Wall clock time and date at job start Tue Mar 31 2020 04:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.52998 * 109.47322 * 2 1 4 4 N 1.46498 * 109.47568 * 180.02562 * 3 2 1 5 5 C 1.34781 * 120.00197 * 179.97438 * 4 3 2 6 6 O 1.21534 * 119.99565 * 0.02562 * 5 4 3 7 7 N 1.34776 * 119.99940 * 179.97438 * 5 4 3 8 8 C 1.34775 * 119.99849 * 180.02562 * 7 5 4 9 9 O 1.21242 * 119.99846 * 359.97438 * 8 7 5 10 10 C 1.50693 * 120.00143 * 179.97438 * 8 7 5 11 11 N 1.46503 * 109.47477 * 179.97438 * 10 8 7 12 12 C 1.36943 * 119.99765 * 269.99829 * 11 10 8 13 13 H 1.07997 * 120.00232 * 187.61903 * 12 11 10 14 14 C 1.38819 * 119.99865 * 7.62271 * 12 11 10 15 15 N 1.31614 * 120.00098 * 26.67805 * 14 12 11 16 16 Si 1.86803 * 119.99591 * 206.68262 * 14 12 11 17 17 H 1.48497 * 109.47175 * 59.99942 * 16 14 12 18 18 H 1.48499 * 109.46705 * 180.02562 * 16 14 12 19 19 H 1.48496 * 109.47068 * 299.99605 * 16 14 12 20 20 C 1.46489 * 120.00322 * 89.99664 * 11 10 8 21 21 C 1.54265 * 110.03382 * 117.07912 * 20 11 10 22 22 C 1.54969 * 104.16134 * 95.75423 * 21 20 11 23 23 C 1.54895 * 102.77339 * 37.89076 * 22 21 20 24 24 C 1.53877 * 110.03612 * 234.29736 * 20 11 10 25 25 H 1.09002 * 109.47223 * 60.00274 * 1 2 3 26 26 H 1.09002 * 109.47031 * 179.97438 * 1 2 3 27 27 H 1.08998 * 109.47082 * 299.99530 * 1 2 3 28 28 H 1.09006 * 109.47404 * 239.99947 * 2 1 3 29 29 H 1.08995 * 109.47618 * 119.99737 * 2 1 3 30 30 H 1.09000 * 109.47345 * 59.99595 * 3 2 1 31 31 H 1.09002 * 109.47206 * 300.00290 * 3 2 1 32 32 H 0.97000 * 119.99764 * 359.97438 * 4 3 2 33 33 H 0.96993 * 120.00282 * 359.97438 * 7 5 4 34 34 H 1.09006 * 109.47374 * 59.99559 * 10 8 7 35 35 H 1.09002 * 109.46970 * 299.99511 * 10 8 7 36 36 H 0.97002 * 120.00220 * 174.56204 * 15 14 12 37 37 H 1.09006 * 110.01974 * 355.69242 * 20 11 10 38 38 H 1.08995 * 110.49026 * 214.40334 * 21 20 11 39 39 H 1.09005 * 110.48571 * 337.05087 * 21 20 11 40 40 H 1.08997 * 110.72243 * 279.57640 * 22 21 20 41 41 H 1.08996 * 110.92544 * 156.29505 * 22 21 20 42 42 H 1.08998 * 110.48396 * 203.40309 * 23 22 21 43 43 H 1.08998 * 110.59870 * 80.81756 * 23 22 21 44 44 H 1.09002 * 110.02934 * 359.95524 * 24 20 11 45 45 H 1.09003 * 110.03295 * 121.37868 * 24 20 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 6 4.1788 2.6098 -0.0012 6 8 3.5711 3.6622 -0.0008 7 7 5.5266 2.6098 -0.0013 8 6 6.2004 3.7770 -0.0014 9 8 5.5942 4.8269 -0.0019 10 6 7.7074 3.7770 -0.0009 11 7 8.1957 5.1583 -0.0017 12 6 8.4244 5.8029 -1.1881 13 1 8.8989 6.7730 -1.1929 14 6 8.0462 5.2093 -2.3847 15 7 7.0517 4.3475 -2.4063 16 14 8.9489 5.6338 -3.9641 17 1 10.3839 5.2780 -3.8249 18 1 8.3566 4.8719 -5.0927 19 1 8.8233 7.0893 -4.2301 20 6 8.4394 5.8499 1.2664 21 6 9.9345 6.2076 1.3945 22 6 10.0183 7.6717 0.8935 23 6 8.7146 8.2984 1.4476 24 6 7.6640 7.1786 1.2998 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6766 1.9564 0.8899 31 1 1.6766 1.9563 -0.8900 32 1 3.9900 0.6025 -0.0006 33 1 6.0116 1.7698 -0.0005 34 1 8.0711 3.2629 -0.8906 35 1 8.0704 3.2635 0.8895 36 1 6.7357 3.9927 -3.2520 37 1 8.1339 5.2182 2.1007 38 1 10.2549 6.1415 2.4342 39 1 10.5385 5.5534 0.7658 40 1 10.0310 7.7064 -0.1958 41 1 10.8936 8.1744 1.3047 42 1 8.4294 9.1694 0.8576 43 1 8.8359 8.5718 2.4957 44 1 7.1070 7.3092 0.3720 45 1 6.9821 7.1917 2.1501 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156763934.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 04:19:07 Heat of formation + Delta-G solvation = -69.802665 kcal Electronic energy + Delta-G solvation = -25268.865128 eV Core-core repulsion = 21707.207518 eV Total energy + Delta-G solvation = -3561.657610 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 297.184 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.70891 -39.74640 -38.69898 -36.65717 -35.68069 -35.20874 -33.21909 -32.79081 -29.33631 -29.29949 -28.29435 -27.13610 -24.72804 -22.85021 -22.49483 -21.34366 -21.08461 -20.71653 -19.64556 -18.17588 -17.72234 -17.32089 -16.93437 -16.30479 -16.20359 -15.94939 -15.87446 -15.66195 -14.99219 -14.90465 -14.37715 -14.29734 -13.95769 -13.82308 -13.42983 -13.22734 -12.89217 -12.82623 -12.52710 -12.41329 -12.14544 -12.02204 -12.01023 -11.80982 -11.74527 -11.73494 -11.70480 -11.52152 -11.33548 -11.08966 -10.75604 -10.56721 -10.13783 -10.03242 -8.77697 -7.82867 -5.04254 1.48718 1.50581 1.56674 1.67943 1.70671 2.56033 2.78690 3.25006 3.35172 3.61043 3.93213 3.97865 4.04395 4.09059 4.29887 4.36701 4.45964 4.67112 4.68855 4.73662 4.75717 4.78037 4.86811 4.95037 4.97957 5.05534 5.14468 5.19579 5.26142 5.26693 5.28527 5.31493 5.33525 5.49125 5.51134 5.59538 5.64129 5.76928 5.92055 5.99802 6.36459 6.91998 7.19422 7.63870 7.82094 7.99366 8.32908 9.24950 Molecular weight = 297.18amu Principal moments of inertia in cm(-1) A = 0.017633 B = 0.004199 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1587.537661 B = 6666.048016 C = 7697.797586 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.121 4.121 3 C 0.132 3.868 4 N -0.724 5.724 5 C 0.685 3.315 6 O -0.605 6.605 7 N -0.681 5.681 8 C 0.521 3.479 9 O -0.521 6.521 10 C 0.165 3.835 11 N -0.575 5.575 12 C -0.232 4.232 13 H 0.083 0.917 14 C -0.056 4.056 15 N -0.924 5.924 16 Si 0.956 3.044 17 H -0.273 1.273 18 H -0.303 1.303 19 H -0.294 1.294 20 C 0.161 3.839 21 C -0.119 4.119 22 C -0.118 4.118 23 C -0.113 4.113 24 C -0.130 4.130 25 H 0.051 0.949 26 H 0.077 0.923 27 H 0.056 0.944 28 H 0.079 0.921 29 H 0.086 0.914 30 H 0.051 0.949 31 H 0.042 0.958 32 H 0.415 0.585 33 H 0.419 0.581 34 H 0.097 0.903 35 H 0.086 0.914 36 H 0.242 0.758 37 H 0.060 0.940 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.047 0.953 41 H 0.080 0.920 42 H 0.049 0.951 43 H 0.080 0.920 44 H 0.030 0.970 45 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.926 -11.676 8.734 14.610 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.159 4.159 3 C 0.008 3.992 4 N -0.384 5.384 5 C 0.386 3.614 6 O -0.482 6.482 7 N -0.349 5.349 8 C 0.308 3.692 9 O -0.391 6.391 10 C 0.034 3.966 11 N -0.293 5.293 12 C -0.362 4.362 13 H 0.100 0.900 14 C -0.250 4.250 15 N -0.573 5.573 16 Si 0.787 3.213 17 H -0.199 1.199 18 H -0.230 1.230 19 H -0.221 1.221 20 C 0.055 3.945 21 C -0.158 4.158 22 C -0.155 4.155 23 C -0.150 4.150 24 C -0.170 4.170 25 H 0.070 0.930 26 H 0.096 0.904 27 H 0.075 0.925 28 H 0.098 0.902 29 H 0.105 0.895 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.252 0.748 33 H 0.256 0.744 34 H 0.115 0.885 35 H 0.104 0.896 36 H 0.051 0.949 37 H 0.079 0.921 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.066 0.934 41 H 0.099 0.901 42 H 0.068 0.932 43 H 0.099 0.901 44 H 0.049 0.951 45 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -1.800 -10.150 8.612 13.432 hybrid contribution -0.038 -0.219 -1.542 1.558 sum -1.838 -10.369 7.070 12.684 Atomic orbital electron populations 1.21696 0.94004 1.03011 1.02064 1.21673 0.97226 0.92961 1.04022 1.21362 0.77749 0.99337 1.00766 1.45139 1.07642 1.06426 1.79160 1.16718 0.82546 0.84688 0.77455 1.90966 1.68643 1.32662 1.55904 1.44451 1.05331 1.12570 1.72516 1.23141 0.92823 0.81695 0.71568 1.90609 1.70711 1.32915 1.44826 1.20964 0.86093 0.87716 1.01874 1.44495 1.72691 1.10241 1.01903 1.19472 1.30696 1.02394 0.83676 0.89952 1.25293 0.98558 1.01123 1.00016 1.69973 1.25529 1.37351 1.24401 0.85474 0.79288 0.76524 0.79978 1.19855 1.23000 1.22091 1.21270 0.94388 0.92058 0.86812 1.22691 0.96003 0.96337 1.00753 1.22484 0.97120 0.96059 0.99858 1.22267 0.95118 0.96657 1.01003 1.22505 0.98073 0.96990 0.99383 0.93002 0.90424 0.92528 0.90208 0.89548 0.93019 0.93975 0.74760 0.74391 0.88511 0.89584 0.94852 0.92139 0.89901 0.91948 0.93396 0.90140 0.93223 0.90098 0.95105 0.93828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.01 9.91 71.98 0.71 -1.30 16 2 C -0.12 -1.78 6.05 30.59 0.19 -1.59 16 3 C 0.13 3.28 5.67 86.38 0.49 3.77 16 4 N -0.72 -19.61 5.56 -478.59 -2.66 -22.27 16 5 C 0.69 27.89 8.50 179.05 1.52 29.41 16 6 O -0.60 -32.77 14.74 18.94 0.28 -32.49 16 7 N -0.68 -25.80 5.24 -440.53 -2.31 -28.11 16 8 C 0.52 25.09 5.86 87.66 0.51 25.61 16 9 O -0.52 -31.71 14.58 19.85 0.29 -31.42 16 10 C 0.16 7.13 5.39 85.63 0.46 7.59 16 11 N -0.58 -27.15 1.92 -678.32 -1.30 -28.45 16 12 C -0.23 -12.29 8.08 84.03 0.68 -11.62 16 13 H 0.08 4.35 5.37 -2.91 -0.02 4.33 16 14 C -0.06 -3.06 4.86 84.86 0.41 -2.65 16 15 N -0.92 -52.86 9.07 21.65 0.20 -52.67 16 16 Si 0.96 45.35 29.63 68.60 2.03 47.38 16 17 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 18 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 19 H -0.29 -14.16 7.11 99.48 0.71 -13.45 16 20 C 0.16 6.45 3.47 45.72 0.16 6.61 16 21 C -0.12 -3.87 6.18 31.70 0.20 -3.67 16 22 C -0.12 -3.79 6.45 31.92 0.21 -3.59 16 23 C -0.11 -3.76 6.83 31.67 0.22 -3.54 16 24 C -0.13 -5.48 6.20 31.32 0.19 -5.28 16 25 H 0.05 0.76 8.14 -2.39 -0.02 0.75 16 26 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 28 H 0.08 1.03 8.14 -2.38 -0.02 1.02 16 29 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.41 8.14 -2.39 -0.02 1.39 16 31 H 0.04 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.42 7.42 8.49 -92.71 -0.79 6.63 16 33 H 0.42 11.08 8.71 -92.71 -0.81 10.27 16 34 H 0.10 4.44 6.29 -2.38 -0.01 4.42 16 35 H 0.09 2.90 7.97 -2.39 -0.02 2.88 16 36 H 0.24 14.00 8.32 -92.71 -0.77 13.23 16 37 H 0.06 2.25 7.87 -2.38 -0.02 2.24 16 38 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 39 H 0.06 2.16 8.04 -2.38 -0.02 2.14 16 40 H 0.05 1.79 6.11 -2.39 -0.01 1.78 16 41 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 42 H 0.05 1.67 8.14 -2.39 -0.02 1.65 16 43 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 44 H 0.03 1.61 7.15 -2.39 -0.02 1.60 16 45 H 0.04 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -82.91 357.54 1.88 -81.03 By element: Atomic # 1 Polarization: 27.85 SS G_CDS: -0.60 Total: 27.26 kcal Atomic # 6 Polarization: 33.80 SS G_CDS: 5.95 Total: 39.75 kcal Atomic # 7 Polarization: -125.43 SS G_CDS: -6.08 Total: -131.51 kcal Atomic # 8 Polarization: -64.48 SS G_CDS: 0.57 Total: -63.91 kcal Atomic # 14 Polarization: 45.35 SS G_CDS: 2.03 Total: 47.38 kcal Total: -82.91 1.88 -81.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156763934.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.226 kcal (2) G-P(sol) polarization free energy of solvation -82.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.680 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.028 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.803 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds