Wall clock time and date at job start Tue Mar 31 2020 04:19:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 N 1.46498 * 109.47568 * 180.02562 * 3 2 1 5 5 C 1.34781 * 120.00197 * 179.97438 * 4 3 2 6 6 O 1.21534 * 119.99565 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99940 * 179.97438 * 5 4 3 8 8 C 1.34775 * 119.99849 * 180.02562 * 7 5 4 9 9 O 1.21242 * 119.99846 * 359.97438 * 8 7 5 10 10 C 1.50693 * 120.00143 * 179.97438 * 8 7 5 11 11 N 1.46503 * 109.47477 * 179.97438 * 10 8 7 12 12 C 1.36943 * 119.99765 * 269.99829 * 11 10 8 13 13 H 1.07997 * 120.00232 * 187.61903 * 12 11 10 14 14 C 1.38819 * 119.99865 * 7.62271 * 12 11 10 15 15 N 1.31614 * 120.00098 * 26.67805 * 14 12 11 16 16 Si 1.86803 * 119.99591 * 206.68262 * 14 12 11 17 17 H 1.48497 * 109.47175 * 59.99942 * 16 14 12 18 18 H 1.48499 * 109.46705 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47068 * 299.99605 * 16 14 12 20 20 C 1.46489 * 120.00322 * 89.99664 * 11 10 8 21 21 C 1.54265 * 110.03382 * 117.07912 * 20 11 10 22 22 C 1.54969 * 104.16134 * 95.75423 * 21 20 11 23 23 C 1.54895 * 102.77339 * 37.89076 * 22 21 20 24 24 C 1.53877 * 110.03612 * 234.29736 * 20 11 10 25 25 H 1.09002 * 109.47223 * 60.00274 * 1 2 3 26 26 H 1.09002 * 109.47031 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47082 * 299.99530 * 1 2 3 28 28 H 1.09006 * 109.47404 * 239.99947 * 2 1 3 29 29 H 1.08995 * 109.47618 * 119.99737 * 2 1 3 30 30 H 1.09000 * 109.47345 * 59.99595 * 3 2 1 31 31 H 1.09002 * 109.47206 * 300.00290 * 3 2 1 32 32 H 0.97000 * 119.99764 * 359.97438 * 4 3 2 33 33 H 0.96993 * 120.00282 * 359.97438 * 7 5 4 34 34 H 1.09006 * 109.47374 * 59.99559 * 10 8 7 35 35 H 1.09002 * 109.46970 * 299.99511 * 10 8 7 36 36 H 0.97002 * 120.00220 * 174.56204 * 15 14 12 37 37 H 1.09006 * 110.01974 * 355.69242 * 20 11 10 38 38 H 1.08995 * 110.49026 * 214.40334 * 21 20 11 39 39 H 1.09005 * 110.48571 * 337.05087 * 21 20 11 40 40 H 1.08997 * 110.72243 * 279.57640 * 22 21 20 41 41 H 1.08996 * 110.92544 * 156.29505 * 22 21 20 42 42 H 1.08998 * 110.48396 * 203.40309 * 23 22 21 43 43 H 1.08998 * 110.59870 * 80.81756 * 23 22 21 44 44 H 1.09002 * 110.02934 * 359.95524 * 24 20 11 45 45 H 1.09003 * 110.03295 * 121.37868 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1788 2.6098 -0.0012 6 8 3.5711 3.6622 -0.0008 7 7 5.5266 2.6098 -0.0013 8 6 6.2004 3.7770 -0.0014 9 8 5.5942 4.8269 -0.0019 10 6 7.7074 3.7770 -0.0009 11 7 8.1957 5.1583 -0.0017 12 6 8.4244 5.8029 -1.1881 13 1 8.8989 6.7730 -1.1929 14 6 8.0462 5.2093 -2.3847 15 7 7.0517 4.3475 -2.4063 16 14 8.9489 5.6338 -3.9641 17 1 10.3839 5.2780 -3.8249 18 1 8.3566 4.8719 -5.0927 19 1 8.8233 7.0893 -4.2301 20 6 8.4394 5.8499 1.2664 21 6 9.9345 6.2076 1.3945 22 6 10.0183 7.6717 0.8935 23 6 8.7146 8.2984 1.4476 24 6 7.6640 7.1786 1.2998 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9900 0.6025 -0.0006 33 1 6.0116 1.7698 -0.0005 34 1 8.0711 3.2629 -0.8906 35 1 8.0704 3.2635 0.8895 36 1 6.7357 3.9927 -3.2520 37 1 8.1339 5.2182 2.1007 38 1 10.2549 6.1415 2.4342 39 1 10.5385 5.5534 0.7658 40 1 10.0310 7.7064 -0.1958 41 1 10.8936 8.1744 1.3047 42 1 8.4294 9.1694 0.8576 43 1 8.8359 8.5718 2.4957 44 1 7.1070 7.3092 0.3720 45 1 6.9821 7.1917 2.1501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000156763934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:08 Heat of formation + Delta-G solvation = -45.515295 kcal Electronic energy + Delta-G solvation = -25267.811949 eV Core-core repulsion = 21707.207518 eV Total energy + Delta-G solvation = -3560.604431 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.04619 -38.09707 -37.08881 -35.38885 -33.88746 -33.45365 -32.09108 -30.89620 -27.80486 -27.69137 -26.58473 -25.95378 -22.98498 -21.77812 -21.08570 -19.87694 -19.38479 -19.01879 -18.13097 -16.37650 -16.07605 -15.79908 -15.53222 -14.87173 -14.68856 -14.50785 -14.13091 -14.09763 -13.39489 -13.21899 -12.95230 -12.77865 -12.68199 -12.29195 -12.15074 -12.12441 -11.29309 -11.24408 -11.07461 -10.97011 -10.80691 -10.64962 -10.36903 -10.31874 -10.24222 -10.21490 -9.98547 -9.90202 -9.62992 -9.42932 -8.96708 -8.68982 -8.64082 -8.17833 -6.89567 -5.80953 -3.03284 3.11596 3.38923 3.41397 3.48207 3.48675 4.45366 4.49592 4.71126 4.74834 4.84452 5.11391 5.28742 5.30217 5.47069 5.50229 5.52751 5.56397 5.63916 5.74815 5.86856 6.02438 6.06664 6.07958 6.15613 6.31361 6.34006 6.39680 6.49301 6.57750 6.67733 6.70310 6.72794 6.85572 6.92787 7.00632 7.05319 7.19658 7.44328 7.61553 7.91789 8.22403 8.35863 9.14348 9.20403 9.61082 9.86618 10.27881 11.29532 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017633 B = 0.004199 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.537661 B = 6666.048016 C = 7697.797586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.134 4.134 3 C 0.136 3.864 4 N -0.753 5.753 5 C 0.691 3.309 6 O -0.541 6.541 7 N -0.695 5.695 8 C 0.519 3.481 9 O -0.458 6.458 10 C 0.165 3.835 11 N -0.563 5.563 12 C -0.240 4.240 13 H 0.087 0.913 14 C -0.003 4.003 15 N -0.903 5.903 16 Si 0.901 3.099 17 H -0.285 1.285 18 H -0.294 1.294 19 H -0.286 1.286 20 C 0.172 3.828 21 C -0.131 4.131 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.132 4.132 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.057 0.943 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.392 0.608 33 H 0.394 0.606 34 H 0.108 0.892 35 H 0.041 0.959 36 H 0.254 0.746 37 H 0.049 0.951 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.074 0.926 41 H 0.046 0.954 42 H 0.052 0.948 43 H 0.049 0.951 44 H 0.085 0.915 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.451 -9.983 7.201 12.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.172 4.172 3 C 0.012 3.988 4 N -0.412 5.412 5 C 0.391 3.609 6 O -0.414 6.414 7 N -0.361 5.361 8 C 0.304 3.696 9 O -0.323 6.323 10 C 0.034 3.966 11 N -0.281 5.281 12 C -0.369 4.369 13 H 0.104 0.896 14 C -0.200 4.200 15 N -0.549 5.549 16 Si 0.732 3.268 17 H -0.212 1.212 18 H -0.220 1.220 19 H -0.212 1.212 20 C 0.065 3.935 21 C -0.170 4.170 22 C -0.158 4.158 23 C -0.159 4.159 24 C -0.171 4.171 25 H 0.077 0.923 26 H 0.076 0.924 27 H 0.076 0.924 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.225 0.775 33 H 0.226 0.774 34 H 0.126 0.874 35 H 0.059 0.941 36 H 0.065 0.935 37 H 0.068 0.932 38 H 0.067 0.933 39 H 0.089 0.911 40 H 0.092 0.908 41 H 0.065 0.935 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.103 0.897 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -3.369 -8.345 7.052 11.433 hybrid contribution 0.508 -0.725 -1.147 1.449 sum -2.861 -9.070 5.905 11.194 Atomic orbital electron populations 1.21674 0.94765 1.01861 1.02396 1.21727 0.96749 0.96209 1.02542 1.21177 0.78997 0.96400 1.02250 1.45370 1.06987 1.07309 1.81502 1.16459 0.82425 0.84055 0.77915 1.91003 1.67477 1.29815 1.53073 1.44871 1.05316 1.12344 1.73615 1.22805 0.91971 0.81631 0.73224 1.90628 1.69428 1.30427 1.41827 1.20852 0.87361 0.88013 1.00416 1.44255 1.72778 1.09526 1.01548 1.19271 1.32329 1.02784 0.82526 0.89573 1.24715 0.97644 1.00001 0.97678 1.69801 1.24231 1.35762 1.25099 0.86331 0.79796 0.77678 0.82980 1.21226 1.21984 1.21227 1.20974 0.92377 0.92447 0.87740 1.22796 0.98790 0.96576 0.98854 1.22513 0.96076 0.95853 1.01335 1.22297 0.96324 0.98148 0.99099 1.22599 0.97428 0.94801 1.02287 0.92329 0.92388 0.92379 0.91373 0.91453 0.91930 0.91850 0.77510 0.77418 0.87441 0.94060 0.93502 0.93228 0.93293 0.91115 0.90772 0.93477 0.92898 0.93186 0.89661 0.93816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.91 37.15 0.37 -0.77 16 2 C -0.13 -1.14 6.05 -26.74 -0.16 -1.30 16 3 C 0.14 1.72 5.67 -4.04 -0.02 1.70 16 4 N -0.75 -10.55 5.56 -65.24 -0.36 -10.91 16 5 C 0.69 13.88 8.50 -86.92 -0.74 13.14 16 6 O -0.54 -14.05 14.74 -18.47 -0.27 -14.32 16 7 N -0.70 -13.21 5.24 -15.78 -0.08 -13.29 16 8 C 0.52 12.29 5.86 -10.99 -0.06 12.23 16 9 O -0.46 -13.37 14.58 -18.22 -0.27 -13.64 16 10 C 0.17 3.61 5.39 -5.20 -0.03 3.58 16 11 N -0.56 -13.27 1.92 -165.75 -0.32 -13.59 16 12 C -0.24 -6.25 8.08 -15.05 -0.12 -6.37 16 13 H 0.09 2.23 5.37 -52.49 -0.28 1.94 16 14 C 0.00 -0.09 4.86 -17.43 -0.08 -0.17 16 15 N -0.90 -25.10 9.07 55.49 0.50 -24.60 16 16 Si 0.90 21.56 29.63 -169.99 -5.04 16.53 16 17 H -0.29 -6.68 7.11 56.52 0.40 -6.27 16 18 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 19 H -0.29 -6.95 7.11 56.52 0.40 -6.54 16 20 C 0.17 3.54 3.47 -66.82 -0.23 3.30 16 21 C -0.13 -2.31 6.18 -25.03 -0.15 -2.47 16 22 C -0.12 -2.08 6.45 -24.69 -0.16 -2.24 16 23 C -0.12 -2.12 6.83 -25.07 -0.17 -2.29 16 24 C -0.13 -2.76 6.20 -25.61 -0.16 -2.91 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.48 16 32 H 0.39 3.99 8.49 -40.82 -0.35 3.64 16 33 H 0.39 5.50 8.71 -40.82 -0.36 5.14 16 34 H 0.11 2.47 6.29 -51.93 -0.33 2.15 16 35 H 0.04 0.75 7.97 -51.93 -0.41 0.33 16 36 H 0.25 7.12 8.32 -40.82 -0.34 6.78 16 37 H 0.05 0.97 7.87 -51.93 -0.41 0.56 16 38 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 39 H 0.07 1.31 8.04 -51.93 -0.42 0.90 16 40 H 0.07 1.42 6.11 -51.93 -0.32 1.11 16 41 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 43 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 44 H 0.08 2.15 7.15 -51.93 -0.37 1.78 16 45 H 0.04 0.88 8.14 -51.93 -0.42 0.45 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -35.63 357.54 -9.62 -45.25 By element: Atomic # 1 Polarization: 15.21 SS G_CDS: -7.45 Total: 7.76 kcal Atomic # 6 Polarization: 17.15 SS G_CDS: -1.73 Total: 15.42 kcal Atomic # 7 Polarization: -62.13 SS G_CDS: -0.26 Total: -62.39 kcal Atomic # 8 Polarization: -27.42 SS G_CDS: -0.54 Total: -27.96 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.04 Total: 16.53 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -35.63 -9.62 -45.25 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156763934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.260 kcal (2) G-P(sol) polarization free energy of solvation -35.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.625 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.515 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds