Wall clock time and date at job start Tue Mar 31 2020 04:10:46
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52999 * 1
3 3 C 1.52999 * 109.47232 * 2 1
4 4 N 1.46504 * 109.47120 * 179.97438 * 3 2 1
5 5 C 1.34774 * 120.00324 * 179.97438 * 4 3 2
6 6 O 1.21285 * 119.99621 * 0.02562 * 5 4 3
7 7 C 1.50694 * 120.00287 * 180.02562 * 5 4 3
8 8 C 1.52999 * 109.47083 * 180.02562 * 7 5 4
9 9 C 1.50704 * 109.47080 * 179.97438 * 8 7 5
10 10 O 1.21286 * 119.99950 * 359.97438 * 9 8 7
11 11 N 1.34774 * 120.00284 * 179.97438 * 9 8 7
12 12 C 1.46957 * 120.59483 * 179.97438 * 11 9 8
13 13 C 1.53378 * 108.63600 * 235.24927 * 12 11 9
14 14 N 1.46960 * 108.63441 * 310.57541 * 13 12 11
15 15 C 1.36929 * 120.59772 * 235.19929 * 14 13 12
16 16 H 1.08001 * 120.00154 * 26.80307 * 15 14 13
17 17 C 1.38818 * 120.00276 * 206.52209 * 15 14 13
18 18 N 1.31616 * 120.00013 * 217.35632 * 17 15 14
19 19 Si 1.86795 * 119.99797 * 37.35637 * 17 15 14
20 20 H 1.48497 * 109.47307 * 95.28345 * 19 17 15
21 21 H 1.48499 * 109.46918 * 215.28171 * 19 17 15
22 22 H 1.48500 * 109.47058 * 335.28197 * 19 17 15
23 23 C 1.46972 * 118.81093 * 55.48291 * 14 13 12
24 24 C 1.46973 * 120.59110 * 0.02618 * 11 9 8
25 25 H 1.09004 * 109.46872 * 300.00178 * 1 2 3
26 26 H 1.09002 * 109.47087 * 59.99563 * 1 2 3
27 27 H 1.08991 * 109.47351 * 180.02562 * 1 2 3
28 28 H 1.08992 * 109.47505 * 239.99776 * 2 1 3
29 29 H 1.09008 * 109.46844 * 119.99756 * 2 1 3
30 30 H 1.09004 * 109.47337 * 60.00107 * 3 2 1
31 31 H 1.08994 * 109.47261 * 299.99590 * 3 2 1
32 32 H 0.97002 * 119.99363 * 0.02562 * 4 3 2
33 33 H 1.09005 * 109.47341 * 60.00036 * 7 5 4
34 34 H 1.08999 * 109.47310 * 300.00089 * 7 5 4
35 35 H 1.08997 * 109.46961 * 60.00365 * 8 7 5
36 36 H 1.08994 * 109.47261 * 299.99740 * 8 7 5
37 37 H 1.09004 * 109.60829 * 115.50719 * 12 11 9
38 38 H 1.08993 * 109.75563 * 355.08178 * 12 11 9
39 39 H 1.09001 * 109.60979 * 190.83526 * 13 12 11
40 40 H 1.08998 * 109.74677 * 70.41012 * 13 12 11
41 41 H 0.97000 * 120.00046 * 180.02562 * 18 17 15
42 42 H 1.09002 * 109.61298 * 64.25873 * 23 14 13
43 43 H 1.08995 * 109.61261 * 184.77395 * 23 14 13
44 44 H 1.08994 * 109.60538 * 244.49313 * 24 11 9
45 45 H 1.09004 * 109.60748 * 4.83428 * 24 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0400 1.4425 0.0000
4 7 3.5051 1.4425 0.0006
5 6 4.1790 2.6096 0.0002
6 8 3.5726 3.6599 -0.0002
7 6 5.6860 2.6095 0.0003
8 6 6.1960 4.0520 0.0004
9 6 7.7030 4.0520 0.0011
10 8 8.3094 3.0016 0.0019
11 7 8.3770 5.2191 0.0008
12 6 9.8465 5.2343 0.0020
13 6 10.3270 6.0686 1.1959
14 7 9.6056 7.3489 1.1949
15 6 10.2902 8.5347 1.1956
16 1 11.2837 8.5849 0.7750
17 6 9.7051 9.6738 1.7315
18 7 9.9046 10.8449 1.1650
19 14 8.6345 9.5443 3.2568
20 1 9.4523 9.8352 4.4617
21 1 7.5222 10.5239 3.1653
22 1 8.0780 8.1711 3.3559
23 6 8.1359 7.3337 1.1994
24 6 7.6554 6.4995 0.0003
25 1 -0.3633 0.5139 0.8900
26 1 -0.3633 0.5139 -0.8900
27 1 -0.3633 -1.0276 0.0005
28 1 1.8934 -0.5138 -0.8899
29 1 1.8933 -0.5138 0.8901
30 1 1.6767 1.9564 0.8900
31 1 1.6768 1.9563 -0.8900
32 1 3.9900 0.6023 0.0006
33 1 6.0494 2.0954 -0.8896
34 1 6.0493 2.0960 0.8904
35 1 5.8327 4.5657 0.8904
36 1 5.8328 4.5659 -0.8895
37 1 10.2085 5.6795 -0.9248
38 1 10.2253 4.2162 0.0910
39 1 11.3978 6.2520 1.1067
40 1 10.1235 5.5346 2.1241
41 1 9.4961 11.6408 1.5397
42 1 7.7775 6.8864 2.1265
43 1 7.7593 8.3528 1.1125
44 1 7.8611 7.0349 -0.9265
45 1 6.5844 6.3158 0.0869
RHF calculation, no. of doubly occupied orbitals= 57
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC000330836197.mol2 45
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 04:10:46
Heat of formation + Delta-G solvation = -52.855917 kcal
Electronic energy + Delta-G solvation = -24150.341206 eV
Core-core repulsion = 20589.418462 eV
Total energy + Delta-G solvation = -3560.922744 eV
No. of doubly occupied orbitals = 57
Molecular weight
(most abundant/longest-lived isotopes) = 297.184 amu
Computer time = 0.65 seconds
Orbital eigenvalues (eV)
-40.20167 -39.47202 -37.06383 -36.15033 -33.93664 -33.23420 -32.68506 -31.53282
-30.59071 -27.72166 -26.82898 -24.93796 -23.24043 -23.11019 -22.06046 -20.85554
-20.20681 -18.64647 -17.72708 -16.65620 -16.41972 -16.38474 -16.00143 -15.67970
-15.43129 -14.90219 -14.60614 -14.27882 -13.99588 -13.79320 -13.44668 -13.35269
-13.08587 -12.89630 -12.67382 -12.50617 -12.29512 -12.21515 -12.11076 -11.71891
-11.58873 -11.36150 -11.25358 -10.99271 -10.79674 -10.46423 -10.36348 -10.17889
-10.02821 -9.50198 -9.47939 -9.36955 -8.72451 -8.22119 -7.02479 -6.10742
-3.29341 2.46345 2.83691 2.87283 3.34598 3.40637 3.49002 3.53880
4.36003 4.47378 4.50207 4.52054 4.73504 4.81998 4.85688 4.98752
4.99651 5.16442 5.17656 5.24538 5.34285 5.47927 5.55108 5.63210
5.63684 5.65046 5.74684 5.75178 5.81510 5.86486 5.94855 6.08466
6.11191 6.14875 6.26484 6.51776 6.59208 6.75900 6.92939 7.20293
7.76271 7.87148 8.00094 8.23788 8.42295 8.87309 9.65992 10.06252
11.03557
Molecular weight = 297.18amu
Principal moments of inertia in cm(-1)
A = 0.023237 B = 0.002907 C = 0.002675
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1204.666770 B = 9629.626610 C =10463.442906
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.150 4.150
2 C -0.136 4.136
3 C 0.116 3.884
4 N -0.736 5.736
5 C 0.513 3.487
6 O -0.539 6.539
7 C -0.123 4.123
8 C -0.125 4.125
9 C 0.511 3.489
10 O -0.562 6.562
11 N -0.597 5.597
12 C 0.095 3.905
13 C 0.132 3.868
14 N -0.600 5.600
15 C -0.276 4.276
16 H 0.082 0.918
17 C 0.039 3.961
18 N -0.878 5.878
19 Si 0.834 3.166
20 H -0.292 1.292
21 H -0.293 1.293
22 H -0.258 1.258
23 C 0.131 3.869
24 C 0.083 3.917
25 H 0.058 0.942
26 H 0.058 0.942
27 H 0.059 0.941
28 H 0.069 0.931
29 H 0.069 0.931
30 H 0.067 0.933
31 H 0.067 0.933
32 H 0.402 0.598
33 H 0.101 0.899
34 H 0.101 0.899
35 H 0.100 0.900
36 H 0.099 0.901
37 H 0.066 0.934
38 H 0.085 0.915
39 H 0.074 0.926
40 H 0.025 0.975
41 H 0.263 0.737
42 H 0.033 0.967
43 H 0.078 0.922
44 H 0.074 0.926
45 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -14.566 -20.860 -3.471 25.678
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.208 4.208
2 C -0.174 4.174
3 C -0.007 4.007
4 N -0.389 5.389
5 C 0.300 3.700
6 O -0.416 6.416
7 C -0.163 4.163
8 C -0.165 4.165
9 C 0.300 3.700
10 O -0.442 6.442
11 N -0.329 5.329
12 C -0.028 4.028
13 C 0.006 3.994
14 N -0.323 5.323
15 C -0.403 4.403
16 H 0.100 0.900
17 C -0.162 4.162
18 N -0.517 5.517
19 Si 0.661 3.339
20 H -0.220 1.220
21 H -0.220 1.220
22 H -0.182 1.182
23 C 0.004 3.996
24 C -0.041 4.041
25 H 0.077 0.923
26 H 0.077 0.923
27 H 0.078 0.922
28 H 0.087 0.913
29 H 0.087 0.913
30 H 0.085 0.915
31 H 0.085 0.915
32 H 0.236 0.764
33 H 0.119 0.881
34 H 0.119 0.881
35 H 0.118 0.882
36 H 0.117 0.883
37 H 0.085 0.915
38 H 0.103 0.897
39 H 0.092 0.908
40 H 0.043 0.957
41 H 0.073 0.927
42 H 0.051 0.949
43 H 0.096 0.904
44 H 0.092 0.908
45 H 0.097 0.903
Dipole moment (debyes) X Y Z Total
from point charges -14.682 -20.406 -3.491 25.380
hybrid contribution -0.390 -0.138 1.019 1.100
sum -15.071 -20.544 -2.472 25.599
Atomic orbital electron populations
1.21682 0.94527 1.02175 1.02418 1.21742 0.97043 0.95865 1.02770
1.21404 0.79703 0.97094 1.02514 1.46044 1.07339 1.08926 1.76566
1.20831 0.90431 0.83459 0.75312 1.90724 1.70653 1.31222 1.48952
1.21364 0.90466 0.98642 1.05816 1.21376 0.92194 0.97150 1.05758
1.20544 0.89851 0.83457 0.76198 1.90634 1.70548 1.31003 1.52002
1.48027 1.07523 1.05911 1.71414 1.22194 0.78923 1.01263 1.00463
1.21343 0.96820 0.86900 0.94374 1.44301 1.00209 1.01883 1.85901
1.18759 1.02442 0.84159 1.34922 0.90006 1.25210 0.97563 0.94795
0.98648 1.70121 1.44915 0.99470 1.37213 0.87604 0.80174 0.78510
0.87625 1.21996 1.21979 1.18215 1.21779 0.85150 0.98616 0.94024
1.22628 0.95559 0.84115 1.01810 0.92303 0.92306 0.92166 0.91273
0.91264 0.91487 0.91489 0.76434 0.88105 0.88091 0.88190 0.88257
0.91523 0.89716 0.90759 0.95664 0.92694 0.94930 0.90364 0.90803
0.90331
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -0.68 9.91 37.16 0.37 -0.31 16
2 C -0.14 -0.66 6.05 -26.73 -0.16 -0.83 16
3 C 0.12 0.87 5.67 -4.04 -0.02 0.85 16
4 N -0.74 -5.90 5.56 -60.29 -0.33 -6.24 16
5 C 0.51 5.74 7.83 -10.99 -0.09 5.66 16
6 O -0.54 -8.11 15.98 5.55 0.09 -8.02 16
7 C -0.12 -1.30 4.99 -27.89 -0.14 -1.44 16
8 C -0.12 -1.60 3.33 -27.88 -0.09 -1.70 16
9 C 0.51 8.15 7.70 -10.98 -0.08 8.07 16
10 O -0.56 -10.10 15.39 5.55 0.09 -10.01 16
11 N -0.60 -10.19 2.95 -172.23 -0.51 -10.70 16
12 C 0.10 1.66 6.59 -3.60 -0.02 1.64 16
13 C 0.13 2.59 6.67 -3.60 -0.02 2.57 16
14 N -0.60 -13.85 2.71 -171.78 -0.47 -14.31 16
15 C -0.28 -7.44 9.84 -15.06 -0.15 -7.58 16
16 H 0.08 2.35 8.05 -52.49 -0.42 1.93 16
17 C 0.04 1.10 4.80 -17.43 -0.08 1.02 16
18 N -0.88 -25.90 13.97 55.49 0.78 -25.12 16
19 Si 0.83 20.77 26.46 -169.99 -4.50 16.27 16
20 H -0.29 -7.51 7.11 56.52 0.40 -7.11 16
21 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16
22 H -0.26 -6.11 4.99 56.52 0.28 -5.83 16
23 C 0.13 2.74 4.58 -3.38 -0.02 2.72 16
24 C 0.08 1.42 6.52 -3.38 -0.02 1.40 16
25 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
26 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16
27 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16
28 H 0.07 0.30 8.14 -51.93 -0.42 -0.12 16
29 H 0.07 0.31 8.14 -51.92 -0.42 -0.12 16
30 H 0.07 0.58 8.14 -51.93 -0.42 0.15 16
31 H 0.07 0.57 8.14 -51.93 -0.42 0.14 16
32 H 0.40 2.13 8.47 -40.82 -0.35 1.78 16
33 H 0.10 0.98 8.10 -51.93 -0.42 0.56 16
34 H 0.10 1.02 8.10 -51.93 -0.42 0.60 16
35 H 0.10 1.31 7.68 -51.93 -0.40 0.91 16
36 H 0.10 1.23 7.87 -51.93 -0.41 0.82 16
37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16
38 H 0.08 1.42 7.00 -51.93 -0.36 1.06 16
39 H 0.07 1.41 7.93 -51.93 -0.41 1.00 16
40 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
41 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16
42 H 0.03 0.69 6.78 -51.93 -0.35 0.34 16
43 H 0.08 1.75 5.59 -51.93 -0.29 1.46 16
44 H 0.07 1.28 8.14 -51.93 -0.42 0.86 16
45 H 0.08 1.13 5.91 -51.93 -0.31 0.82 16
LS Contribution 357.92 15.07 5.39 5.39
Total: -1.00 -33.37 357.92 -7.62 -41.00
By element:
Atomic # 1 Polarization: 7.29 SS G_CDS: -7.62 Total: -0.33 kcal
Atomic # 6 Polarization: 12.61 SS G_CDS: -0.54 Total: 12.07 kcal
Atomic # 7 Polarization: -55.84 SS G_CDS: -0.53 Total: -56.37 kcal
Atomic # 8 Polarization: -18.21 SS G_CDS: 0.17 Total: -18.03 kcal
Atomic # 14 Polarization: 20.77 SS G_CDS: -4.50 Total: 16.27 kcal
Total LS contribution 5.39 Total: 5.39 kcal
Total: -33.37 -7.62 -41.00 kcal
The number of atoms in the molecule is 45
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000330836197.mol2 45
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -11.858 kcal
(2) G-P(sol) polarization free energy of solvation -33.375 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.233 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.623 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.998 kcal
(6) G-S(sol) free energy of system = (1) + (5) -52.856 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.65 seconds