Wall clock time and date at job start Tue Mar 31 2020 03:51:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47301 * 2 1 4 4 H 1.09001 * 109.46873 * 54.99641 * 3 2 1 5 5 C 1.52998 * 109.47132 * 294.99839 * 3 2 1 6 6 C 1.53001 * 109.47453 * 174.99588 * 3 2 1 7 7 H 1.08993 * 109.47065 * 179.97438 * 6 3 2 8 8 N 1.46509 * 109.46641 * 60.00186 * 6 3 2 9 9 C 1.34767 * 119.99865 * 84.99959 * 8 6 3 10 10 O 1.21592 * 120.00433 * 359.97438 * 9 8 6 11 11 N 1.34778 * 119.99872 * 179.97438 * 9 8 6 12 12 C 1.47025 * 125.64743 * 359.69147 * 11 9 8 13 13 C 1.54316 * 107.27421 * 180.96905 * 12 11 9 14 14 C 1.55164 * 102.86559 * 22.52622 * 13 12 11 15 15 C 1.47431 * 125.64907 * 180.02562 * 11 9 8 16 16 C 1.50698 * 109.47207 * 300.00575 * 6 3 2 17 17 O 1.21293 * 120.00006 * 119.99875 * 16 6 3 18 18 N 1.34777 * 119.99538 * 299.99218 * 16 6 3 19 19 C 1.37104 * 119.99773 * 179.72591 * 18 16 6 20 20 H 1.08002 * 119.99671 * 0.27660 * 19 18 16 21 21 C 1.38950 * 120.00030 * 180.27703 * 19 18 16 22 22 N 1.31414 * 119.99926 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 119.99969 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.47459 * 59.99812 * 23 21 19 25 25 H 1.48502 * 109.47317 * 180.02562 * 23 21 19 26 26 H 1.48506 * 109.47211 * 300.00250 * 23 21 19 27 27 H 1.09006 * 109.47152 * 300.00292 * 1 2 3 28 28 H 1.09004 * 109.47093 * 59.99805 * 1 2 3 29 29 H 1.09001 * 109.47243 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47402 * 240.00365 * 2 1 3 31 31 H 1.08998 * 109.46879 * 119.99798 * 2 1 3 32 32 H 1.09009 * 109.46771 * 60.00079 * 5 3 2 33 33 H 1.08998 * 109.47370 * 179.97438 * 5 3 2 34 34 H 1.08994 * 109.47484 * 300.00229 * 5 3 2 35 35 H 0.97001 * 119.99834 * 264.99973 * 8 6 3 36 36 H 1.08994 * 109.88127 * 300.51028 * 12 11 9 37 37 H 1.08997 * 109.87907 * 61.67989 * 12 11 9 38 38 H 1.08999 * 110.92553 * 264.11088 * 13 12 11 39 39 H 1.08996 * 110.59298 * 140.78761 * 13 12 11 40 40 H 1.09000 * 111.00318 * 206.23106 * 14 13 12 41 41 H 1.08999 * 110.99789 * 82.37621 * 14 13 12 42 42 H 1.08997 * 110.36444 * 274.67202 * 15 11 9 43 43 H 1.08999 * 110.36693 * 36.88800 * 15 11 9 44 44 H 0.97001 * 120.00485 * 0.02562 * 18 16 6 45 45 H 0.96999 * 119.99863 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 1.6353 2.1265 -1.3073 6 6 3.5649 1.4444 0.1258 7 1 3.9282 2.4720 0.1254 8 7 4.1490 0.7199 -1.0057 9 6 4.3735 1.3583 -2.1711 10 8 4.0908 2.5356 -2.2837 11 7 4.9113 0.6920 -3.2118 12 6 5.3047 -0.7247 -3.2111 13 6 5.8910 -1.0382 -4.6037 14 6 6.3236 0.3599 -5.1191 15 6 5.2091 1.2646 -4.5373 16 6 3.9635 0.7706 1.4135 17 8 4.6664 -0.2176 1.3885 18 7 3.5389 1.2661 2.5928 19 6 3.8970 0.6498 3.7640 20 1 4.5228 -0.2301 3.7418 21 6 3.4546 1.1573 4.9795 22 7 2.6926 2.2276 5.0064 23 14 3.9429 0.3180 6.5753 24 1 5.4224 0.3198 6.7029 25 1 3.3458 1.0488 7.7219 26 1 3.4483 -1.0822 6.5697 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.5489 2.1253 -1.3969 33 1 1.9983 3.1543 -1.3072 34 1 2.0699 1.5875 -2.1491 35 1 4.3742 -0.2194 -0.9160 36 1 6.0569 -0.9001 -2.4421 37 1 4.4319 -1.3516 -3.0288 38 1 5.1335 -1.4723 -5.2562 39 1 6.7522 -1.7006 -4.5168 40 1 6.3239 0.3918 -6.2087 41 1 7.2996 0.6380 -4.7214 42 1 4.3239 1.2315 -5.1724 43 1 5.5647 2.2900 -4.4364 44 1 2.9765 2.0561 2.6127 45 1 2.3841 2.5821 5.8550 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000134738036.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 03:51:23 Heat of formation + Delta-G solvation = -77.600375 kcal Electronic energy + Delta-G solvation = -25547.201455 eV Core-core repulsion = 21985.205711 eV Total energy + Delta-G solvation = -3561.995744 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.37429 -38.80271 -37.32205 -35.80072 -34.15821 -33.23234 -31.53292 -31.26045 -29.44844 -28.93872 -27.18701 -24.66516 -23.75653 -22.90055 -21.32669 -20.30563 -19.64777 -18.85436 -18.20453 -17.79975 -16.61296 -15.86179 -15.70486 -14.99566 -14.83950 -14.36220 -14.19144 -14.09891 -13.79008 -13.65706 -13.33123 -13.07826 -12.91742 -12.66897 -12.33126 -12.05901 -11.82489 -11.59003 -11.53897 -11.48586 -11.38415 -11.15059 -11.08733 -10.95250 -10.72798 -10.48559 -10.28558 -10.20654 -10.18166 -9.82027 -9.56768 -8.80831 -8.50436 -8.25093 -8.03839 -6.46527 -3.88066 2.76805 3.16355 3.23663 3.27526 3.46284 3.81205 4.08044 4.20576 4.42642 4.55205 4.72473 4.87320 5.12184 5.14681 5.20773 5.22374 5.35526 5.46273 5.49507 5.52451 5.65740 5.70284 5.79120 5.81576 5.90051 5.93816 5.96667 5.97037 6.13372 6.20251 6.31022 6.31831 6.40533 6.48727 6.53683 6.71777 6.84153 6.94760 7.26985 7.50107 7.97866 8.26292 8.51702 8.88911 9.10096 9.45956 9.94526 10.70372 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.019459 B = 0.004057 C = 0.003724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1438.573548 B = 6900.758198 C = 7517.903923 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.115 4.115 3 C -0.097 4.097 4 H 0.083 0.917 5 C -0.132 4.132 6 C 0.157 3.843 7 H 0.098 0.902 8 N -0.713 5.713 9 C 0.724 3.276 10 O -0.590 6.590 11 N -0.641 5.641 12 C 0.097 3.903 13 C -0.129 4.129 14 C -0.135 4.135 15 C 0.127 3.873 16 C 0.437 3.563 17 O -0.596 6.596 18 N -0.549 5.549 19 C -0.303 4.303 20 H 0.104 0.896 21 C 0.026 3.974 22 N -0.895 5.895 23 Si 0.931 3.069 24 H -0.273 1.273 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.055 0.945 28 H 0.051 0.949 29 H 0.048 0.952 30 H 0.055 0.945 31 H 0.069 0.931 32 H 0.044 0.956 33 H 0.060 0.940 34 H 0.051 0.949 35 H 0.403 0.597 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.081 0.919 40 H 0.082 0.918 41 H 0.075 0.925 42 H 0.062 0.938 43 H 0.077 0.923 44 H 0.395 0.605 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.716 -3.972 -17.076 17.546 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.153 4.153 3 C -0.117 4.117 4 H 0.101 0.899 5 C -0.189 4.189 6 C 0.048 3.952 7 H 0.116 0.884 8 N -0.368 5.368 9 C 0.426 3.574 10 O -0.469 6.469 11 N -0.380 5.380 12 C -0.026 4.026 13 C -0.167 4.167 14 C -0.173 4.173 15 C 0.003 3.997 16 C 0.223 3.777 17 O -0.482 6.482 18 N -0.183 5.183 19 C -0.433 4.433 20 H 0.121 0.879 21 C -0.176 4.176 22 N -0.536 5.536 23 Si 0.758 3.242 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.199 1.199 27 H 0.074 0.926 28 H 0.070 0.930 29 H 0.067 0.933 30 H 0.073 0.927 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.080 0.920 34 H 0.070 0.930 35 H 0.239 0.761 36 H 0.087 0.913 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.099 0.901 40 H 0.101 0.899 41 H 0.094 0.906 42 H 0.080 0.920 43 H 0.095 0.905 44 H 0.229 0.771 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.841 -3.603 -16.881 17.281 hybrid contribution 0.004 -0.410 0.977 1.060 sum 0.845 -4.013 -15.903 16.424 Atomic orbital electron populations 1.21786 0.96211 1.00996 1.01607 1.21500 0.95458 0.96201 1.02148 1.21563 0.93752 0.97036 0.99380 0.89925 1.21848 0.99488 1.01029 0.96543 1.20631 0.92955 0.96790 0.84833 0.88433 1.44744 1.66944 1.14690 1.10421 1.15313 0.78137 0.84412 0.79539 1.90907 1.58943 1.14231 1.82803 1.47535 1.67035 1.11050 1.12421 1.21996 0.99660 0.82619 0.98366 1.22594 1.01138 0.97470 0.95478 1.22803 0.98831 0.94838 1.00818 1.21994 0.97143 0.98080 0.82467 1.19713 0.85886 0.87437 0.84699 1.90493 1.42482 1.28453 1.86809 1.41789 1.44804 1.27335 1.04421 1.19657 1.29885 1.11265 0.82475 0.87867 1.25282 0.96422 0.96265 0.99661 1.69607 1.34251 1.21834 1.27874 0.85912 0.78918 0.79071 0.80289 1.19859 1.20904 1.19852 0.92576 0.93004 0.93325 0.92663 0.91219 0.93656 0.92047 0.93018 0.76054 0.91343 0.91686 0.90587 0.90068 0.89910 0.90583 0.91988 0.90493 0.77143 0.91635 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.67 37.16 0.36 -1.76 16 2 C -0.12 -1.90 5.02 -26.73 -0.13 -2.04 16 3 C -0.10 -1.66 2.17 -90.62 -0.20 -1.86 16 4 H 0.08 1.46 7.56 -51.93 -0.39 1.06 16 5 C -0.13 -2.11 7.47 37.16 0.28 -1.84 16 6 C 0.16 3.03 2.42 -69.08 -0.17 2.86 16 7 H 0.10 1.97 7.57 -51.93 -0.39 1.58 16 8 N -0.71 -12.51 4.13 -59.81 -0.25 -12.75 16 9 C 0.72 12.40 6.84 -86.93 -0.59 11.80 16 10 O -0.59 -11.61 13.71 5.28 0.07 -11.54 16 11 N -0.64 -8.65 3.33 -176.26 -0.59 -9.24 16 12 C 0.10 1.03 6.14 -3.07 -0.02 1.01 16 13 C -0.13 -0.96 6.95 -24.90 -0.17 -1.14 16 14 C -0.13 -1.04 7.08 -24.59 -0.17 -1.21 16 15 C 0.13 1.37 6.91 -2.54 -0.02 1.36 16 16 C 0.44 10.15 5.83 -10.99 -0.06 10.08 16 17 O -0.60 -15.38 15.41 5.55 0.09 -15.30 16 18 N -0.55 -13.65 5.18 -10.96 -0.06 -13.70 16 19 C -0.30 -8.25 9.68 -14.93 -0.14 -8.40 16 20 H 0.10 2.93 7.16 -52.49 -0.38 2.55 16 21 C 0.03 0.69 5.50 -17.47 -0.10 0.60 16 22 N -0.90 -23.95 13.05 55.50 0.72 -23.22 16 23 Si 0.93 20.68 29.55 -169.99 -5.02 15.66 16 24 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 25 H -0.28 -6.17 7.11 56.52 0.40 -5.77 16 26 H -0.27 -6.01 7.11 56.52 0.40 -5.61 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.05 0.68 6.57 -51.93 -0.34 0.33 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.05 0.87 7.76 -51.93 -0.40 0.47 16 31 H 0.07 1.34 7.05 -51.93 -0.37 0.98 16 32 H 0.04 0.65 6.57 -51.92 -0.34 0.31 16 33 H 0.06 1.05 7.53 -51.93 -0.39 0.66 16 34 H 0.05 0.87 5.77 -51.93 -0.30 0.57 16 35 H 0.40 6.97 6.78 -40.82 -0.28 6.70 16 36 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 38 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 39 H 0.08 0.51 8.14 -51.93 -0.42 0.09 16 40 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 41 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.92 8.03 -51.93 -0.42 0.50 16 44 H 0.39 9.56 7.32 -40.82 -0.30 9.26 16 45 H 0.27 6.95 8.31 -40.82 -0.34 6.61 16 LS Contribution 354.62 15.07 5.34 5.34 Total: -1.00 -30.87 354.62 -8.07 -38.94 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -7.24 Total: 16.34 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -1.14 Total: 9.48 kcal Atomic # 7 Polarization: -58.75 SS G_CDS: -0.17 Total: -58.92 kcal Atomic # 8 Polarization: -27.00 SS G_CDS: 0.16 Total: -26.84 kcal Atomic # 14 Polarization: 20.68 SS G_CDS: -5.02 Total: 15.66 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -30.87 -8.07 -38.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000134738036.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.663 kcal (2) G-P(sol) polarization free energy of solvation -30.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.533 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.067 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.937 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds