Wall clock time and date at job start Tue Mar 31 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46830 * 2 1 4 4 N 1.46496 * 109.47106 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00110 * 274.35826 * 4 3 2 6 6 H 1.07995 * 119.99960 * 320.48712 * 5 4 3 7 7 C 1.38817 * 120.00213 * 140.48327 * 5 4 3 8 8 N 1.31621 * 120.00162 * 158.22447 * 7 5 4 9 9 Si 1.86799 * 119.99858 * 338.23415 * 7 5 4 10 10 H 1.48496 * 109.47612 * 95.19605 * 9 7 5 11 11 H 1.48507 * 109.46790 * 215.19461 * 9 7 5 12 12 H 1.48502 * 109.47187 * 335.19216 * 9 7 5 13 13 C 1.46498 * 120.00372 * 94.35642 * 4 3 2 14 14 C 1.50700 * 109.46986 * 89.99587 * 13 4 3 15 15 O 1.21275 * 120.00144 * 0.02562 * 14 13 4 16 16 N 1.34782 * 119.99887 * 180.02562 * 14 13 4 17 17 C 1.46967 * 120.59306 * 180.02562 * 16 14 13 18 18 C 1.53370 * 108.63027 * 235.24712 * 17 16 14 19 19 N 1.46958 * 108.63935 * 310.57742 * 18 17 16 20 20 C 1.34782 * 120.59378 * 235.20934 * 19 18 17 21 21 C 1.50698 * 120.00144 * 4.75039 * 20 19 18 22 22 O 1.21283 * 119.99568 * 184.76018 * 20 19 18 23 23 C 1.46967 * 118.81377 * 55.47558 * 19 18 17 24 24 C 1.46968 * 120.59158 * 0.02562 * 16 14 13 25 25 H 1.08997 * 109.47354 * 60.00226 * 1 2 3 26 26 H 1.09006 * 109.46904 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47221 * 300.00006 * 1 2 3 28 28 H 1.08997 * 109.47221 * 239.99993 * 2 1 3 29 29 H 1.09006 * 109.47171 * 119.99917 * 2 1 3 30 30 H 1.09007 * 109.47332 * 59.99911 * 3 2 1 31 31 H 1.08993 * 109.47340 * 299.99695 * 3 2 1 32 32 H 0.97003 * 120.00097 * 180.02562 * 8 7 5 33 33 H 1.09009 * 109.46960 * 330.00294 * 13 4 3 34 34 H 1.08998 * 109.47641 * 210.00421 * 13 4 3 35 35 H 1.08996 * 109.60754 * 115.50815 * 17 16 14 36 36 H 1.08996 * 109.60514 * 354.99070 * 17 16 14 37 37 H 1.09005 * 109.60744 * 190.82841 * 18 17 16 38 38 H 1.09005 * 109.74924 * 70.40470 * 18 17 16 39 39 H 1.09003 * 109.46698 * 85.30300 * 21 20 19 40 40 H 1.08998 * 109.47158 * 205.30889 * 21 20 19 41 41 H 1.09002 * 109.47246 * 325.31212 * 21 20 19 42 42 H 1.08999 * 109.60480 * 64.26989 * 23 19 18 43 43 H 1.09003 * 109.60861 * 184.78082 * 23 19 18 44 44 H 1.08999 * 109.61024 * 244.49154 * 24 16 14 45 45 H 1.08993 * 109.61099 * 4.84270 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.3527 1.1834 6 1 3.8339 1.8832 2.0544 7 6 5.3393 0.5796 1.2629 8 7 6.2220 0.8086 2.2120 9 14 5.6345 -0.7857 0.0226 10 1 6.4852 -0.2754 -1.0824 11 1 6.3196 -1.9215 0.6906 12 1 4.3336 -1.2458 -0.5261 13 6 4.2380 1.5388 -1.2641 14 6 4.4892 2.9885 -1.5901 15 8 4.0951 3.8559 -0.8396 16 7 5.1518 3.3212 -2.7156 17 6 5.4044 4.7308 -3.0460 18 6 4.8434 5.0142 -4.4450 19 7 5.3258 3.9739 -5.3641 20 6 5.9877 4.3066 -6.4901 21 6 6.3331 5.7478 -6.7633 22 8 6.3052 3.4460 -7.2835 23 6 5.0684 2.5645 -5.0365 24 6 5.6346 2.2807 -3.6345 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 7.0259 0.2687 2.2673 33 1 3.6492 1.0840 -2.0608 34 1 5.1904 1.0166 -1.1727 35 1 6.4774 4.9221 -3.0365 36 1 4.9094 5.3717 -2.3166 37 1 5.1866 5.9912 -4.7857 38 1 3.7539 4.9992 -4.4150 39 1 7.2718 5.9965 -6.2682 40 1 6.4376 5.8990 -7.8376 41 1 5.5396 6.3902 -6.3814 42 1 3.9947 2.3772 -5.0454 43 1 5.5602 1.9232 -5.7680 44 1 6.7240 2.2980 -3.6668 45 1 5.2942 1.3036 -3.2921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000071910875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:11 Heat of formation + Delta-G solvation = -33.107314 kcal Electronic energy + Delta-G solvation = -25462.411292 eV Core-core repulsion = 21902.344911 eV Total energy + Delta-G solvation = -3560.066380 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.45465 -39.11046 -36.98004 -35.88091 -34.00958 -32.90066 -31.91254 -31.27199 -30.09178 -27.97351 -26.78717 -25.75152 -23.83741 -22.79562 -22.09276 -20.45786 -19.78710 -18.50336 -17.46912 -16.86466 -16.35740 -16.12554 -15.71124 -15.62424 -15.37964 -14.79487 -14.38050 -14.06399 -13.94477 -13.87418 -13.41910 -13.08968 -13.04141 -12.77178 -12.52799 -12.42249 -12.32035 -12.22336 -11.74639 -11.67461 -11.50859 -11.36897 -11.18172 -10.84768 -10.76501 -10.58758 -10.22958 -10.01984 -9.88047 -9.63194 -9.27321 -9.17452 -8.55848 -8.22140 -6.87881 -6.03738 -3.46760 2.39927 2.68308 3.16006 3.27677 3.32142 3.40090 3.44139 4.31526 4.43305 4.64299 4.69130 4.82242 4.88939 5.01197 5.03180 5.08046 5.19580 5.25175 5.26730 5.37083 5.53802 5.56649 5.61043 5.68415 5.73003 5.83095 5.85339 5.89399 5.98640 6.10225 6.13496 6.22734 6.37826 6.51302 6.52651 6.72802 6.88931 7.07171 7.15430 7.71655 7.93419 8.00706 8.39423 8.77484 8.96586 9.64078 10.03407 11.11820 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.004539 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.786166 B = 6166.862223 C = 6600.703337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.145 4.145 3 C 0.157 3.843 4 N -0.580 5.580 5 C -0.258 4.258 6 H 0.080 0.920 7 C 0.036 3.964 8 N -0.895 5.895 9 Si 0.865 3.135 10 H -0.286 1.286 11 H -0.297 1.297 12 H -0.262 1.262 13 C 0.120 3.880 14 C 0.492 3.508 15 O -0.515 6.515 16 N -0.629 5.629 17 C 0.096 3.904 18 C 0.092 3.908 19 N -0.612 5.612 20 C 0.513 3.487 21 C -0.176 4.176 22 O -0.551 6.551 23 C 0.097 3.903 24 C 0.097 3.903 25 H 0.045 0.955 26 H 0.044 0.956 27 H 0.051 0.949 28 H 0.049 0.951 29 H 0.067 0.933 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.263 0.737 33 H 0.068 0.932 34 H 0.081 0.919 35 H 0.065 0.935 36 H 0.103 0.897 37 H 0.097 0.903 38 H 0.075 0.925 39 H 0.094 0.906 40 H 0.091 0.909 41 H 0.084 0.916 42 H 0.074 0.926 43 H 0.102 0.898 44 H 0.070 0.930 45 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.574 6.446 -15.827 17.459 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.185 4.185 3 C 0.031 3.969 4 N -0.299 5.299 5 C -0.387 4.387 6 H 0.097 0.903 7 C -0.165 4.165 8 N -0.535 5.535 9 Si 0.694 3.306 10 H -0.215 1.215 11 H -0.224 1.224 12 H -0.186 1.186 13 C -0.011 4.011 14 C 0.279 3.721 15 O -0.388 6.388 16 N -0.368 5.368 17 C -0.028 4.028 18 C -0.032 4.032 19 N -0.347 5.347 20 C 0.302 3.698 21 C -0.235 4.235 22 O -0.429 6.429 23 C -0.027 4.027 24 C -0.027 4.027 25 H 0.065 0.935 26 H 0.064 0.936 27 H 0.070 0.930 28 H 0.067 0.933 29 H 0.085 0.915 30 H 0.070 0.930 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.086 0.914 34 H 0.098 0.902 35 H 0.083 0.917 36 H 0.122 0.878 37 H 0.115 0.885 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.110 0.890 41 H 0.102 0.898 42 H 0.092 0.908 43 H 0.120 0.880 44 H 0.088 0.912 45 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.511 6.404 -15.648 17.269 hybrid contribution 0.524 -0.750 -0.610 1.100 sum -2.987 5.654 -16.258 17.470 Atomic orbital electron populations 1.21723 0.97090 1.00565 1.01071 1.22122 0.93876 1.00472 1.02018 1.20905 0.83175 0.93421 0.99384 1.43782 1.00747 1.83546 1.01829 1.18768 1.07338 1.23812 0.88815 0.90295 1.25520 0.96800 0.97736 0.96454 1.69883 1.09188 1.39447 1.35000 0.87102 0.78252 0.84038 0.81202 1.21451 1.22418 1.18588 1.21404 0.98474 0.90604 0.90592 1.23047 0.75876 0.94497 0.78725 1.90604 1.49747 1.51170 1.47235 1.48513 1.58964 1.05674 1.23604 1.21831 1.00703 0.84891 0.95406 1.22285 0.99920 0.91269 0.89684 1.48133 1.56483 1.07545 1.22497 1.20834 0.76839 0.91775 0.80355 1.21970 1.03777 0.92961 1.04804 1.90707 1.54077 1.51958 1.46117 1.22132 1.01402 0.82388 0.96742 1.22114 0.99553 0.92441 0.88641 0.93539 0.93648 0.92995 0.93268 0.91455 0.92967 0.94429 0.92662 0.91369 0.90173 0.91689 0.87832 0.88525 0.90655 0.88727 0.88994 0.89757 0.90813 0.87972 0.91152 0.88585 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.71 16 2 C -0.15 -2.59 6.24 -26.73 -0.17 -2.76 16 3 C 0.16 3.14 5.67 -4.04 -0.02 3.12 16 4 N -0.58 -13.68 1.54 -174.61 -0.27 -13.94 16 5 C -0.26 -7.23 9.90 -15.06 -0.15 -7.38 16 6 H 0.08 2.45 8.06 -52.49 -0.42 2.03 16 7 C 0.04 1.01 5.30 -17.43 -0.09 0.92 16 8 N -0.89 -27.16 13.97 55.49 0.78 -26.39 16 9 Si 0.86 20.88 25.11 -169.99 -4.27 16.61 16 10 H -0.29 -6.53 6.68 56.52 0.38 -6.15 16 11 H -0.30 -7.36 7.11 56.52 0.40 -6.96 16 12 H -0.26 -6.01 7.11 56.52 0.40 -5.61 16 13 C 0.12 2.49 3.30 -5.19 -0.02 2.47 16 14 C 0.49 9.93 7.77 -10.98 -0.09 9.84 16 15 O -0.51 -12.27 15.84 5.56 0.09 -12.18 16 16 N -0.63 -9.85 2.95 -172.20 -0.51 -10.35 16 17 C 0.10 1.21 6.59 -3.60 -0.02 1.18 16 18 C 0.09 0.86 6.44 -3.60 -0.02 0.83 16 19 N -0.61 -6.68 2.94 -172.19 -0.51 -7.19 16 20 C 0.51 5.84 7.80 -10.98 -0.09 5.76 16 21 C -0.18 -1.22 9.45 36.00 0.34 -0.88 16 22 O -0.55 -8.47 16.52 5.55 0.09 -8.37 16 23 C 0.10 1.11 6.61 -3.35 -0.02 1.09 16 24 C 0.10 1.28 6.53 -3.35 -0.02 1.25 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 30 H 0.05 1.09 8.07 -51.93 -0.42 0.67 16 31 H 0.04 0.69 8.04 -51.93 -0.42 0.27 16 32 H 0.26 7.55 8.31 -40.82 -0.34 7.21 16 33 H 0.07 1.19 7.65 -51.92 -0.40 0.79 16 34 H 0.08 1.79 3.25 -51.93 -0.17 1.62 16 35 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.10 1.44 6.99 -51.93 -0.36 1.08 16 37 H 0.10 0.60 5.45 -51.93 -0.28 0.31 16 38 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 39 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 40 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.08 0.41 6.22 -51.93 -0.32 0.09 16 42 H 0.07 0.80 8.14 -51.93 -0.42 0.37 16 43 H 0.10 1.20 7.02 -51.93 -0.36 0.83 16 44 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 45 H 0.10 1.25 5.91 -51.93 -0.31 0.94 16 LS Contribution 355.79 15.07 5.36 5.36 Total: -1.00 -35.29 355.79 -6.51 -41.80 By element: Atomic # 1 Polarization: 8.20 SS G_CDS: -7.28 Total: 0.93 kcal Atomic # 6 Polarization: 13.74 SS G_CDS: 0.00 Total: 13.73 kcal Atomic # 7 Polarization: -57.37 SS G_CDS: -0.51 Total: -57.88 kcal Atomic # 8 Polarization: -20.74 SS G_CDS: 0.18 Total: -20.56 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.27 Total: 16.61 kcal Total LS contribution 5.36 Total: 5.36 kcal Total: -35.29 -6.51 -41.80 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.688 kcal (2) G-P(sol) polarization free energy of solvation -35.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.795 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.107 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds