Wall clock time and date at job start Tue Mar 31 2020 04:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.46830 * 2 1 4 4 N 1.46496 * 109.47106 * 179.97438 * 3 2 1 5 5 C 1.36938 * 120.00110 * 274.35826 * 4 3 2 6 6 H 1.07995 * 119.99960 * 320.48712 * 5 4 3 7 7 C 1.38817 * 120.00213 * 140.48327 * 5 4 3 8 8 N 1.31621 * 120.00162 * 158.22447 * 7 5 4 9 9 Si 1.86799 * 119.99858 * 338.23415 * 7 5 4 10 10 H 1.48496 * 109.47612 * 95.19605 * 9 7 5 11 11 H 1.48507 * 109.46790 * 215.19461 * 9 7 5 12 12 H 1.48502 * 109.47187 * 335.19216 * 9 7 5 13 13 C 1.46498 * 120.00372 * 94.35642 * 4 3 2 14 14 C 1.50700 * 109.46986 * 89.99587 * 13 4 3 15 15 O 1.21275 * 120.00144 * 0.02562 * 14 13 4 16 16 N 1.34782 * 119.99887 * 180.02562 * 14 13 4 17 17 C 1.46967 * 120.59306 * 180.02562 * 16 14 13 18 18 C 1.53370 * 108.63027 * 235.24712 * 17 16 14 19 19 N 1.46958 * 108.63935 * 310.57742 * 18 17 16 20 20 C 1.34782 * 120.59378 * 235.20934 * 19 18 17 21 21 C 1.50698 * 120.00144 * 4.75039 * 20 19 18 22 22 O 1.21283 * 119.99568 * 184.76018 * 20 19 18 23 23 C 1.46967 * 118.81377 * 55.47558 * 19 18 17 24 24 C 1.46968 * 120.59158 * 0.02562 * 16 14 13 25 25 H 1.08997 * 109.47354 * 60.00226 * 1 2 3 26 26 H 1.09006 * 109.46904 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47221 * 300.00006 * 1 2 3 28 28 H 1.08997 * 109.47221 * 239.99993 * 2 1 3 29 29 H 1.09006 * 109.47171 * 119.99917 * 2 1 3 30 30 H 1.09007 * 109.47332 * 59.99911 * 3 2 1 31 31 H 1.08993 * 109.47340 * 299.99695 * 3 2 1 32 32 H 0.97003 * 120.00097 * 180.02562 * 8 7 5 33 33 H 1.09009 * 109.46960 * 330.00294 * 13 4 3 34 34 H 1.08998 * 109.47641 * 210.00421 * 13 4 3 35 35 H 1.08996 * 109.60754 * 115.50815 * 17 16 14 36 36 H 1.08996 * 109.60514 * 354.99070 * 17 16 14 37 37 H 1.09005 * 109.60744 * 190.82841 * 18 17 16 38 38 H 1.09005 * 109.74924 * 70.40470 * 18 17 16 39 39 H 1.09003 * 109.46698 * 85.30300 * 21 20 19 40 40 H 1.08998 * 109.47158 * 205.30889 * 21 20 19 41 41 H 1.09002 * 109.47246 * 325.31212 * 21 20 19 42 42 H 1.08999 * 109.60480 * 64.26989 * 23 19 18 43 43 H 1.09003 * 109.60861 * 184.78082 * 23 19 18 44 44 H 1.08999 * 109.61024 * 244.49154 * 24 16 14 45 45 H 1.08993 * 109.61099 * 4.84270 * 24 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4426 0.0006 5 6 4.1891 1.3527 1.1834 6 1 3.8339 1.8832 2.0544 7 6 5.3393 0.5796 1.2629 8 7 6.2220 0.8086 2.2120 9 14 5.6345 -0.7857 0.0226 10 1 6.4852 -0.2754 -1.0824 11 1 6.3196 -1.9215 0.6906 12 1 4.3336 -1.2458 -0.5261 13 6 4.2380 1.5388 -1.2641 14 6 4.4892 2.9885 -1.5901 15 8 4.0951 3.8559 -0.8396 16 7 5.1518 3.3212 -2.7156 17 6 5.4044 4.7308 -3.0460 18 6 4.8434 5.0142 -4.4450 19 7 5.3258 3.9739 -5.3641 20 6 5.9877 4.3066 -6.4901 21 6 6.3331 5.7478 -6.7633 22 8 6.3052 3.4460 -7.2835 23 6 5.0684 2.5645 -5.0365 24 6 5.6346 2.2807 -3.6345 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 1.6766 1.9564 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 7.0259 0.2687 2.2673 33 1 3.6492 1.0840 -2.0608 34 1 5.1904 1.0166 -1.1727 35 1 6.4774 4.9221 -3.0365 36 1 4.9094 5.3717 -2.3166 37 1 5.1866 5.9912 -4.7857 38 1 3.7539 4.9992 -4.4150 39 1 7.2718 5.9965 -6.2682 40 1 6.4376 5.8990 -7.8376 41 1 5.5396 6.3902 -6.3814 42 1 3.9947 2.3772 -5.0454 43 1 5.5602 1.9232 -5.7680 44 1 6.7240 2.2980 -3.6668 45 1 5.2942 1.3036 -3.2921 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000071910875.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:08:11 Heat of formation + Delta-G solvation = -57.817241 kcal Electronic energy + Delta-G solvation = -25463.482794 eV Core-core repulsion = 21902.344911 eV Total energy + Delta-G solvation = -3561.137883 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.51903 -40.41138 -38.28331 -37.48088 -35.18402 -34.59635 -33.28364 -32.71720 -30.97202 -29.26461 -27.96203 -27.54885 -24.89057 -24.09285 -23.48454 -21.84820 -21.14116 -19.73065 -18.81776 -18.47175 -17.59928 -17.24092 -17.13505 -16.68167 -16.58359 -16.27104 -15.88828 -15.59726 -15.04900 -14.90456 -14.63407 -14.54633 -14.48554 -14.10301 -13.97317 -13.74752 -13.31689 -13.12472 -13.04883 -12.81945 -12.65891 -12.51489 -12.39652 -12.37019 -12.26009 -12.17678 -12.05456 -11.59223 -11.37301 -10.94558 -10.87391 -10.60173 -10.30650 -9.37427 -8.79309 -8.21275 -5.63704 1.24142 1.41006 1.51567 1.55479 1.73220 1.79153 2.18823 2.39420 3.00223 3.31276 3.51885 3.72279 3.81020 3.88160 4.08950 4.16494 4.23020 4.27605 4.31207 4.36454 4.38159 4.47411 4.49770 4.61529 4.63613 4.68598 4.72096 4.76415 4.77071 4.93619 4.93656 5.10653 5.17859 5.26978 5.35147 5.42420 5.54233 5.59817 5.91102 6.17906 6.28606 6.39725 6.90949 7.09195 7.31192 7.58016 7.97782 8.98943 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.016886 B = 0.004539 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1657.786166 B = 6166.862223 C = 6600.703337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.137 4.137 3 C 0.155 3.845 4 N -0.593 5.593 5 C -0.254 4.254 6 H 0.024 0.976 7 C -0.022 4.022 8 N -0.951 5.951 9 Si 0.936 3.064 10 H -0.262 1.262 11 H -0.307 1.307 12 H -0.238 1.238 13 C 0.115 3.885 14 C 0.490 3.510 15 O -0.564 6.564 16 N -0.622 5.622 17 C 0.090 3.910 18 C 0.103 3.897 19 N -0.614 5.614 20 C 0.508 3.492 21 C -0.170 4.170 22 O -0.596 6.596 23 C 0.102 3.898 24 C 0.094 3.906 25 H 0.065 0.935 26 H 0.062 0.938 27 H 0.050 0.950 28 H 0.058 0.942 29 H 0.038 0.962 30 H 0.030 0.970 31 H 0.059 0.941 32 H 0.263 0.737 33 H 0.110 0.890 34 H 0.068 0.932 35 H 0.075 0.925 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.079 0.921 39 H 0.110 0.890 40 H 0.095 0.905 41 H 0.111 0.889 42 H 0.084 0.916 43 H 0.100 0.900 44 H 0.072 0.928 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.302 6.446 -19.413 20.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.177 4.177 3 C 0.030 3.970 4 N -0.314 5.314 5 C -0.384 4.384 6 H 0.041 0.959 7 C -0.218 4.218 8 N -0.594 5.594 9 Si 0.762 3.238 10 H -0.188 1.188 11 H -0.235 1.235 12 H -0.161 1.161 13 C -0.014 4.014 14 C 0.277 3.723 15 O -0.441 6.441 16 N -0.359 5.359 17 C -0.033 4.033 18 C -0.020 4.020 19 N -0.347 5.347 20 C 0.299 3.701 21 C -0.229 4.229 22 O -0.478 6.478 23 C -0.022 4.022 24 C -0.030 4.030 25 H 0.084 0.916 26 H 0.081 0.919 27 H 0.069 0.931 28 H 0.076 0.924 29 H 0.057 0.943 30 H 0.049 0.951 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.128 0.872 34 H 0.086 0.914 35 H 0.093 0.907 36 H 0.106 0.894 37 H 0.154 0.846 38 H 0.097 0.903 39 H 0.128 0.872 40 H 0.113 0.887 41 H 0.129 0.871 42 H 0.102 0.898 43 H 0.118 0.882 44 H 0.091 0.909 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -4.258 6.428 -19.307 20.790 hybrid contribution 0.749 -0.618 0.515 1.099 sum -3.509 5.810 -18.792 19.980 Atomic orbital electron populations 1.21659 0.93996 1.02037 1.02000 1.21990 0.96553 0.98121 1.01005 1.21005 0.81399 0.95167 0.99405 1.43841 1.02032 1.84153 1.01354 1.18495 1.07584 1.22907 0.89384 0.95852 1.26202 0.96338 1.00014 0.99296 1.70042 1.10149 1.40940 1.38273 0.85961 0.79386 0.79483 0.78991 1.18819 1.23496 1.16093 1.21487 0.98287 0.91356 0.90300 1.22721 0.76240 0.93813 0.79513 1.90592 1.52221 1.52120 1.49193 1.48410 1.57160 1.07800 1.22484 1.22051 1.01431 0.82640 0.97177 1.22319 1.00013 0.92546 0.87109 1.48254 1.56230 1.07560 1.22676 1.21630 0.75677 0.93185 0.79585 1.22017 1.05355 0.90021 1.05490 1.90691 1.55818 1.53666 1.47584 1.22037 1.01848 0.83135 0.95191 1.22293 0.99763 0.91922 0.89018 0.91614 0.91896 0.93128 0.92373 0.94265 0.95132 0.92215 0.92772 0.87237 0.91403 0.90711 0.89362 0.84606 0.90251 0.87192 0.88664 0.87094 0.89777 0.88188 0.90928 0.88146 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.58 9.91 71.98 0.71 -2.86 16 2 C -0.14 -4.69 6.24 30.59 0.19 -4.50 16 3 C 0.15 6.16 5.67 86.38 0.49 6.65 16 4 N -0.59 -28.13 1.54 -706.35 -1.08 -29.21 16 5 C -0.25 -14.83 9.90 84.03 0.83 -14.00 16 6 H 0.02 1.59 8.06 -2.91 -0.02 1.57 16 7 C -0.02 -1.30 5.30 84.86 0.45 -0.86 16 8 N -0.95 -60.31 13.97 21.65 0.30 -60.01 16 9 Si 0.94 43.24 25.11 68.60 1.72 44.96 16 10 H -0.26 -10.94 6.68 99.48 0.66 -10.28 16 11 H -0.31 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.24 -9.99 7.11 99.48 0.71 -9.28 16 13 C 0.12 4.59 3.30 85.63 0.28 4.88 16 14 C 0.49 19.40 7.77 87.66 0.68 20.08 16 15 O -0.56 -27.33 15.84 -3.01 -0.05 -27.38 16 16 N -0.62 -18.32 2.95 -817.09 -2.41 -20.73 16 17 C 0.09 2.08 6.59 86.41 0.57 2.65 16 18 C 0.10 1.54 6.44 86.42 0.56 2.10 16 19 N -0.61 -11.40 2.94 -817.07 -2.40 -13.81 16 20 C 0.51 10.07 7.80 87.66 0.68 10.75 16 21 C -0.17 -1.69 9.45 71.24 0.67 -1.01 16 22 O -0.60 -17.27 16.52 -3.04 -0.05 -17.32 16 23 C 0.10 2.04 6.61 86.58 0.57 2.61 16 24 C 0.09 2.22 6.53 86.58 0.56 2.78 16 25 H 0.06 1.45 8.14 -2.39 -0.02 1.43 16 26 H 0.06 1.42 8.14 -2.38 -0.02 1.40 16 27 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.04 1.54 8.14 -2.38 -0.02 1.52 16 30 H 0.03 1.32 8.07 -2.38 -0.02 1.30 16 31 H 0.06 2.09 8.04 -2.39 -0.02 2.07 16 32 H 0.26 15.70 8.31 -92.71 -0.77 14.93 16 33 H 0.11 3.42 7.65 -2.38 -0.02 3.40 16 34 H 0.07 2.89 3.25 -2.39 -0.01 2.88 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.09 2.37 6.99 -2.39 -0.02 2.36 16 37 H 0.14 1.00 5.45 -2.38 -0.01 0.98 16 38 H 0.08 1.21 8.14 -2.38 -0.02 1.19 16 39 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 40 H 0.09 0.94 8.14 -2.39 -0.02 0.92 16 41 H 0.11 0.50 6.22 -2.39 -0.01 0.48 16 42 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 43 H 0.10 2.12 7.02 -2.39 -0.02 2.10 16 44 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.10 2.29 5.91 -2.39 -0.01 2.28 16 Total: -1.00 -82.34 355.79 4.22 -78.12 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.93 Total: 16.10 kcal Atomic # 6 Polarization: 22.02 SS G_CDS: 7.26 Total: 29.28 kcal Atomic # 7 Polarization: -118.16 SS G_CDS: -5.59 Total: -123.76 kcal Atomic # 8 Polarization: -44.60 SS G_CDS: -0.10 Total: -44.70 kcal Atomic # 14 Polarization: 43.24 SS G_CDS: 1.72 Total: 44.96 kcal Total: -82.34 4.22 -78.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000071910875.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.299 kcal (2) G-P(sol) polarization free energy of solvation -82.338 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.116 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds