Wall clock time and date at job start Tue Mar 31 2020 03:12:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86805 * 120.00207 * 2 1 4 4 H 1.48498 * 109.46846 * 0.02562 * 3 2 1 5 5 H 1.48495 * 109.46740 * 120.00546 * 3 2 1 6 6 H 1.48495 * 109.47234 * 240.00689 * 3 2 1 7 7 C 1.37885 * 120.00056 * 179.73374 * 2 1 3 8 8 H 1.08002 * 120.00217 * 179.97438 * 7 2 1 9 9 C 1.50699 * 119.99715 * 359.97438 * 7 2 1 10 10 N 1.46896 * 109.47051 * 180.02562 * 9 7 2 11 11 C 1.46951 * 111.00253 * 293.79964 * 10 9 7 12 12 C 1.53050 * 109.36803 * 176.80975 * 11 10 9 13 13 N 1.46960 * 109.36370 * 58.40069 * 12 11 10 14 14 C 1.46896 * 111.00115 * 176.81153 * 13 12 11 15 15 C 1.50693 * 109.47242 * 190.15722 * 14 13 12 16 16 O 1.21285 * 120.00011 * 6.21248 * 15 14 13 17 17 N 1.34775 * 120.00312 * 186.21077 * 15 14 13 18 18 C 1.47156 * 120.98047 * 359.71620 * 17 15 14 19 19 C 1.53718 * 108.16204 * 129.43570 * 18 17 15 20 20 O 1.42957 * 109.14627 * 52.53895 * 19 18 17 21 21 C 1.42960 * 114.16849 * 297.28662 * 20 19 18 22 22 C 1.47155 * 120.98606 * 180.02562 * 17 15 14 23 23 C 1.46951 * 110.87942 * 300.68272 * 13 12 11 24 24 C 1.46960 * 111.00115 * 169.99873 * 10 9 7 25 25 H 0.96993 * 119.99876 * 180.02562 * 1 2 3 26 26 H 1.08996 * 109.47059 * 300.00335 * 9 7 2 27 27 H 1.09002 * 109.47284 * 60.00216 * 9 7 2 28 28 H 1.08998 * 109.48851 * 296.78223 * 11 10 9 29 29 H 1.09000 * 109.48829 * 56.84534 * 11 10 9 30 30 H 1.09000 * 109.49128 * 298.43855 * 12 11 10 31 31 H 1.08997 * 109.49185 * 178.36847 * 12 11 10 32 32 H 1.09005 * 109.47172 * 310.15821 * 14 13 12 33 33 H 1.09002 * 109.47108 * 70.15907 * 14 13 12 34 34 H 1.09009 * 109.68444 * 249.21217 * 18 17 15 35 35 H 1.08997 * 109.68166 * 9.76552 * 18 17 15 36 36 H 1.09000 * 109.65462 * 292.56989 * 19 18 17 37 37 H 1.09000 * 109.48109 * 172.39879 * 19 18 17 38 38 H 1.09001 * 109.51516 * 302.66430 * 21 20 19 39 39 H 1.08997 * 109.55951 * 182.52880 * 21 20 19 40 40 H 1.09001 * 109.67845 * 350.22867 * 22 17 15 41 41 H 1.09002 * 109.68513 * 110.74998 * 22 17 15 42 42 H 1.08998 * 109.48851 * 299.34737 * 23 13 12 43 43 H 1.09000 * 109.50766 * 179.29598 * 23 13 12 44 44 H 1.08997 * 109.48834 * 303.15840 * 24 10 9 45 45 H 1.09000 * 109.48402 * 63.22187 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7464 0.0006 5 1 3.1030 1.6962 1.2124 6 1 3.1028 1.6965 -1.2125 7 6 2.0046 -1.1941 0.0055 8 1 3.0846 -1.1941 0.0051 9 6 1.2510 -2.4991 0.0122 10 7 2.2056 -3.6157 0.0179 11 6 2.9686 -3.6627 -1.2371 12 6 4.0041 -4.7870 -1.1598 13 7 3.3194 -6.0641 -0.9150 14 6 4.2739 -7.1806 -0.9093 15 6 3.5204 -8.4857 -0.9065 16 8 2.3132 -8.4891 -1.0227 17 7 4.1880 -9.6490 -0.7750 18 6 5.6531 -9.6704 -0.6389 19 6 6.0085 -10.5359 0.5808 20 8 5.3642 -11.8061 0.4581 21 6 3.9361 -11.7399 0.4512 22 6 3.4742 -10.9358 -0.7700 23 6 2.5563 -6.0171 0.3400 24 6 1.5208 -4.8928 0.2627 25 1 -0.4849 -0.8400 0.0004 26 1 0.6247 -2.5525 0.9026 27 1 0.6240 -2.5612 -0.8773 28 1 2.2895 -3.8503 -2.0688 29 1 3.4766 -2.7104 -1.3897 30 1 4.6997 -4.5854 -0.3451 31 1 4.5517 -4.8425 -2.1006 32 1 4.9024 -7.1259 -1.7982 33 1 4.8987 -7.1200 -0.0182 34 1 6.0992 -10.0968 -1.5375 35 1 6.0229 -8.6558 -0.4908 36 1 5.6698 -10.0423 1.4918 37 1 7.0883 -10.6779 0.6236 38 1 3.5899 -11.2506 1.3616 39 1 3.5243 -12.7478 0.4003 40 1 2.4002 -10.7595 -0.7088 41 1 3.7043 -11.4869 -1.6818 42 1 3.2354 -5.8295 1.1717 43 1 2.0484 -6.9693 0.4931 44 1 0.9732 -4.8373 1.2035 45 1 0.8253 -5.0943 -0.5520 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000072672548.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:12:53 Heat of formation + Delta-G solvation = -81.839493 kcal Electronic energy + Delta-G solvation = -24801.723710 eV Core-core repulsion = 21239.544144 eV Total energy + Delta-G solvation = -3562.179566 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -41.52850 -40.20048 -39.15034 -36.72164 -35.83470 -34.74490 -32.58612 -31.95663 -30.71234 -29.04057 -27.64699 -25.89466 -24.92282 -24.51288 -23.68928 -22.87692 -20.81972 -20.21733 -18.95727 -18.43963 -17.64342 -17.22200 -16.92229 -16.72322 -16.26249 -16.06401 -16.00724 -15.75048 -15.64701 -15.41150 -15.35223 -15.08882 -14.42087 -14.29582 -13.98906 -13.50355 -13.47205 -13.18576 -12.96986 -12.81517 -12.74942 -12.46815 -12.37146 -12.29825 -12.05364 -11.92836 -11.74179 -11.68673 -11.23151 -10.89612 -10.72788 -10.59087 -9.65619 -9.39386 -9.19455 -8.70507 -6.41389 1.52270 1.53785 1.63179 1.72021 1.82404 2.56256 2.80676 2.85510 3.08765 3.16529 3.42274 3.72308 3.84369 3.96091 4.06181 4.07663 4.09138 4.15012 4.23083 4.25325 4.28203 4.40300 4.43557 4.48489 4.54056 4.63269 4.72058 4.74012 4.77826 4.82337 4.84431 4.88009 4.92043 5.02864 5.06188 5.34933 5.70874 5.80780 5.92877 5.98177 6.08228 6.27785 6.32472 6.36996 6.57438 7.10382 7.40620 8.68246 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.039540 B = 0.002742 C = 0.002663 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 707.980983 B =10207.661714 C =10511.592426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C -0.040 4.040 3 Si 1.125 2.875 4 H -0.285 1.285 5 H -0.267 1.267 6 H -0.265 1.265 7 C -0.597 4.597 8 H 0.061 0.939 9 C 0.194 3.806 10 N -0.535 5.535 11 C 0.066 3.934 12 C 0.074 3.926 13 N -0.544 5.544 14 C 0.042 3.958 15 C 0.513 3.487 16 O -0.565 6.565 17 N -0.620 5.620 18 C 0.068 3.932 19 C 0.043 3.957 20 O -0.394 6.394 21 C 0.054 3.946 22 C 0.075 3.925 23 C 0.078 3.922 24 C 0.057 3.943 25 H 0.251 0.749 26 H -0.004 1.004 27 H -0.049 1.049 28 H 0.009 0.991 29 H 0.076 0.924 30 H 0.052 0.948 31 H 0.107 0.893 32 H 0.133 0.867 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.116 0.884 36 H 0.054 0.946 37 H 0.132 0.868 38 H 0.050 0.950 39 H 0.124 0.876 40 H 0.083 0.917 41 H 0.083 0.917 42 H 0.044 0.956 43 H 0.081 0.919 44 H 0.067 0.933 45 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.331 -23.918 -0.610 29.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.576 5.576 2 C -0.237 4.237 3 Si 0.945 3.055 4 H -0.211 1.211 5 H -0.193 1.193 6 H -0.190 1.190 7 C -0.635 4.635 8 H 0.079 0.921 9 C 0.067 3.933 10 N -0.260 5.260 11 C -0.062 4.062 12 C -0.054 4.054 13 N -0.269 5.269 14 C -0.088 4.088 15 C 0.302 3.698 16 O -0.443 6.443 17 N -0.355 5.355 18 C -0.054 4.054 19 C -0.034 4.034 20 O -0.313 6.313 21 C -0.024 4.024 22 C -0.048 4.048 23 C -0.050 4.050 24 C -0.072 4.072 25 H 0.060 0.940 26 H 0.014 0.986 27 H -0.032 1.032 28 H 0.027 0.973 29 H 0.094 0.906 30 H 0.070 0.930 31 H 0.125 0.875 32 H 0.151 0.849 33 H 0.106 0.894 34 H 0.111 0.889 35 H 0.134 0.866 36 H 0.073 0.927 37 H 0.150 0.850 38 H 0.069 0.931 39 H 0.142 0.858 40 H 0.101 0.899 41 H 0.102 0.898 42 H 0.062 0.938 43 H 0.099 0.901 44 H 0.086 0.914 45 H 0.029 0.971 Dipole moment (debyes) X Y Z Total from point charges 16.603 -22.472 -0.684 27.948 hybrid contribution -1.016 -1.413 -0.019 1.741 sum 15.587 -23.885 -0.703 28.530 Atomic orbital electron populations 1.70924 1.08115 1.29532 1.49062 1.27559 0.96475 1.06972 0.92669 0.82852 0.73990 0.70484 0.78196 1.21084 1.19251 1.19036 1.22256 0.95007 0.91782 1.54463 0.92112 1.19525 0.90840 0.90618 0.92300 1.62196 1.26661 1.02376 1.34718 1.22036 0.95816 0.99064 0.89286 1.22158 0.94450 0.86348 1.02405 1.61731 1.26323 1.03447 1.35430 1.22082 0.93875 0.87415 1.05448 1.20999 0.87643 0.85946 0.75179 1.90699 1.16233 1.87280 1.50116 1.48295 1.08799 1.05532 1.72916 1.22832 0.78300 1.03722 1.00525 1.23261 0.99931 0.83905 0.96337 1.87953 1.19029 1.29931 1.94382 1.23007 0.81221 1.02114 0.96019 1.22321 0.98376 0.83844 1.00211 1.21996 0.95459 0.97553 0.90031 1.22105 0.95837 0.89783 0.99432 0.93983 0.98551 1.03194 0.97285 0.90567 0.92973 0.87519 0.84895 0.89372 0.88895 0.86572 0.92718 0.84994 0.93148 0.85767 0.89888 0.89836 0.93784 0.90127 0.91439 0.97069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.84 13.65 21.45 0.29 -59.55 16 2 C -0.04 -2.35 5.46 84.66 0.46 -1.89 16 3 Si 1.12 50.61 29.90 68.60 2.05 52.66 16 4 H -0.29 -12.88 7.11 99.48 0.71 -12.18 16 5 H -0.27 -11.12 7.11 99.48 0.71 -10.41 16 6 H -0.27 -10.91 7.11 99.48 0.71 -10.21 16 7 C -0.60 -34.91 8.47 25.60 0.22 -34.69 16 8 H 0.06 3.44 7.13 -2.91 -0.02 3.42 16 9 C 0.19 10.91 4.03 85.56 0.34 11.25 16 10 N -0.53 -24.80 4.70 -900.31 -4.23 -29.04 16 11 C 0.07 2.70 5.43 86.31 0.47 3.16 16 12 C 0.07 2.13 5.61 86.31 0.48 2.61 16 13 N -0.54 -15.97 4.40 -900.31 -3.96 -19.94 16 14 C 0.04 0.81 3.94 85.56 0.34 1.15 16 15 C 0.51 12.04 7.27 87.66 0.64 12.68 16 16 O -0.57 -18.95 14.15 -3.05 -0.04 -18.99 16 17 N -0.62 -10.35 3.01 -816.42 -2.46 -12.81 16 18 C 0.07 0.60 6.57 86.50 0.57 1.17 16 19 C 0.04 0.38 7.00 72.22 0.51 0.88 16 20 O -0.39 -5.45 10.74 -148.98 -1.60 -7.05 16 21 C 0.05 0.68 6.99 72.10 0.50 1.19 16 22 C 0.08 1.20 6.64 86.37 0.57 1.77 16 23 C 0.08 2.56 5.26 86.31 0.45 3.01 16 24 C 0.06 2.36 5.61 86.31 0.48 2.84 16 25 H 0.25 16.40 7.22 -92.71 -0.67 15.73 16 26 H 0.00 -0.21 7.90 -2.39 -0.02 -0.23 16 27 H -0.05 -3.03 7.98 -2.39 -0.02 -3.05 16 28 H 0.01 0.39 8.14 -2.39 -0.02 0.37 16 29 H 0.08 3.25 6.79 -2.39 -0.02 3.24 16 30 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 31 H 0.11 2.40 8.07 -2.39 -0.02 2.38 16 32 H 0.13 1.82 8.02 -2.38 -0.02 1.80 16 33 H 0.09 1.27 7.32 -2.39 -0.02 1.26 16 34 H 0.09 0.64 8.14 -2.38 -0.02 0.62 16 35 H 0.12 0.55 5.96 -2.39 -0.01 0.53 16 36 H 0.05 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.13 0.50 8.14 -2.39 -0.02 0.48 16 38 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 39 H 0.12 1.08 8.14 -2.39 -0.02 1.07 16 40 H 0.08 1.66 7.08 -2.39 -0.02 1.64 16 41 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 42 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.08 2.71 6.09 -2.39 -0.01 2.70 16 44 H 0.07 2.75 8.07 -2.39 -0.02 2.73 16 45 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 Total: -1.00 -79.29 349.22 -2.85 -82.14 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: 1.06 Total: 7.44 kcal Atomic # 6 Polarization: -0.91 SS G_CDS: 6.04 Total: 5.13 kcal Atomic # 7 Polarization: -110.97 SS G_CDS: -10.36 Total: -121.33 kcal Atomic # 8 Polarization: -24.40 SS G_CDS: -1.64 Total: -26.05 kcal Atomic # 14 Polarization: 50.61 SS G_CDS: 2.05 Total: 52.66 kcal Total: -79.29 -2.85 -82.14 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000072672548.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 0.305 kcal (2) G-P(sol) polarization free energy of solvation -79.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.986 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.144 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds