60.00225 * 19 17 15 21 21 H 1.48499 * 109.47362 * 180.02562 * 19 17 15 22 22 H 1.48507 * 109.47363 * 300.00100 * 19 17 15 23 23 C 1.46845 * 111.19897 * 298.25829 * 10 9 8 24 24 C 1.53038 * 109.52423 * 61.74130 * 23 10 9 25 25 H 1.09000 * 109.46834 * 299.99858 * 1 2 3 26 26 H 1.09006 * 109.46975 * 59.99662 * 1 2 3 27 27 H 1.09001 * 109.47001 * 179.97438 * 1 2 3 28 28 H 1.09009 * 109.46915 * 240.00279 * 2 1 3 29 29 H 1.08997 * 109.46964 * 179.97438 * 3 2 1 30 30 H 1.09002 * 109.47455 * 300.00596 * 3 2 1 31 31 H 1.09000 * 109.47026 * 60.00260 * 3 2 1 32 32 H 0.97000 * 120.00090 * 359.97438 * 6 4 2 33 33 H 1.08994 * 109.52080 * 325.12579 * 7 6 4 34 34 H 1.08998 * 109.50519 * 62.44346 * 8 7 6 35 35 H 1.08998 * 109.50523 * 302.31571 * 8 7 6 36 36 H 1.08994 * 109.46299 * 299.16822 * 9 8 7 37 37 H 1.09003 * 109.45395 * 179.18930 * 9 8 7 38 38 H 1.08996 * 109.46919 * 173.61386 * 11 10 9 39 39 H 1.08994 * 109.47139 * 53.61230 * 11 10 9 40 40 H 0.97002 * 119.99804 * 0.02562 * 14 12 11 41 41 H 0.96995 * 120.00108 * 179.97438 * 18 17 15 42 42 H 1.08998 * 109.46555 * 181.75400 * 23 10 9 43 43 H 1.09004 * 109.46392 * 301.72721 * 23 10 9 44 44 H 1.08998 * 109.50374 * 180.88473 * 24 23 10 45 45 H 1.09001 * 109.50604 * 60.76106 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7106 1.2303 5 8 1.2443 -1.1712 2.0288 6 7 3.3575 -0.8333 1.4438 7 6 3.8458 -1.5236 2.6402 8 6 5.2494 -1.0182 2.9854 9 6 5.7777 -1.7847 4.2001 10 7 5.8163 -3.2208 3.8954 11 6 6.4475 -3.9739 4.9873 12 6 7.9032 -3.5958 5.0824 13 8 8.3964 -2.8673 4.2474 14 7 8.6571 -4.0670 6.0953 15 6 9.9816 -3.7235 6.1815 16 1 10.4206 -3.0749 5.4379 17 6 10.7589 -4.2098 7.2255 18 7 10.2248 -4.9995 8.1300 19 14 12.5633 -3.7412 7.3434 20 1 12.6848 -2.2660 7.4627 21 1 13.1653 -4.3861 8.5379 22 1 13.2745 -4.1993 6.1229 23 6 4.4728 -3.7386 3.6069 24 6 3.9055 -3.0304 2.3745 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 3.1301 1.4424 0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9563 0.8900 32 1 3.9878 -0.4645 0.8053 33 1 3.1724 -1.3272 3.4744 34 1 5.2061 0.0459 3.2174 35 1 5.9134 -1.1796 2.1362 36 1 5.1208 -1.6119 5.0525 37 1 6.7827 -1.4372 4.4396 38 1 6.3619 -5.0422 4.7888 39 1 5.9487 -3.7378 5.9273 40 1 8.2628 -4.6499 6.7629 41 1 10.7675 -5.3393 8.8585 42 1 4.5299 -4.8102 3.4157 43 1 3.8220 -3.5566 4.4621 44 1 2.9021 -3.4038 2.1700 45 1 4.5483 -3.2234 1.5157 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000066494405.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:47:32 Heat of formation + Delta-G solvation = -109.546383 kcal Electronic energy + Delta-G solvation = -24231.305959 eV Core-core repulsion = 20667.924932 eV Total energy + Delta-G solvation = -3563.381027 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.27695 -40.43181 -39.09068 -36.24693 -35.71718 -35.41724 -33.29579 -32.52425 -31.84816 -28.75122 -27.91601 -26.47860 -24.91328 -24.19530 -23.12638 -21.27518 -21.01529 -20.47098 -19.85715 -18.12004 -17.76428 -17.44343 -16.67887 -16.53572 -16.34052 -16.16799 -15.59637 -15.35596 -15.28544 -15.04798 -14.66590 -14.42998 -14.19800 -13.87320 -13.62411 -13.47976 -13.20978 -13.15081 -12.94231 -12.85468 -12.71309 -12.44478 -12.38385 -12.19988 -12.11894 -12.05304 -11.95435 -11.82533 -11.61669 -11.38456 -10.71698 -10.26337 -10.05437 -9.98072 -9.21834 -8.44784 -5.93349 1.40593 1.42204 1.53131 1.66277 2.07519 2.19206 2.29240 2.74419 3.22063 3.38967 3.63867 3.78301 3.85356 4.01459 4.05542 4.10151 4.17961 4.29047 4.35047 4.45488 4.48132 4.52076 4.55883 4.65560 4.70979 4.77739 4.90039 4.91639 4.94932 4.96259 5.03558 5.10263 5.11071 5.28486 5.33109 5.34367 5.42190 5.52749 5.88950 6.08763 6.20870 6.59021 6.62526 7.14618 7.28381 7.58682 8.14196 8.72482 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.042071 B = 0.002506 C = 0.002412 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.378942 B =11170.687977 C =11605.584291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.511 3.489 5 O -0.587 6.587 6 N -0.713 5.713 7 C 0.150 3.850 8 C -0.106 4.106 9 C 0.059 3.941 10 N -0.529 5.529 11 C 0.056 3.944 12 C 0.443 3.557 13 O -0.611 6.611 14 N -0.576 5.576 15 C -0.330 4.330 16 H 0.080 0.920 17 C -0.015 4.015 18 N -0.922 5.922 19 Si 0.993 3.007 20 H -0.271 1.271 21 H -0.272 1.272 22 H -0.272 1.272 23 C 0.059 3.941 24 C -0.114 4.114 25 H 0.045 0.955 26 H 0.085 0.915 27 H 0.047 0.953 28 H 0.120 0.880 29 H 0.071 0.929 30 H 0.087 0.913 31 H 0.048 0.952 32 H 0.414 0.586 33 H 0.067 0.933 34 H 0.083 0.917 35 H 0.076 0.924 36 H 0.031 0.969 37 H 0.065 0.935 38 H 0.111 0.889 39 H 0.063 0.937 40 H 0.395 0.605 41 H 0.277 0.723 42 H 0.089 0.911 43 H 0.037 0.963 44 H 0.068 0.932 45 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.733 8.466 -14.411 23.650 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.132 4.132 3 C -0.199 4.199 4 C 0.299 3.701 5 O -0.467 6.467 6 N -0.364 5.364 7 C 0.045 3.955 8 C -0.144 4.144 9 C -0.069 4.069 10 N -0.254 5.254 11 C -0.075 4.075 12 C 0.230 3.770 13 O -0.497 6.497 14 N -0.214 5.214 15 C -0.460 4.460 16 H 0.098 0.902 17 C -0.215 4.215 18 N -0.563 5.563 19 Si 0.817 3.183 20 H -0.197 1.197 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.069 4.069 24 C -0.153 4.153 25 H 0.064 0.936 26 H 0.104 0.896 27 H 0.066 0.934 28 H 0.138 0.862 29 H 0.090 0.910 30 H 0.105 0.895 31 H 0.067 0.933 32 H 0.251 0.749 33 H 0.085 0.915 34 H 0.102 0.898 35 H 0.095 0.905 36 H 0.049 0.951 37 H 0.083 0.917 38 H 0.129 0.871 39 H 0.081 0.919 40 H 0.229 0.771 41 H 0.086 0.914 42 H 0.107 0.893 43 H 0.055 0.945 44 H 0.087 0.913 45 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -16.599 8.479 -14.651 23.708 hybrid contribution 0.609 -0.153 1.341 1.481 sum -15.991 8.325 -13.310 22.409 Atomic orbital electron populations 1.21617 0.92909 1.02028 1.02420 1.21379 0.98036 0.98154 0.95585 1.21802 1.01959 0.92867 1.03296 1.21397 0.81969 0.78650 0.88098 1.90676 1.56420 1.50790 1.48801 1.46033 1.07217 1.57977 1.25209 1.20863 0.94767 0.91897 0.87953 1.21695 0.94563 0.99625 0.98547 1.22031 1.00673 0.87704 0.96529 1.61511 1.20142 1.03088 1.40676 1.21734 0.91166 1.00296 0.94305 1.20707 0.89388 0.84131 0.82731 1.90468 1.75015 1.41403 1.42779 1.41960 1.09743 1.44941 1.24756 1.19619 0.86381 1.29229 1.10758 0.90177 1.26050 1.04403 0.96181 0.94857 1.69671 1.38834 1.33525 1.14297 0.84987 0.76914 0.78512 0.77920 1.19659 1.19669 1.19678 1.22118 0.87338 1.00194 0.97234 1.21846 1.00657 0.94479 0.98314 0.93623 0.89628 0.93388 0.86214 0.90991 0.89459 0.93287 0.74905 0.91492 0.89812 0.90500 0.95097 0.91701 0.87116 0.91879 0.77131 0.91382 0.89284 0.94528 0.91310 0.90691 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.85 8.48 71.98 0.61 -1.24 16 2 C -0.11 -1.40 3.26 -11.54 -0.04 -1.43 16 3 C -0.14 -1.28 9.09 71.98 0.65 -0.62 16 4 C 0.51 10.49 7.13 87.66 0.62 11.11 16 5 O -0.59 -17.40 15.64 -3.02 -0.05 -17.45 16 6 N -0.71 -12.76 4.98 -442.15 -2.20 -14.96 16 7 C 0.15 3.41 2.52 45.07 0.11 3.53 16 8 C -0.11 -2.58 5.57 30.65 0.17 -2.40 16 9 C 0.06 1.87 5.12 86.33 0.44 2.31 16 10 N -0.53 -17.09 4.35 -900.94 -3.92 -21.00 16 11 C 0.06 1.97 5.45 85.56 0.47 2.44 16 12 C 0.44 21.03 7.31 87.66 0.64 21.67 16 13 O -0.61 -33.17 14.29 -3.07 -0.04 -33.22 16 14 N -0.58 -29.65 5.29 -306.98 -1.62 -31.28 16 15 C -0.33 -18.71 9.68 84.04 0.81 -17.90 16 16 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 17 C -0.02 -0.83 5.50 84.93 0.47 -0.36 16 18 N -0.92 -50.06 13.05 21.66 0.28 -49.78 16 19 Si 0.99 42.95 29.55 68.60 2.03 44.97 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 21 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 22 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 23 C 0.06 1.51 5.46 86.33 0.47 1.98 16 24 C -0.11 -2.65 5.68 30.65 0.17 -2.48 16 25 H 0.04 0.78 8.10 -2.39 -0.02 0.76 16 26 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 28 H 0.12 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.07 0.50 7.56 -2.39 -0.02 0.49 16 30 H 0.09 0.48 8.14 -2.39 -0.02 0.46 16 31 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 32 H 0.41 5.10 8.02 -92.71 -0.74 4.36 16 33 H 0.07 1.79 7.58 -2.39 -0.02 1.77 16 34 H 0.08 1.78 8.14 -2.39 -0.02 1.76 16 35 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 36 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 37 H 0.06 2.56 6.06 -2.39 -0.01 2.54 16 38 H 0.11 3.43 7.98 -2.39 -0.02 3.41 16 39 H 0.06 2.03 8.12 -2.39 -0.02 2.01 16 40 H 0.40 19.42 7.90 -92.71 -0.73 18.69 16 41 H 0.28 14.12 8.31 -92.71 -0.77 13.35 16 42 H 0.09 2.06 8.01 -2.39 -0.02 2.04 16 43 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 44 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 45 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 Total: -1.00 -71.37 363.00 -0.40 -71.76 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.49 Total: 34.35 kcal Atomic # 6 Polarization: 10.98 SS G_CDS: 5.61 Total: 16.59 kcal Atomic # 7 Polarization: -109.56 SS G_CDS: -7.46 Total: -117.02 kcal Atomic # 8 Polarization: -50.58 SS G_CDS: -0.09 Total: -50.67 kcal Atomic # 14 Polarization: 42.95 SS G_CDS: 2.03 Total: 44.97 kcal Total: -71.37 -0.40 -71.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000066494405.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.785 kcal (2) G-P(sol) polarization free energy of solvation -71.366 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.150 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.396 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.762 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.546 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds